IslandPath Analysis: Clostridium beijerinckii NCIMB 8052



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.63   STD DEV: 3.23
Clostridium beijerinckii NCIMB 8052, complete genome - 1..6000632
5020 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1991	 27.65	0	2338415..2339329	+	304	150016883	-	Cbei_2011	-	isopropylmalate/homocitrate/citramalate synthase-like protein
1992	 30.52	0	2339351..2340133	+	260	150016884	-	Cbei_2012	-	homocitrate synthase
1993	 24.76	-1	2340972..2341391	+	139	150016885	-	Cbei_2013	-	DNA polymerase beta subunit
1994	 26.11	-1	2341388..2341816	+	142	150016886	-	Cbei_2014	-	hypothetical protein
1995	 28.18	0	2341829..2344759	+	976	150016887	-	Cbei_2015	-	exonuclease, RNase T and DNA polymerase III
1996	 26.67	-1	2345282..2345446	+	54	150016888	-	Cbei_2016	-	hypothetical protein
1997	 36.50	+1	2345681..2346532	-	283	150016889	-	Cbei_2017	-	patatin
1998	 25.19	-1	2346637..2347029	+	130	150016890	-	Cbei_2018	-	MerR family transcriptional regulator
1999	 30.48	0	2347463..2347813	-	116	150016891	-	Cbei_2019	-	bacterocin transport accessory protein
2000	 27.24	-1	2348326..2348637	+	103	150016892	-	Cbei_2020	-	hypothetical protein
2001	 33.38	0	2348986..2350956	+	656	150016893	-	Cbei_2021	-	hypothetical protein
2002	 28.13	0	2351380..2352090	+	236	150016894	-	Cbei_2022	-	hypothetical protein
2003	 24.91	-1	2352623..2352895	+	90	150016895	-	Cbei_2023	-	hypothetical protein
2004	 30.08	0	2353495..2354292	+	265	150016896	-	Cbei_2024	-	DNA polymerase beta subunit
2005	 22.90	-2	2355110..2355454	+	114	150016897	-	Cbei_2026	-	hypothetical protein
2006	 30.32	0	2355662..2358247	+	861	150016898	-	Cbei_2027	-	osmosensitive K+ channel signal transduction histidine kinase
2007	 34.19	+1	2358237..2358935	+	232	150016899	-	Cbei_2028	-	two component transcriptional regulator
2008	 31.14	0	2359063..2361066	+	667	150016900	-	Cbei_2029	-	K+ potassium transporter
2009	 32.12	0	2361344..2361838	+	164	150016901	-	Cbei_2030	-	transposase IS3/IS911 family protein
2010	 31.51	0	2362099..2362701	+	200	150016902	-	Cbei_2031	-	integrase catalytic subunit
2011	 24.17	-2	2363214..2363573	+	119	150016903	-	Cbei_2033	-	hypothetical protein
2012	 33.97	+1	2363994..2364779	+	261	150016904	-	Cbei_2034	-	3-hydroxybutyryl-CoA dehydratase
2013	 35.96	+1	2364854..2365993	+	379	150016905	-	Cbei_2035	-	acyl-CoA dehydrogenase domain-containing protein
2014	 34.62	+1	2366007..2366786	+	259	150016906	-	Cbei_2036	-	electron transfer flavoprotein, alpha/beta-subunit-like protein
2015	 35.42	+1	2366809..2367816	+	335	150016907	-	Cbei_2037	-	electron transfer flavoprotein, alpha/beta-subunit-like protein
2016	 33.57	0	2367889..2368314	+	141	150016908	-	Cbei_2038	-	dehydratase
2017	 29.76	0	2368633..2370339	+	568	150016909	-	Cbei_2039	-	sigma-54 dependent trancsriptional regulator
2018	 35.39	+1	2370773..2372329	+	518	150016910	-	Cbei_2040	-	coenzyme A transferase
2019	 36.77	+1	2372518..2373912	+	464	150016911	-	Cbei_2041	-	citrate transporter
2020	 32.65	0	2374977..2375852	+	291	150016912	-	Cbei_2042	-	transcription activator, effector binding
2021	 28.33	0	2376998..2377777	+	259	150016913	-	Cbei_2043	-	hypothetical protein
2022	 38.54	+2	2377887..2378078	+	63	150016914	-	Cbei_2044	-	hypothetical protein
2023	 22.58	-2	2378460..2380886	+	808	150016915	-	Cbei_2045	-	AAA ATPase
2024	 33.74	0	2381227..2382684	-	485	150016916	-	Cbei_2046	-	transposase
2025	 34.07	+1	2382993..2383670	+	225	150016917	-	Cbei_2047	-	two component transcriptional regulator
2026	 32.73	0	2383672..2384673	+	333	150016918	-	Cbei_2048	-	integral membrane sensor signal transduction histidine kinase
2027	 33.76	0	2384782..2385492	+	236	150016919	-	Cbei_2049	-	ABC transporter related
2028	 30.54	0	2385489..2388098	+	869	150016920	-	Cbei_2050	-	hypothetical protein
2029	 26.83	-1	2388709..2388954	+	81	150016921	-	Cbei_2051	-	hypothetical protein
2030	 27.21	-1	2388954..2389361	+	135	150016922	-	Cbei_2052	-	hypothetical protein
2031	 33.55	0	2389530..2390468	-	312	150016923	-	Cbei_2053	-	ApbE family lipoprotein
2032	 34.60	+1	2390461..2391408	-	315	150016924	-	Cbei_2054	-	LysR family transcriptional regulator
2033	 35.67	+1	2391661..2392260	+	199	150016925	-	Cbei_2055	-	NADPH-dependent FMN reductase
2034	 36.47	+1	2392275..2394698	+	807	150016926	-	Cbei_2056	-	flavocytochrome c
2035	 26.56	-1	2395103..2395471	+	122	150016927	-	Cbei_2057	-	hypothetical protein
2036	 31.06	0	2395545..2396204	+	219	150016928	-	Cbei_2058	-	DSBA oxidoreductase
2037	 25.53	-1	2396471..2397790	+	439	150016929	-	Cbei_2059	-	SecC motif-containing protein
2038	 22.99	-2	2397962..2398570	+	202	150016930	-	Cbei_2060	-	hypothetical protein
2039	 36.47	+1	2399301..2400545	+	414	150016931	-	Cbei_2061	-	ammonium transporter
2040	 25.51	-1	2401047..2401442	+	131	150016932	-	Cbei_2062	-	hypothetical protein
2041	 33.49	0	2401624..2404248	-	874	150016933	-	Cbei_2063	-	phosphoenolpyruvate synthase
2042	 28.70	0	2404307..2404954	-	215	150016934	-	Cbei_2064	-	TetR family transcriptional regulator
2043	 25.20	-1	2405203..2405817	+	204	150016935	-	Cbei_2065	-	TetR family transcriptional regulator
2044	 32.35	0	2405840..2408494	+	884	150016936	-	Cbei_2066	-	phosphoenolpyruvate synthase
2045	 35.95	+1	2408734..2410107	-	457	150016937	-	Cbei_2067	-	amidohydrolase
2046	 26.92	-1	2410725..2411114	+	129	150016938	-	Cbei_2068	-	glutaredoxin-like protein
2047	 32.45	0	2411617..2412183	-	188	150016939	-	Cbei_2069	-	manganese containing catalase
2048	 34.85	+1	2412190..2412453	-	87	150016940	-	Cbei_2070	-	spore coat peptide assembly protein CotJB
2049	 31.43	0	2412463..2412777	-	104	150016941	-	Cbei_2071	-	hypothetical protein
2050	 28.94	0	2412959..2413822	-	287	150016942	-	Cbei_2072	-	extracellular solute-binding protein
2051	 32.66	0	2414204..2415538	+	444	150016943	-	Cbei_2073	-	histidine kinase
2052	 29.98	0	2416228..2416764	-	178	150016944	-	Cbei_2074	-	GCN5-related N-acetyltransferase
2053	 26.96	-1	2417507..2418400	+	297	150016945	-	Cbei_2075	-	NUDIX hydrolase
2054	 27.22	-1	2418470..2419270	+	266	150016946	-	Cbei_2076	-	ribose-phosphate pyrophosphokinase
2055	 30.19	0	2419768..2420307	+	179	150016947	-	Cbei_2077	-	amidase
2056	 31.63	0	2420319..2421788	+	489	150016948	-	Cbei_2078	-	putative nicotinate phosphoribosyltransferase
2057	 29.39	0	2422056..2423096	+	346	150016949	-	Cbei_2080	-	hypothetical protein
2058	 33.44	0	2423239..2424162	+	307	150016950	-	Cbei_2081	-	hypothetical protein
2059	 28.74	0	2424269..2425531	+	420	150016951	-	Cbei_2082	-	adenylosuccinate synthase
2060	 30.08	0	2426183..2427658	+	491	150016952	-	Cbei_2083	-	GntR family transcriptional regulator
2061	 29.77	0	2427766..2428383	+	205	150016953	-	Cbei_2084	-	lysine exporter protein LysE/YggA
2062	 30.83	0	2429141..2430097	+	318	150016954	-	Cbei_2085	-	dihydrouridine synthase, DuS
2063	 32.08	0	2430700..2431896	+	398	150016955	-	Cbei_2086	-	trans-2-enoyl-CoA reductase
2064	 28.73	0	2432104..2434038	+	644	150016956	-	Cbei_2087	-	integral membrane sensor signal transduction histidine kinase
2065	 33.33	0	2434280..2434948	+	222	150016957	-	Cbei_2088	-	TenA family transcription regulator
2066	 30.60	0	2434949..2435716	+	255	150016958	-	Cbei_2089	-	ABC transporter related
2067	 30.01	0	2435713..2436495	+	260	150016959	-	Cbei_2090	-	binding-protein-dependent transport systems inner membrane component
2068	 31.64	0	2436476..2437480	+	334	150016960	-	Cbei_2091	-	NMT1/THI5-like protein
2069	 28.38	0	2438193..2438636	+	147	150016961	-	Cbei_2092	-	transcriptional regulator, TrmB
2070	 31.64	0	2438650..2440425	+	591	150016962	-	Cbei_2093	-	ABC transporter related
2071	 31.78	0	2440422..2442350	+	642	150016963	-	Cbei_2094	-	ABC transporter, transmembrane region
2072	 31.28	0	2442825..2443067	+	80	150016964	-	Cbei_2095	-	putative acyl carrier protein
2073	 30.22	0	2443064..2444542	+	492	150016965	-	Cbei_2096	-	AMP-dependent synthetase and ligase
2074	 29.42	0	2444539..2445636	+	365	150016966	-	Cbei_2097	-	acyl-protein synthetase, LuxE
2075	 29.40	0	2445633..2446928	+	431	150016967	-	Cbei_2098	-	acyl-CoA reductase
2076	 31.19	0	2447041..2448813	+	590	150016968	-	Cbei_2099	-	sigma-54 dependent trancsriptional regulator
2077	 33.33	0	2449273..2450727	+	484	150016969	-	Cbei_2100	-	vinylacetyl-CoA Delta-isomerase
2078	 32.98	0	2450729..2451010	+	93	150016970	-	Cbei_2101	-	NifU domain-containing protein
2079	 26.52	-1	2451026..2451289	+	87	150016971	-	Cbei_2102	-	hypothetical protein
2080	 35.01	+1	2451308..2452618	+	436	150016972	-	Cbei_2103	-	acetyl-CoA hydrolase/transferase
2081	 31.72	0	2452654..2453457	+	267	150016973	-	Cbei_2104	-	beta-lactamase domain-containing protein
2082	 27.67	0	2453926..2454402	+	158	150016974	-	Cbei_2105	-	GCN5-related N-acetyltransferase
2083	 30.09	0	2454840..2455640	+	266	150016975	-	Cbei_2106	-	histidinol-phosphatase
2084	 32.51	0	2455683..2456288	+	201	150016976	-	Cbei_2107	-	hypothetical protein
2085	 29.32	0	2456705..2457028	+	107	150016977	-	Cbei_2108	-	regulatory protein, ArsR
2086	 31.78	0	2457103..2457489	+	128	150016978	-	Cbei_2109	-	arsenical resistance operon trans-acting repressor ArsD
2087	 32.93	0	2457545..2459293	+	582	150016979	-	Cbei_2110	-	arsenite-activated ATPase ArsA
2088	 30.43	0	2459319..2459732	+	137	150016980	-	Cbei_2111	-	protein tyrosine phosphatase
2089	 32.29	0	2459761..2460810	+	349	150016981	-	Cbei_2112	-	arsenical-resistance protein
2090	 27.97	0	2461021..2461281	+	86	150016982	-	Cbei_2113	-	hypothetical protein
30.63	MEAN

3.23	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.