IslandPathversion 1.0

IslandPath Analysis: Clostridium beijerinckii NCIMB 8052



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 30.63 STD DEV: 3.23
Clostridium beijerinckii NCIMB 8052, complete genome - 1..6000632
5020 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1589	 31.88	0	1881634..1883355	-	573	150016481	-	Cbei_1605	-	resolvase domain-containing protein
1590	 33.05	0	1883821..1888413	+	1530	150016482	-	Cbei_1606	-	fibronectin, type III domain-containing protein
1591	 24.79	-1	1888646..1888879	+	77	150016483	-	Cbei_1607	-	hypothetical protein
1592	 28.87	0	1890001..1891098	+	365	150016484	-	Cbei_1608	-	hypothetical protein
1593	 25.42	-1	1891159..1891815	+	218	150016485	-	Cbei_1609	-	hypothetical protein
1594	 28.26	0	1891860..1892312	+	150	150016486	-	Cbei_1610	-	hypothetical protein
1595	 26.87	-1	1892424..1893707	+	427	150016487	-	Cbei_1611	-	Ion transport 2 domain-containing protein
1596	 23.83	-2	1893890..1896151	+	753	150016488	-	Cbei_1612	-	SecC motif-containing protein
1597	 26.29	-1	1896306..1897697	+	463	150016489	-	Cbei_1613	-	hypothetical protein
1598	 26.30	-1	1897887..1901114	+	1075	150016490	-	Cbei_1614	-	hypothetical protein
1599	 32.26	0	1901502..1901873	-	123	150016491	-	Cbei_1615	-	helix-turn-helix domain-containing protein
1600	 25.00	-1	1902010..1902237	+	75	150016492	-	Cbei_1616	-	XRE family transcriptional regulator
1601	 31.37	0	1902390..1902899	+	169	150016493	-	Cbei_1617	-	hypothetical protein
1602	 27.19	-1	1903072..1903413	+	113	150016494	-	Cbei_1618	-	hypothetical protein
1603	 29.57	0	1903394..1905385	+	663	150016495	-	Cbei_1619	-	hypothetical protein
1604	 29.26	0	1905439..1905855	+	138	150016496	-	Cbei_1620	-	hypothetical protein
1605	 29.86	0	1905855..1906775	+	306	150016497	-	Cbei_1621	-	RecT protein
1606	 30.37	0	1906775..1907482	+	235	150016498	-	Cbei_1622	-	beta-lactamase domain-containing protein
1607	 30.43	0	1907510..1908370	+	286	150016499	-	Cbei_1623	-	primosome, DnaD subunit
1608	 31.77	0	1908363..1909130	+	255	150016500	-	Cbei_1624	-	hypothetical protein
1609	 29.11	0	1909288..1909500	+	70	150016501	-	Cbei_1625	-	hypothetical protein
1610	 30.54	0	1909516..1909944	+	142	150016502	-	Cbei_1626	-	hypothetical protein
1611	 31.16	0	1909948..1910592	+	214	150016503	-	Cbei_1627	-	hypothetical protein
1612	 32.74	0	1910669..1910836	+	55	150016504	-	Cbei_1628	-	hypothetical protein
1613	 26.82	-1	1910951..1911472	+	173	150016505	-	Cbei_1629	-	hypothetical protein
1614	 28.19	0	1911552..1912736	+	394	150016506	-	Cbei_1630	-	hypothetical protein
1615	 24.96	-1	1912911..1913603	+	230	150016507	-	Cbei_1631	-	hypothetical protein
1616	 31.22	0	1913872..1915104	+	410	150016508	-	Cbei_1632	-	DNA methylase N-4/N-6 domain-containing protein
1617	 24.68	-1	1915185..1915496	+	103	150016509	-	Cbei_1633	-	hypothetical protein
1618	 32.03	0	1915557..1915940	+	127	150016510	-	Cbei_1634	-	hypothetical protein
1619	 34.10	+1	1915963..1916745	+	260	150016511	-	Cbei_1635	-	phage-related terminase small subunit-like protein
1620	 34.82	+1	1916738..1918150	+	470	150016512	-	Cbei_1636	-	hypothetical protein
1621	 33.60	0	1918141..1919640	+	499	150016513	-	Cbei_1637	-	hypothetical protein
1622	 32.25	0	1919633..1920643	+	336	150016514	-	Cbei_1638	-	hypothetical protein
1623	 34.12	+1	1920769..1922163	+	464	150016515	-	Cbei_1639	-	hypothetical protein
1624	 34.92	+1	1922182..1922559	+	125	150016516	-	Cbei_1640	-	hypothetical protein
1625	 32.37	0	1922585..1923622	+	345	150016517	-	Cbei_1641	-	hypothetical protein
1626	 30.03	0	1923650..1923982	+	110	150016518	-	Cbei_1642	-	hypothetical protein
1627	 31.41	0	1924201..1924356	+	51	150016519	-	Cbei_1643	-	hypothetical protein
1628	 34.32	+1	1924370..1924774	+	134	150016520	-	Cbei_1644	-	hypothetical protein
1629	 29.00	0	1924782..1925612	+	276	150016521	-	Cbei_1645	-	hypothetical protein
1630	 32.41	0	1925618..1925941	+	107	150016522	-	Cbei_1646	-	hypothetical protein
1631	 33.61	0	1925941..1927383	+	480	150016523	-	Cbei_1647	-	hypothetical protein
1632	 33.33	0	1927403..1927819	+	138	150016524	-	Cbei_1648	-	hypothetical protein
1633	 31.25	0	1927891..1928322	+	143	150016525	-	Cbei_1649	-	Phage XkdN-like protein
1634	 34.92	+1	1928495..1932220	+	1241	150016526	-	Cbei_1650	-	TP901 family phage tail tape measure protein
1635	 27.35	-1	1932641..1933459	+	272	150016527	-	Cbei_1651	-	hypothetical protein
1636	 31.30	0	1933556..1934242	+	228	150016528	-	Cbei_1652	-	SH3 type 3 domain-containing protein
1637	 29.99	0	1934247..1935263	+	338	150016529	-	Cbei_1653	-	hypothetical protein
1638	 33.33	0	1935256..1935603	+	115	150016530	-	Cbei_1654	-	hypothetical protein
1639	 33.11	0	1935596..1936036	+	146	150016531	-	Cbei_1655	-	hypothetical protein
1640	 32.52	0	1936041..1937144	+	367	150016532	-	Cbei_1656	-	baseplate J family protein
1641	 32.20	0	1937145..1939004	+	619	150016533	-	Cbei_1657	-	hypothetical protein
1642	 33.66	0	1939006..1939620	+	204	150016534	-	Cbei_1658	-	phage-like element pbsx protein XkdT
1643	 33.77	0	1939634..1940779	+	381	150016535	-	Cbei_1659	-	hypothetical protein
1644	 26.74	-1	1940807..1941079	+	90	150016536	-	Cbei_1660	-	hypothetical protein
1645	 28.70	0	1941072..1941287	+	71	150016537	-	Cbei_1661	-	hypothetical protein
1646	 32.99	0	1941547..1942719	+	390	150016538	-	Cbei_1662	-	hypothetical protein
1647	 30.35	0	1942761..1943831	+	356	150016539	-	Cbei_1663	-	Ig domain-containing protein
1648	 30.80	0	1943912..1944148	+	78	150016540	-	Cbei_1664	-	hypothetical protein
1649	 28.34	0	1944164..1944604	+	146	150016541	-	Cbei_1665	-	hypothetical protein
1650	 30.28	0	1944668..1945453	+	261	150016542	-	Cbei_1666	-	glycoside hydrolase family protein
1651	 29.52	0	1945571..1946410	+	279	150016543	-	Cbei_1667	-	extracellular solute-binding protein
1652	 27.39	-1	1946658..1947701	-	347	150016544	-	Cbei_1668	-	D-galactose-binding periplasmic protein precursor
1653	 27.37	-1	1947754..1948122	-	122	150016545	-	Cbei_1669	-	hypothetical protein
1654	 29.60	0	1948640..1949524	+	294	150016546	-	Cbei_1670	-	hypothetical protein
1655	 20.59	-2	1950460..1950663	+	67	150016547	-	Cbei_1672	-	hypothetical protein
1656	 25.33	-1	1950885..1951034	+	49	150016548	-	Cbei_1673	-	hypothetical protein
1657	 29.23	0	1951993..1952406	+	137	150016549	-	Cbei_1674	-	hypothetical protein
1658	 34.67	+1	1953040..1953489	+	149	150016550	-	Cbei_1675	-	cell wall binding repeat-containing protein
1659	 30.06	0	1953652..1954599	+	315	150016551	-	Cbei_1676	-	beta-lactamase domain-containing protein
1660	 20.83	-2	1954992..1955183	+	63	150016552	-	Cbei_1677	-	hypothetical protein
1661	 27.63	0	1955372..1955599	+	75	150016553	-	Cbei_1678	-	XRE family transcriptional regulator
1662	 31.42	0	1955849..1956526	+	225	150016554	-	Cbei_1679	-	MgtC/SapB transporter
1663	 25.62	-1	1956874..1957275	+	133	150016555	-	Cbei_1680	-	hypothetical protein
1664	 27.33	-1	1958399..1959514	+	371	150016556	-	Cbei_1682	-	type II secretion system protein
1665	 30.20	0	1959511..1959957	+	148	150016557	-	Cbei_1683	-	hypothetical protein
1666	 27.46	0	1959954..1960379	+	141	150016558	-	Cbei_1684	-	hypothetical protein
1667	 23.66	-2	1960369..1960833	+	154	150016559	-	Cbei_1685	-	hypothetical protein
1668	 23.70	-2	1960863..1961246	+	127	150016560	-	Cbei_1686	-	hypothetical protein
1669	 24.47	-1	1961311..1961976	+	221	150016561	-	Cbei_1687	-	hypothetical protein
1670	 23.65	-2	1961987..1962337	+	116	150016562	-	Cbei_1688	-	hypothetical protein
1671	 22.49	-2	1962330..1962698	+	122	150016563	-	Cbei_1689	-	hypothetical protein
1672	 31.47	0	1962989..1963579	+	196	150016564	-	Cbei_1690	-	elongation factor P
1673	 24.59	-1	1963670..1964035	+	121	150016565	-	Cbei_1691	-	hypothetical protein
1674	 30.94	0	1964190..1965110	+	306	150016566	-	Cbei_1692	-	sporulation stage III, protein AA
1675	 30.44	0	1965098..1965616	+	172	150016567	-	Cbei_1693	-	stage III sporulation protein SpoAB
1676	 30.81	0	1965681..1965878	+	65	150016568	-	Cbei_1694	-	stage III sporulation AC family protein
1677	 29.69	0	1965890..1966273	+	127	150016569	-	Cbei_1695	-	sporulation stage III, protein AD
1678	 30.23	0	1966284..1967573	+	429	150016570	-	Cbei_1696	-	sporulation stage III, protein AE
1679	 26.83	-1	1967580..1968179	+	199	150016571	-	Cbei_1697	-	sporulation stage III, protein AF
1680	 28.99	0	1968191..1968811	+	206	150016572	-	Cbei_1698	-	sporulation stage III, protein AG
1681	 30.23	0	1968851..1969366	+	171	150016573	-	Cbei_1699	-	stage III sporulation protein AH
1682	 32.81	0	1969468..1969848	+	126	150016574	-	Cbei_1700	-	hypothetical protein
1683	 29.85	0	1969980..1970381	+	133	150016575	-	Cbei_1701	-	NusB antitermination factor
1684	 29.68	0	1970509..1971357	+	282	150016576	-	Cbei_1702	-	methylenetetrahydrofolate dehydrogenase (NADP(+))
1685	 30.50	0	1971347..1972546	+	399	150016577	-	Cbei_1703	-	exodeoxyribonuclease VII, large subunit
1686	 24.44	-1	1972559..1972783	+	74	150016578	-	Cbei_1704	-	exonuclease VII, small subunit
1687	 30.34	0	1972770..1973639	+	289	150016579	-	Cbei_1705	-	polyprenyl synthetase
1688	 31.18	0	1973657..1975513	+	618	150016580	-	Cbei_1706	-	1-deoxy-D-xylulose-5-phosphate synthase
30.63	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.