IslandPathversion 1.0

IslandPath Analysis: Clostridium beijerinckii NCIMB 8052



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 30.63 STD DEV: 3.23
Clostridium beijerinckii NCIMB 8052, complete genome - 1..6000632
5020 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1892	 28.16	0	2207669..2207842	+	57	150016784	-	Cbei_1912	-	hypothetical protein
1893	 34.24	+1	2207933..2208481	-	182	150016785	-	Cbei_1913	-	BioY protein
1894	 31.76	0	2208529..2209479	-	316	150016786	-	Cbei_1914	-	biotin synthase
1895	 29.03	0	2209859..2210323	+	154	150016787	-	Cbei_1915	-	hypothetical protein
1896	 31.42	0	2210489..2211166	+	225	150016788	-	Cbei_1916	-	hypothetical protein
1897	 34.64	+1	2211859..2212773	+	304	150016789	-	Cbei_1917	-	glucokinase regulatory-like protein
1898	 33.70	0	2212788..2214149	+	453	150016790	-	Cbei_1918	-	phosphotransferase system, EIIC
1899	 28.77	0	2214292..2215365	+	357	150016791	-	Cbei_1919	-	hypothetical protein
1900	 30.14	0	2215404..2216249	+	281	150016792	-	Cbei_1920	-	RpiR family transcriptional regulator
1901	 34.02	+1	2216753..2217631	-	292	150016793	-	Cbei_1921	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
1902	 32.76	0	2217654..2218697	-	347	150016794	-	Cbei_1922	-	agmatine deiminase
1903	 31.84	0	2219030..2220235	+	401	150016795	-	Cbei_1923	-	major facilitator transporter
1904	 33.76	0	2221007..2222644	+	545	150016796	-	Cbei_1924	-	aspartate aminotransferase
1905	 27.94	0	2222695..2223213	-	172	150016797	-	Cbei_1925	-	hypothetical protein
1906	 30.95	0	2223480..2224025	-	181	150016798	-	Cbei_1926	-	PadR-like family transcriptional regulator
1907	 33.88	+1	2224235..2226229	+	664	150016799	-	Cbei_1927	-	NADH:flavin oxidoreductase/NADH oxidase
1908	 28.88	0	2226825..2227610	+	261	150016800	-	Cbei_1928	-	hypothetical protein
1909	 29.50	0	2227645..2229132	-	495	150016801	-	Cbei_1929	-	protein kinase
1910	 32.25	0	2229556..2229924	+	122	150016802	-	Cbei_1930	-	hypothetical protein
1911	 35.73	+1	2230091..2230549	+	152	150016803	-	Cbei_1931	-	hypothetical protein
1912	 34.35	+1	2230915..2232093	+	392	150016804	-	Cbei_1932	-	iron-containing alcohol dehydrogenase
1913	 32.71	0	2232294..2233571	+	425	150016805	-	Cbei_1933	-	glucose-inhibited division protein A
1914	 28.06	0	2233848..2234207	+	119	150016806	-	Cbei_1934	-	hypothetical protein
1915	 30.30	0	2234469..2235623	+	384	150016807	-	Cbei_1935	-	PucR family transcriptional regulator
1916	 34.39	+1	2235811..2237136	+	441	150016808	-	Cbei_1936	-	aminotransferase class-III
1917	 33.68	0	2237150..2238301	+	383	150016809	-	Cbei_1937	-	iron-containing alcohol dehydrogenase
1918	 34.17	+1	2238374..2239207	+	277	150016810	-	Cbei_1938	-	ABC transporter related
1919	 32.95	0	2239210..2239986	+	258	150016811	-	Cbei_1939	-	binding-protein-dependent transport systems inner membrane component
1920	 33.98	+1	2239999..2240766	+	255	150016812	-	Cbei_1940	-	binding-protein-dependent transport systems inner membrane component
1921	 33.43	0	2240922..2241983	+	353	150016813	-	Cbei_1941	-	NMT1/THI5-like protein
1922	 36.26	+1	2242224..2243591	+	455	150016814	-	Cbei_1942	-	dihydropyrimidinase
1923	 36.04	+1	2243681..2245234	+	517	150016815	-	Cbei_1943	-	dihydropyrimidine dehydrogenase
1924	 33.50	0	2245267..2246487	+	406	150016816	-	Cbei_1944	-	allantoate amidohydrolase
1925	 33.79	0	2246597..2247031	-	144	150016817	-	Cbei_1945	-	signal-transduction protein
1926	 30.30	0	2247312..2248268	+	318	150016818	-	Cbei_1946	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
1927	 33.33	0	2248425..2249249	-	274	150016819	-	Cbei_1947	-	Zn-dependent hydrolase of the beta-lactamase fold-like protein
1928	 26.06	-1	2249404..2249967	+	187	150016820	-	Cbei_1948	-	hypothetical protein
1929	 27.78	0	2250460..2251107	+	215	150016821	-	Cbei_1949	-	hypothetical protein
1930	 24.97	-1	2251153..2252718	+	521	150016822	-	Cbei_1950	-	hypothetical protein
1931	 30.53	0	2252940..2254043	+	367	150016823	-	Cbei_1951	-	hypothetical protein
1932	 28.81	0	2260171..2261739	+	522	150016824	-	Cbei_1952	-	hypothetical protein
1933	 28.84	0	2261830..2263230	+	466	150016825	-	Cbei_1953	-	aldehyde dehydrogenase
1934	 32.39	0	2263415..2264584	-	389	150016826	-	Cbei_1954	-	major facilitator transporter
1935	 28.38	0	2264666..2265109	-	147	150016827	-	Cbei_1955	-	MarR family transcriptional regulator
1936	 23.90	-2	2265316..2265792	+	158	150016828	-	Cbei_1956	-	hypothetical protein
1937	 26.33	-1	2271363..2271776	+	137	150016829	-	Cbei_1957	-	thioesterase superfamily protein
1938	 29.78	0	2271851..2272357	-	168	150016830	-	Cbei_1958	-	hypothetical protein
1939	 29.82	0	2272464..2273345	-	293	150016831	-	Cbei_1959	-	LysR family transcriptional regulator
1940	 29.87	0	2273478..2274401	+	307	150016832	-	Cbei_1960	-	2-dehydropantoate 2-reductase
1941	 29.89	0	2274613..2275395	+	260	150016833	-	Cbei_1961	-	short-chain dehydrogenase/reductase SDR
1942	 24.80	-1	2275561..2276193	+	210	150016834	-	Cbei_1962	-	sporulation stage II, protein M
1943	 27.76	0	2276276..2277154	+	292	150016835	-	Cbei_1963	-	phage integrase family protein
1944	 31.11	0	2279037..2279981	+	314	150016836	-	Cbei_1964	-	polysaccharide deacetylase
1945	 28.19	0	2280188..2281237	-	349	150016837	-	Cbei_1965	-	ABC transporter related
1946	 32.89	0	2281237..2281914	-	225	150016838	-	Cbei_1966	-	molybdate ABC transporter, inner membrane subunit
1947	 36.61	+1	2282473..2283783	+	436	150016839	-	Cbei_1967	-	peptidase
1948	 33.50	0	2283820..2285013	+	397	150016840	-	Cbei_1968	-	hypothetical protein
1949	 35.18	+1	2285184..2286104	+	306	150016841	-	Cbei_1969	-	carbamate kinase
1950	 33.19	0	2286761..2288137	+	458	150016842	-	Cbei_1970	-	dihydropyrimidinase
1951	 31.78	0	2288264..2288905	+	213	150016843	-	Cbei_1971	-	YheO domain-containing protein
1952	 31.85	0	2289310..2290593	+	427	150016844	-	Cbei_1972	-	guanine deaminase
1953	 30.82	0	2290750..2293767	+	1005	150016845	-	Cbei_1973	-	putative selenate reductase subunit YgfK
1954	 34.60	+1	2293929..2295353	+	474	150016846	-	Cbei_1974	-	xanthine/uracil/vitamin C permease
1955	 31.17	0	2295746..2297452	+	568	150016847	-	Cbei_1975	-	adenine deaminase
1956	 27.78	0	2297480..2298091	+	203	150016848	-	Cbei_1976	-	TetR family transcriptional regulator
1957	 34.08	+1	2298138..2299340	+	400	150016849	-	Cbei_1977	-	diaminopropionate ammonia-lyase
1958	 30.93	0	2299624..2300952	+	442	150016850	-	Cbei_1978	-	putative chlorohydrolase/aminohydrolase
1959	 31.75	0	2301037..2301414	+	125	150016851	-	Cbei_1979	-	putative endoribonuclease L-PSP
1960	 33.90	+1	2301495..2302562	+	355	150016852	-	Cbei_1980	-	hypothetical protein
1961	 33.93	+1	2302618..2303964	+	448	150016853	-	Cbei_1981	-	uracil-xanthine permease
1962	 36.25	+1	2304390..2306957	+	855	150016854	-	Cbei_1982	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
1963	 33.99	+1	2307010..2307621	+	203	150016855	-	Cbei_1983	-	hypothetical protein
1964	 37.35	+2	2307752..2309866	+	704	150016856	-	Cbei_1984	-	xanthine dehydrogenase
1965	 37.82	+2	2309866..2310333	+	155	150016857	-	Cbei_1985	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
1966	 34.43	+1	2310327..2311145	+	272	150016858	-	Cbei_1986	-	molybdopterin dehydrogenase, FAD-binding
1967	 31.72	0	2311566..2312495	+	309	150016859	-	Cbei_1987	-	regulatory protein, LysR
1968	 34.61	+1	2312703..2313722	+	339	150016860	-	Cbei_1988	-	molybdopterin binding domain-containing protein
1969	 31.38	0	2313892..2314866	+	324	150016861	-	Cbei_1989	-	molybdenum cofactor biosynthesis protein A
1970	 33.33	0	2314946..2315425	+	159	150016862	moaC	Cbei_1990	-	molybdenum cofactor biosynthesis protein C
1971	 35.65	+1	2315425..2315856	+	143	150016863	-	Cbei_1991	-	MOSC domain-containing protein
1972	 33.71	0	2315913..2316716	-	267	150016864	-	Cbei_1992	-	molybdenum ABC transporter, periplasmic molybdate-binding protein
1973	 34.30	+1	2317350..2317556	+	68	150016865	-	Cbei_1993	-	TOBE domain-containing protein
1974	 32.94	0	2317881..2319398	+	505	150016866	-	Cbei_1994	-	ABC transporter related
1975	 29.39	0	2319609..2320571	+	320	150016867	-	Cbei_1995	-	hypothetical protein
1976	 29.09	0	2320633..2321598	+	321	150016868	-	Cbei_1996	-	DNA binding domain-containing protein
1977	 28.74	0	2321755..2322363	+	202	150016869	-	Cbei_1997	-	hypothetical protein
1978	 28.92	0	2322356..2323330	+	324	150016870	-	Cbei_1998	-	hypothetical protein
1979	 33.58	0	2323975..2324796	+	273	150016871	-	Cbei_1999	-	nitrogenase iron protein
1980	 35.47	+1	2325086..2325412	+	108	150016872	-	Cbei_2000	-	nitrogen regulatory protein P-II
1981	 34.38	+1	2325437..2325820	+	127	150016873	-	Cbei_2001	-	nitrogen regulatory protein P-II
1982	 32.45	0	2325839..2327425	+	528	150016874	-	Cbei_2002	-	nitrogenase molybdenum-iron protein alpha chain
1983	 33.11	0	2327425..2328789	+	454	150016875	-	Cbei_2003	-	nitrogenase molybdenum-iron protein beta chain
1984	 33.04	0	2329971..2331335	+	454	150016876	-	Cbei_2004	-	nitrogenase MoFe cofactor biosynthesis protein NifE
1985	 32.22	0	2331322..2334012	+	896	150016877	-	Cbei_2005	-	nitrogenase cofactor biosynthesis protein NifB
1986	 31.07	0	2334338..2334646	+	102	150016878	-	Cbei_2006	-	ferredoxin, 2Fe-2S
1987	 30.51	0	2335016..2336185	+	389	150016879	-	Cbei_2007	-	radical SAM domain-containing protein
1988	 30.71	0	2336229..2337218	+	329	150016880	-	Cbei_2008	-	radical SAM domain-containing protein
1989	 25.85	-1	2337270..2337737	+	155	150016881	-	Cbei_2009	-	AsnC family transcriptional regulator
1990	 28.85	0	2337730..2338197	+	155	150016882	-	Cbei_2010	-	AsnC family transcriptional regulator
1991	 27.65	0	2338415..2339329	+	304	150016883	-	Cbei_2011	-	isopropylmalate/homocitrate/citramalate synthase-like protein
30.63	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.