IslandPath Analysis: Clostridium beijerinckii NCIMB 8052



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.63   STD DEV: 3.23
Clostridium beijerinckii NCIMB 8052, complete genome - 1..6000632
5020 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
639	 28.45	0	766564..767874	+	436	150015531	-	Cbei_0642	-	XRE family transcriptional regulator
640	 27.33	-1	767892..769157	+	421	150015532	-	Cbei_0643	-	TPR repeat-containing protein
641	 29.46	0	769315..769701	-	128	150015533	-	Cbei_0644	-	CBS domain-containing protein
642	 31.79	0	769968..772559	+	863	150015534	-	Cbei_0645	-	ATPase
643	 32.50	0	772829..773425	-	198	150015535	-	Cbei_0646	-	hypothetical protein
644	 32.46	0	774050..774853	+	267	150015536	-	Cbei_0647	-	thiamine biosynthesis protein ThiF
645	 29.03	0	774861..775511	+	216	150015537	-	Cbei_0648	-	thiamine monophosphate synthase
646	 30.33	0	775695..776561	+	288	150015538	-	Cbei_0649	-	PP-loop domain-containing protein
647	 25.00	-1	776651..776842	+	63	150015539	-	Cbei_0650	-	hypothetical protein
648	 30.13	0	777035..778780	+	581	150015540	-	Cbei_0651	-	diguanylate cyclase/phosphodiesterase
649	 29.67	0	779236..779754	+	172	150015541	-	Cbei_0652	-	putative tryptophan transport protein
650	 29.71	0	779827..780543	-	238	150015542	-	Cbei_0653	-	polysaccharide deacetylase
651	 25.98	-1	780721..786075	+	1784	150015543	-	Cbei_0654	-	diguanylate cyclase
652	 24.65	-1	786173..786679	+	168	150015544	-	Cbei_0655	-	Cna B domain-containing protein
653	 32.20	0	786859..787299	+	146	150015545	-	Cbei_0656	-	deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
654	 31.55	0	787339..787899	-	186	150015546	-	Cbei_0657	-	methyltransferase type 11
655	 27.42	0	788485..789042	+	185	150015547	-	Cbei_0658	-	accessory gene regulator B
656	 26.60	-1	789261..790523	+	420	150015548	-	Cbei_0659	-	signal transduction histidine kinase regulating citrate/malate metabolism
657	 25.09	-1	790809..791366	+	185	150015549	-	Cbei_0660	-	accessory gene regulator B
658	 33.11	0	791870..792760	+	296	150015550	-	Cbei_0661	-	ferredoxin--NADP(+) reductase subunit alpha
659	 36.13	+1	792760..794154	+	464	150015551	-	Cbei_0662	-	putative oxidoreductase
660	 31.39	0	794524..795243	+	239	150015552	-	Cbei_0663	-	hypothetical protein
661	 35.13	+1	795406..797406	-	666	150015553	-	Cbei_0664	-	alpha amylase, catalytic region
662	 30.77	0	798073..799788	+	571	150015554	-	Cbei_0665	-	methyl-accepting chemotaxis sensory transducer
663	 29.04	0	800214..800609	+	131	150015555	-	Cbei_0666	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
664	 31.93	0	800671..802671	+	666	150015556	-	Cbei_0667	-	methyl-accepting chemotaxis sensory transducer
665	 26.74	-1	802683..802955	+	90	150015557	-	Cbei_0668	-	anti-sigma-factor antagonist
666	 27.91	0	803010..804833	+	607	150015558	-	Cbei_0669	-	putative PAS/PAC sensor protein
667	 25.20	-1	805611..806606	+	331	150015559	-	Cbei_0670	-	hypothetical protein
668	 28.32	0	806718..807176	+	152	150015560	-	Cbei_0671	-	hypothetical protein
669	 31.53	0	807402..808622	+	406	150015561	-	Cbei_0672	-	transposase, mutator type
670	 31.36	0	809197..810663	-	488	150015562	-	Cbei_0674	-	NAD-dependent aldehyde dehydrogenase-like protein
671	 34.85	+1	810761..811948	-	395	150015563	-	Cbei_0675	-	coenzyme F390 synthetase-like protein
672	 33.08	0	812698..813087	+	129	150015564	-	Cbei_0676	-	transposase
673	 30.31	0	813953..815407	+	484	150015565	-	Cbei_0677	-	EmrB/QacA family drug resistance transporter
674	 25.06	-1	815877..816734	-	285	150015566	-	Cbei_0678	-	AraC family transcriptional regulator
675	 32.82	0	816988..818544	+	518	150015567	-	Cbei_0679	-	ABC transporter related
676	 28.10	0	819171..819800	+	209	150015568	-	Cbei_0680	-	O-methyltransferase family protein
677	 30.40	0	820473..821222	+	249	150015569	-	Cbei_0681	-	thioesterase
678	 24.42	-1	821573..821830	+	85	150015570	-	Cbei_0682	-	hypothetical protein
679	 28.45	0	821927..823237	+	436	150015571	-	Cbei_0683	-	radical SAM domain-containing protein
680	 28.39	0	823312..824625	+	437	150015572	-	Cbei_0684	-	AMP-dependent synthetase and ligase
681	 31.73	0	824806..825927	+	373	150015573	-	Cbei_0685	-	alcohol dehydrogenase
682	 29.04	0	826026..827726	+	566	150015574	-	Cbei_0686	-	AMP-dependent synthetase and ligase
683	 28.28	0	827757..828488	+	243	150015575	-	Cbei_0687	-	4'-phosphopantetheinyl transferase
684	 27.56	0	828508..829182	+	224	150015576	-	Cbei_0688	-	beta-lactamase domain-containing protein
685	 29.08	0	829295..829600	+	101	150015577	-	Cbei_0689	-	hypothetical protein
686	 30.48	0	829832..830812	+	326	150015578	-	Cbei_0690	-	radical SAM domain-containing protein
687	 24.51	-1	831345..832103	+	252	150015579	-	Cbei_0691	-	acyl-ACP thioesterase
688	 30.90	0	832744..833772	+	342	150015580	-	Cbei_0692	-	phospho-2-dehydro-3-deoxyheptonate aldolase
689	 33.93	+1	834710..835891	-	393	150015581	-	Cbei_0694	-	RNA-directed DNA polymerase
690	 32.38	0	838318..838839	+	173	150015582	-	Cbei_0696	-	guanine-specific ribonuclease N1 and T1
691	 29.82	0	838861..839145	+	94	150015583	-	Cbei_0697	-	barstar (barnase inhibitor)
692	 27.15	-1	839233..839976	+	247	150015584	-	Cbei_0698	-	RpiR family transcriptional regulator
693	 34.24	+1	840290..841717	+	475	150015585	-	Cbei_0699	-	cellobiose/arbutin/salicin-specific PTS system components IIBC
694	 32.00	0	841710..843134	+	474	150015586	-	Cbei_0700	-	cryptic 6-phospho-beta-glucosidase
695	 28.13	0	843360..844262	-	300	150015587	-	Cbei_0701	-	glycyl-radical activating family protein
696	 32.01	0	844586..845338	+	250	150015588	-	Cbei_0702	-	DeoR family transcriptional regulator
697	 30.00	0	845717..846196	-	159	150015589	-	Cbei_0703	-	hypothetical protein
698	 31.43	0	846193..846402	-	69	150015590	-	Cbei_0704	-	XRE family transcriptional regulator
699	 32.54	0	846785..849190	+	801	150015591	-	Cbei_0705	-	pyruvate formate-lyase
700	 25.90	-1	849348..849791	-	147	150015592	-	Cbei_0706	-	MarR family transcriptional regulator
701	 31.55	0	850178..851356	-	392	150015593	-	Cbei_0707	-	major facilitator transporter
702	 35.07	+1	851766..852398	+	210	150015594	-	Cbei_0708	-	cobalamin B12-binding domain-containing protein
703	 35.34	+1	852398..853441	+	347	150015595	-	Cbei_0709	-	uroporphyrinogen decarboxylase
704	 30.05	0	853446..855791	+	781	150015596	-	Cbei_0710	-	histidine kinase
705	 38.24	+2	856709..857686	+	325	150015597	-	Cbei_0711	-	PTS system mannose/fructose/sorbose family IIA subunit
706	 38.41	+2	857722..858528	+	268	150015598	-	Cbei_0712	-	phosphotransferase system PTS, sorbose-specific IIC subunit
707	 35.96	+1	858548..859459	+	303	150015599	-	Cbei_0713	-	PTS system mannose/fructose/sorbose family IID subunit
708	 31.54	0	859544..859990	+	148	150015600	-	Cbei_0714	-	hypothetical protein
709	 34.09	+1	860201..860992	-	263	150015601	-	Cbei_0715	-	nitroreductase
710	 31.00	0	861271..862512	-	413	150015602	-	Cbei_0716	-	major facilitator transporter
711	 29.91	0	862735..863553	+	272	150015603	-	Cbei_0717	-	XRE family transcriptional regulator
712	 29.62	0	863765..864652	+	295	150015604	-	Cbei_0718	-	MarR family transcriptional regulator
713	 31.26	0	864784..865602	-	272	150015605	-	Cbei_0719	-	integrase catalytic subunit
714	 31.28	0	865671..866351	-	226	150015606	-	Cbei_0720	-	hypothetical protein
715	 27.97	0	866577..867359	+	260	150015607	-	Cbei_0721	-	phage replisome organizer, putative
716	 32.42	0	867466..868338	-	290	150015608	-	Cbei_0722	-	LysR family transcriptional regulator
717	 31.40	0	868523..869974	+	483	150015609	-	Cbei_0723	-	EmrB/QacA family drug resistance transporter
718	 30.49	0	870225..871526	-	433	150015610	-	Cbei_0724	-	transposase IS116/IS110/IS902 family protein
719	 29.74	0	871946..872530	+	194	150015611	-	Cbei_0725	-	nitroreductase
720	 28.64	0	872647..873051	-	134	150015612	-	Cbei_0726	-	MerR family transcriptional regulator
721	 35.67	+1	873148..874602	+	484	150015613	-	Cbei_0727	-	aldehyde dehydrogenase
722	 30.37	0	874717..875493	+	258	150015614	-	Cbei_0728	-	methyltransferase type 11
723	 33.67	0	875799..877280	+	493	150015615	-	Cbei_0729	-	aldehyde dehydrogenase
724	 31.05	0	877468..878910	-	480	150015616	-	Cbei_0730	-	hypothetical protein
725	 32.26	0	879364..880389	+	341	150015617	-	Cbei_0731	-	alanine racemase
726	 31.49	0	880767..882017	+	416	150015618	-	Cbei_0732	-	extracellular solute-binding protein
727	 29.40	0	882191..883054	+	287	150015619	-	Cbei_0733	-	binding-protein-dependent transport systems inner membrane component
728	 30.06	0	883051..883875	+	274	150015620	-	Cbei_0734	-	binding-protein-dependent transport systems inner membrane component
729	 30.16	0	883929..885569	+	546	150015621	-	Cbei_0735	-	alpha amylase, catalytic region
730	 27.74	0	886113..887453	+	446	150015622	-	Cbei_0736	-	hypothetical protein
731	 28.12	0	887553..888587	+	344	150015623	-	Cbei_0737	-	peptidase U32
732	 32.51	0	888829..890046	-	405	150015624	-	Cbei_0738	-	major facilitator transporter
733	 35.53	+1	890171..890806	-	211	150015625	-	Cbei_0739	-	NADPH-dependent FMN reductase
734	 34.37	+1	891195..891773	+	192	150015626	-	Cbei_0740	-	TetR family transcriptional regulator
735	 31.57	0	892285..892794	+	169	150015627	-	Cbei_0741	-	hypothetical protein
736	 32.18	0	893159..894373	+	404	150015628	-	Cbei_0742	-	membrane protein
737	 26.10	-1	894664..895797	+	377	150015629	-	Cbei_0743	-	FliB family protein
738	 27.79	0	896133..898568	+	811	150015630	-	Cbei_0744	-	diguanylate cyclase with PAS/PAC sensor
30.63	MEAN

3.23	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.