IslandPath Analysis: Clostridium beijerinckii NCIMB 8052



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.63   STD DEV: 3.23
Clostridium beijerinckii NCIMB 8052, complete genome - 1..6000632
5020 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3537	 26.20	-1	4155432..4156370	-	312	150018429	-	Cbei_3607	-	helix-turn-helix, type 11 domain-containing protein
3538	 29.17	0	4156646..4157773	+	375	150018430	-	Cbei_3608	-	phage integrase family protein
3539	 26.36	-1	4157775..4159739	+	654	150018431	-	Cbei_3609	-	phage integrase family protein
3540	 28.27	0	4159741..4160115	+	124	150018432	-	Cbei_3610	-	Tn554-related, transposase C
3541	 23.46	-2	4160173..4160871	+	232	150018433	-	Cbei_3611	-	hypothetical protein
3542	 29.80	0	4160975..4161427	+	150	150018434	-	Cbei_3612	-	PhnB protein
3543	 36.19	+1	4161618..4161827	-	69	150018435	-	Cbei_3613	-	hypothetical protein
3544	 35.36	+1	4161878..4162765	-	295	150018436	-	Cbei_3614	-	hypothetical protein
3545	 32.99	0	4163300..4164169	-	289	150018437	-	Cbei_3615	-	methionine aminopeptidase, type I
3546	 29.96	0	4164190..4164870	-	226	150018438	-	Cbei_3616	-	XRE family transcriptional regulator
3547	 40.35	+2	4165414..4166439	-	341	150018439	-	Cbei_3617	-	NAD-dependent epimerase/dehydratase
3548	 36.21	+1	4166555..4167076	+	173	150018440	-	Cbei_3618	-	TetR family transcriptional regulator
3549	 34.92	+1	4167175..4167741	-	188	150018441	-	Cbei_3619	-	NAD(P)H dehydrogenase (quinone)
3550	 29.02	0	4167898..4168314	+	138	150018442	-	Cbei_3620	-	HxlR family transcriptional regulator
3551	 28.69	0	4168422..4169240	-	272	150018443	-	Cbei_3621	-	hypothetical protein
3552	 27.49	0	4169233..4169814	-	193	150018444	-	Cbei_3622	-	ECF subfamily RNA polymerase sigma-24 factor
3553	 30.09	0	4170184..4171416	+	410	150018445	-	Cbei_3623	-	hypothetical protein
3554	 29.80	0	4171483..4172727	+	414	150018446	-	Cbei_3624	-	hypothetical protein
3555	 30.93	0	4172987..4174981	-	664	150018447	-	Cbei_3625	-	methyl-accepting chemotaxis sensory transducer
3556	 32.16	0	4175487..4176338	-	283	150018448	-	Cbei_3626	-	hypothetical protein
3557	 27.82	0	4176356..4176718	-	120	150018449	-	Cbei_3627	-	hypothetical protein
3558	 27.40	0	4176734..4177222	-	162	150018450	-	Cbei_3628	-	DNA binding domain-containing protein
3559	 31.69	0	4177709..4178740	-	343	150018451	-	Cbei_3629	-	uncharacterized Fe-S protein
3560	 35.54	+1	4178927..4180105	-	392	150018452	-	Cbei_3630	-	acetyl-CoA acetyltransferase
3561	 31.20	0	4180344..4181234	+	296	150018453	-	Cbei_3631	-	LysR family transcriptional regulator
3562	 26.33	-1	4181745..4182101	-	118	150018454	-	Cbei_3632	-	hypothetical protein
3563	 34.25	+1	4182705..4183469	-	254	150018455	-	Cbei_3633	-	short-chain dehydrogenase/reductase SDR
3564	 27.42	0	4183699..4184121	+	140	150018456	-	Cbei_3634	-	MerR family transcriptional regulator
3565	 30.12	0	4184663..4185844	-	393	150018457	-	Cbei_3635	-	cation diffusion facilitator family transporter
3566	 29.22	0	4186149..4187510	-	453	150018458	-	Cbei_3636	-	MATE efflux family protein
3567	 30.59	0	4187595..4188032	-	145	150018459	-	Cbei_3637	-	MarR family transcriptional regulator
3568	 34.66	+1	4188537..4189139	+	200	150018460	-	Cbei_3638	-	lytic transglycosylase, catalytic
3569	 27.24	-1	4189643..4190167	-	174	150018461	-	Cbei_3639	-	VanZ family protein
3570	 30.49	0	4191337..4192638	-	433	150018462	-	Cbei_3641	-	transposase IS116/IS110/IS902 family protein
3571	 35.10	+1	4193060..4193908	+	282	150018463	-	Cbei_3642	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
3572	 33.71	0	4194069..4194875	-	268	150018464	-	Cbei_3643	-	nitroreductase
3573	 32.30	0	4195274..4195852	-	192	150018465	-	Cbei_3644	-	TetR family transcriptional regulator
3574	 29.51	0	4196193..4196951	-	252	150018466	-	Cbei_3645	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
3575	 30.16	0	4197068..4197634	+	188	150018467	-	Cbei_3646	-	TetR family transcriptional regulator
3576	 28.07	0	4197895..4198350	-	151	150018468	-	Cbei_3647	-	hypothetical protein
3577	 27.95	0	4198598..4199173	-	191	150018469	-	Cbei_3648	-	isoprenylcysteine carboxyl methyltransferase
3578	 25.00	-1	4199200..4199667	-	155	150018470	-	Cbei_3649	-	MarR family transcriptional regulator
3579	 35.83	+1	4199973..4200572	-	199	150018471	-	Cbei_3650	-	TetR family transcriptional regulator
3580	 36.98	+1	4200871..4202103	+	410	150018472	-	Cbei_3651	-	major facilitator transporter
3581	 28.59	0	4202429..4203271	-	280	150018473	-	Cbei_3652	-	extracellular solute-binding protein
3582	 24.60	-1	4203584..4204018	-	144	150018474	-	Cbei_3653	-	hypothetical protein
3583	 28.60	0	4204031..4204579	-	182	150018475	-	Cbei_3654	-	response regulator receiver protein
3584	 26.74	-1	4204854..4205384	-	176	150018476	-	Cbei_3655	-	hypothetical protein
3585	 29.07	0	4205377..4206759	-	460	150018477	-	Cbei_3656	-	iron-sulfur flavoprotein
3586	 30.55	0	4208488..4209312	+	274	150018478	-	Cbei_3658	-	hypothetical protein
3587	 36.62	+1	4209709..4210560	-	283	150018479	-	Cbei_3659	-	NAD-dependent epimerase/dehydratase
3588	 34.53	+1	4210701..4211534	+	277	150018480	-	Cbei_3660	-	helix-turn-helix domain-containing protein
3589	 29.46	0	4211860..4212504	-	214	150018481	-	Cbei_3661	-	60 kDa inner membrane insertion protein
3590	 27.99	0	4213487..4214590	-	367	150018482	-	Cbei_3662	-	integral membrane sensor signal transduction histidine kinase
3591	 30.43	0	4214580..4215269	-	229	150018483	-	Cbei_3663	-	two component transcriptional regulator
3592	 31.16	0	4215290..4215979	-	229	150018484	-	Cbei_3664	-	peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin
3593	 24.94	-1	4216281..4217162	-	293	150018485	-	Cbei_3665	-	histidine kinase
3594	 26.39	-1	4217187..4217921	-	244	150018486	-	Cbei_3666	-	hypothetical protein
3595	 27.82	0	4217937..4218662	-	241	150018487	-	Cbei_3667	-	hypothetical protein
3596	 28.77	0	4218655..4219575	-	306	150018488	-	Cbei_3668	-	ABC transporter related
3597	 28.05	0	4219722..4220402	-	226	150018489	-	Cbei_3669	-	two component transcriptional regulator
3598	 30.71	0	4221632..4222546	-	304	150018490	-	Cbei_3670	-	RNA-directed DNA polymerase (Reverse transcriptase)
3599	 30.83	0	4223140..4225137	-	665	150018491	-	Cbei_3671	-	methyl-accepting chemotaxis sensory transducer
3600	 31.06	0	4225435..4227900	-	821	150018492	-	Cbei_3672	-	dual specificity protein phosphatase
3601	 33.43	0	4228426..4229418	+	330	150018493	-	Cbei_3673	-	penicillin amidase
3602	 28.69	0	4229636..4230754	-	372	150018494	-	Cbei_3674	-	hypothetical protein
3603	 30.40	0	4230756..4231301	-	181	150018495	-	Cbei_3675	-	RNA polymerase factor sigma-70
3604	 32.44	0	4231794..4232018	+	74	150018496	-	Cbei_3676	-	hypothetical protein
3605	 30.14	0	4232146..4232364	+	72	150018497	-	Cbei_3677	-	hypothetical protein
3606	 28.57	0	4232500..4232919	+	139	150018498	-	Cbei_3678	-	transposase-related protein
3607	 28.16	0	4232922..4233830	+	302	150018499	-	Cbei_3679	-	integrase catalytic subunit
3608	 29.21	0	4234185..4234499	+	104	150018500	-	Cbei_3680	-	hypothetical protein
3609	 26.73	-1	4234556..4234873	+	105	150018501	-	Cbei_3681	-	hypothetical protein
3610	 21.96	-2	4235443..4236462	-	339	150018502	-	Cbei_3682	-	hypothetical protein
3611	 32.59	0	4236649..4237323	-	224	150018503	-	Cbei_3683	-	cell wall-associated hydrolase-like protein
3612	 26.61	-1	4237692..4238360	-	222	150018504	-	Cbei_3684	-	AAA ATPase
3613	 22.95	-2	4238363..4239595	-	410	150018505	-	Cbei_3685	-	hypothetical protein
3614	 23.28	-2	4239610..4240713	-	367	150018506	-	Cbei_3686	-	hypothetical protein
3615	 33.85	0	4240939..4241322	-	127	150018507	-	Cbei_3687	-	hypothetical protein
3616	 23.20	-2	4241411..4241992	-	193	150018508	-	Cbei_3688	-	hypothetical protein
3617	 29.96	0	4244005..4244685	-	226	150018509	-	Cbei_3690	-	ABC transporter related
3618	 24.43	-1	4244682..4245905	-	407	150018510	-	Cbei_3691	-	hypothetical protein
3619	 25.70	-1	4245911..4247011	-	366	150018511	-	Cbei_3692	-	hypothetical protein
3620	 29.36	0	4247703..4248431	-	242	150018512	-	Cbei_3693	-	ABC transporter related
3621	 26.04	-1	4248436..4249230	-	264	150018513	-	Cbei_3694	-	cobalt transport protein
3622	 35.76	+1	4249398..4250387	-	329	150018514	-	Cbei_3695	-	cobalt transport protein CbiM
3623	 28.48	0	4250712..4251371	-	219	150018515	-	Cbei_3696	-	hydrogenase accessory protein HypB
3624	 30.97	0	4251715..4252137	+	140	150018516	-	Cbei_3697	-	hypothetical protein
3625	 32.06	0	4252609..4253157	+	182	150018517	-	Cbei_3698	-	MarR family transcriptional regulator
3626	 30.77	0	4253184..4254629	+	481	150018518	-	Cbei_3699	-	beta-lactamase
3627	 26.97	-1	4254824..4256128	-	434	150018519	-	Cbei_3700	-	hypothetical protein
3628	 31.71	0	4256139..4257185	-	348	150018520	-	Cbei_3701	-	ApbE family lipoprotein
3629	 30.93	0	4258477..4259391	+	304	150018521	-	Cbei_3702	-	periplasmic binding protein
3630	 32.55	0	4259384..4260406	+	340	150018522	-	Cbei_3703	-	transport system permease protein
3631	 29.10	0	4260429..4261184	+	251	150018523	-	Cbei_3704	-	ABC transporter related
3632	 27.39	-1	4261502..4261972	-	156	150018524	-	Cbei_3705	-	hypothetical protein
3633	 31.58	0	4262393..4263361	-	322	150018525	-	Cbei_3706	-	LuxR family transcriptional regulator
3634	 28.87	0	4263722..4264819	-	365	150018526	-	Cbei_3707	-	diguanylate cyclase
3635	 24.91	-1	4265302..4266417	-	371	150018527	-	Cbei_3708	-	putative transporter
3636	 38.99	+2	4266909..4267226	-	105	150018528	-	Cbei_3709	-	cobalt/cobalamin transport protein CbiN
30.63	MEAN

3.23	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.