IslandPathversion 1.0

IslandPath Analysis: Clostridium beijerinckii NCIMB 8052



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 30.63 STD DEV: 3.23
Clostridium beijerinckii NCIMB 8052, complete genome - 1..6000632
5020 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2245	 35.11	+1	2634809..2635033	-	74	150017137	-	Cbei_2274	-	hypothetical protein
2246	 28.87	0	2635168..2635884	+	238	150017138	-	Cbei_2275	-	hypothetical protein
2247	 32.34	0	2636931..2638634	+	567	150017139	-	Cbei_2276	-	hydroxylamine reductase
2248	 28.15	0	2638796..2639509	+	237	150017140	-	Cbei_2277	-	CRP/FNR family transcriptional regulator
2249	 34.19	+1	2639635..2639868	+	77	150017141	-	Cbei_2278	-	hypothetical protein
2250	 34.57	+1	2640133..2640294	+	53	150017142	-	Cbei_2279	-	rubredoxin-type Fe(Cys)4 protein
2251	 33.51	0	2640589..2642247	+	552	150017143	-	Cbei_2280	-	hydroxylamine reductase
2252	 28.81	0	2642515..2643288	+	257	150017144	-	Cbei_2281	-	oxidoreductase FAD/NAD(P)-binding subunit
2253	 32.92	0	2643321..2644787	+	488	150017145	-	Cbei_2282	-	aldehyde dehydrogenase
2254	 33.81	0	2644927..2645343	+	138	150017146	-	Cbei_2283	-	flavodoxin
2255	 31.74	0	2645460..2647094	-	544	150017147	-	Cbei_2284	-	hydroxylamine reductase
2256	 29.58	0	2647468..2647680	+	70	150017148	-	Cbei_2285	-	hypothetical protein
2257	 31.17	0	2648508..2649200	+	230	150017149	-	Cbei_2287	-	ErfK/YbiS/YcfS/YnhG family protein
2258	 31.18	0	2649243..2649428	-	61	150017150	-	Cbei_2288	-	hypothetical protein
2259	 28.99	0	2649797..2650141	+	114	150017151	-	Cbei_2289	-	hypothetical protein
2260	 30.00	0	2650670..2650969	+	99	150017152	-	Cbei_2290	-	hypothetical protein
2261	 35.14	+1	2651199..2651474	+	91	150017153	-	Cbei_2291	-	hypothetical protein
2262	 30.15	0	2652733..2654493	+	586	150017154	-	Cbei_2292	-	restriction endonuclease
2263	 29.22	0	2654821..2655063	-	80	150017155	-	Cbei_2293	-	hypothetical protein
2264	 29.82	0	2655668..2656066	+	132	150017156	-	Cbei_2294	-	hypothetical protein
2265	 29.87	0	2657858..2658493	+	211	150017157	-	Cbei_2295	-	chloramphenicol O-acetyltransferase
2266	 29.82	0	2658617..2658901	+	94	150017158	-	Cbei_2296	-	hypothetical protein
2267	 29.29	0	2659072..2659590	+	172	150017159	-	Cbei_2297	-	hypothetical protein
2268	 31.34	0	2659815..2660015	-	66	150017160	-	Cbei_2298	-	hypothetical protein
2269	 30.87	0	2660113..2660640	-	175	150017161	-	Cbei_2299	-	hypothetical protein
2270	 27.16	-1	2660928..2661170	+	80	150017162	-	Cbei_2300	-	hypothetical protein
2271	 24.66	-1	2661325..2663250	+	641	150017163	-	Cbei_2301	-	hypothetical protein
2272	 23.21	-2	2663334..2664410	+	358	150017164	-	Cbei_2302	-	hypothetical protein
2273	 26.28	-1	2664511..2665077	-	188	150017165	-	Cbei_2303	-	ECF subfamily RNA polymerase sigma-24 factor
2274	 33.72	0	2665344..2666129	+	261	150017166	-	Cbei_2304	-	cell wall hydrolase/autolysin
2275	 25.70	-1	2666464..2670039	+	1191	150017167	-	Cbei_2305	-	hypothetical protein
2276	 29.91	0	2671309..2672478	+	389	150017168	-	Cbei_2306	-	phage integrase family protein
2277	 36.59	+1	2673240..2673608	-	122	150017169	-	Cbei_2307	-	hypothetical protein
2278	 31.75	0	2673967..2674218	+	83	150017170	-	Cbei_2308	-	hypothetical protein
2279	 31.76	0	2674829..2675653	+	274	150017171	-	Cbei_2309	-	anaerobic cobalt chelatase
2280	 30.36	0	2675735..2677114	+	459	150017172	-	Cbei_2310	-	cobyrinic acid a,c-diamide synthase
2281	 33.49	0	2677182..2677805	+	207	150017173	cbiC	Cbei_2311	-	precorrin-8X methylmutase
2282	 33.33	0	2677863..2679047	+	394	150017174	cbiD	Cbei_2312	-	cobalt-precorrin-6A synthase
2283	 29.59	0	2679159..2679773	+	204	150017175	-	Cbei_2313	-	precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit
2284	 29.32	0	2679840..2680412	+	190	150017176	-	Cbei_2314	-	precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit
2285	 34.68	+1	2680560..2681225	+	221	150017177	-	Cbei_2315	-	cobalt-precorrin-2 C(20)-methyltransferase
2286	 34.37	+1	2681276..2682046	+	256	150017178	-	Cbei_2316	-	precorrin-4 C11-methyltransferase
2287	 28.75	0	2682033..2683166	+	377	150017179	-	Cbei_2317	-	cobalamin (vitamin B12) biosynthesis CbiG protein
2288	 25.43	-1	2683262..2683894	+	210	150017180	-	Cbei_2318	-	hypothetical protein
2289	 28.06	0	2684080..2684799	-	239	150017181	-	Cbei_2319	-	GntR family transcriptional regulator
2290	 35.10	+1	2685611..2687029	+	472	150017182	-	Cbei_2320	-	PTS system, trehalose-specific IIBC subunit
2291	 29.22	0	2687048..2688700	+	550	150017183	-	Cbei_2321	-	alpha,alpha-phosphotrehalase
2292	 26.02	-1	2689368..2689859	+	163	150017184	-	Cbei_2322	-	metal dependent phosphohydrolase
2293	 31.07	0	2689881..2690321	+	146	150017185	-	Cbei_2323	-	GCN5-related N-acetyltransferase
2294	 32.40	0	2690473..2690793	-	106	150017186	-	Cbei_2324	-	hypothetical protein
2295	 36.26	+1	2690838..2691383	-	181	150017187	-	Cbei_2325	-	rubrerythrin
2296	 29.36	0	2691576..2692229	+	217	150017188	-	Cbei_2326	-	HAD family hydrolase
2297	 30.05	0	2692421..2692603	+	60	150017189	-	Cbei_2327	-	hypothetical protein
2298	 29.34	0	2692741..2693667	+	308	150017190	-	Cbei_2328	-	LysR family transcriptional regulator
2299	 32.71	0	2693688..2694809	+	373	150017191	-	Cbei_2329	-	methionine synthase, vitamin-B12 independent
2300	 33.16	0	2694974..2696110	+	378	150017192	-	Cbei_2330	-	methionine synthase, vitamin-B12 independent
2301	 29.15	0	2696202..2696966	+	254	150017193	-	Cbei_2331	-	endonuclease/exonuclease/phosphatase
2302	 35.82	+1	2697452..2697973	+	173	150017194	-	Cbei_2332	-	3D domain-containing protein
2303	 32.89	0	2698202..2698882	+	226	150017195	-	Cbei_2333	-	RelA/SpoT domain-containing protein
2304	 32.28	0	2698896..2699462	+	188	150017196	-	Cbei_2334	-	nitroreductase
2305	 32.84	0	2699754..2699957	+	67	150017197	-	Cbei_2335	-	heavy metal transport/detoxification protein
2306	 29.17	0	2700056..2700463	-	135	150017198	-	Cbei_2336	-	hypothetical protein
2307	 32.24	0	2700930..2701385	+	151	150017199	-	Cbei_2337	-	cell wall binding repeat-containing protein
2308	 26.67	-1	2701567..2701956	-	129	150017200	-	Cbei_2338	-	hemerythrin-like metal-binding protein
2309	 29.12	0	2702289..2702834	+	181	150017201	-	Cbei_2339	-	phosphoesterase, PA-phosphatase related
2310	 30.83	0	2703011..2703370	+	119	150017202	-	Cbei_2340	-	hypothetical protein
2311	 27.29	-1	2703468..2704145	+	225	150017203	-	Cbei_2341	-	hypothetical protein
2312	 32.22	0	2704292..2705722	-	476	150017204	aspA	Cbei_2342	-	aspartate ammonia-lyase
2313	 34.44	+1	2706424..2706876	+	150	150017205	-	Cbei_2343	-	AsnC family transcriptional regulator
2314	 31.60	0	2707073..2707303	+	76	150017206	-	Cbei_2344	-	hypothetical protein
2315	 34.30	+1	2709196..2709402	+	68	150017207	-	Cbei_2345	-	small acid-soluble spore protein, alpha/beta type
2316	 31.48	0	2709672..2709833	+	53	150017208	-	Cbei_2346	-	hypothetical protein
2317	 27.71	0	2709984..2710214	+	76	150017209	-	Cbei_2347	-	hypothetical protein
2318	 28.99	0	2710802..2711308	+	168	150017210	-	Cbei_2348	-	hypothetical protein
2319	 27.45	0	2711627..2711932	+	101	150017211	-	Cbei_2349	-	hypothetical protein
2320	 28.42	0	2712567..2713481	+	304	150017212	-	Cbei_2350	-	polysaccharide deacetylase
2321	 32.96	0	2713694..2713963	+	89	150017213	-	Cbei_2351	-	hypothetical protein
2322	 36.28	+1	2713976..2715331	+	451	150017214	-	Cbei_2352	-	hypothetical protein
2323	 32.68	0	2715997..2717976	+	659	150017215	-	Cbei_2353	-	hypothetical protein
2324	 32.13	0	2718243..2719154	+	303	150017216	-	Cbei_2354	-	auxin efflux carrier
2325	 30.59	0	2719410..2720174	+	254	150017217	-	Cbei_2355	-	exodeoxyribonuclease III Xth
2326	 28.91	0	2720236..2720913	-	225	150017218	-	Cbei_2356	-	hypothetical protein
2327	 34.37	+1	2721474..2722820	+	448	150017219	-	Cbei_2357	-	extracellular solute-binding protein
2328	 30.19	0	2722917..2723807	+	296	150017220	-	Cbei_2358	-	binding-protein-dependent transport systems inner membrane component
2329	 28.96	0	2723809..2724699	+	296	150017221	-	Cbei_2359	-	monosaccharide-transporting ATPase
2330	 32.94	0	2724763..2726280	+	505	150017222	-	Cbei_2360	-	Alpha-N-arabinofuranosidase
2331	 30.95	0	2726387..2727310	-	307	150017223	-	Cbei_2361	-	regulatory protein, ArsR
2332	 26.09	-1	2727513..2728409	-	298	150017224	-	Cbei_2362	-	helix-turn-helix domain-containing protein
2333	 32.16	0	2728599..2730551	+	650	150017225	-	Cbei_2363	-	hypothetical protein
2334	 31.80	0	2730663..2731835	+	390	150017226	-	Cbei_2364	-	glycerol-1-phosphate dehydrogenase (NAD(P)(+))
2335	 27.78	0	2731840..2732631	+	263	150017227	-	Cbei_2365	-	HAD family hydrolase
2336	 29.02	0	2733071..2733673	+	200	150017228	-	Cbei_2366	-	NUDIX hydrolase
2337	 30.63	0	2734373..2735074	+	233	150017229	-	Cbei_2367	-	ribose 5-phosphate isomerase
2338	 29.66	0	2735116..2735550	+	144	150017230	-	Cbei_2368	-	GCN5-related N-acetyltransferase
2339	 29.49	0	2735586..2736443	+	285	150017231	-	Cbei_2369	-	AAA ATPase
2340	 29.94	0	2736514..2736690	+	58	150017232	-	Cbei_2370	-	acetyltransferase
2341	 27.36	-1	2737005..2737556	+	183	150017233	-	Cbei_2371	-	hypothetical protein
2342	 31.15	0	2737809..2738174	-	121	150017234	-	Cbei_2372	-	carboxymuconolactone decarboxylase
2343	 23.97	-2	2738254..2738616	+	120	150017235	-	Cbei_2373	-	MerR family transcriptional regulator
2344	 22.91	-2	2738669..2739253	+	194	150017236	-	Cbei_2374	-	CF-9 family membrane protein
30.63	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.