IslandPathversion 1.0

IslandPath Analysis: Chlamydia trachomatis D/UW-3/CX



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.53 STD DEV: 2.32
Chlamydia trachomatis D/UW-3/CX, complete genome - 1..1042519
895 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
46	 41.80	0	49866..51365	+	499	15604764	pepA	CT045	-	leucyl aminopeptidase
47	 41.34	0	51504..52115	+	203	15604765	hctB	CT046	-	histone-like protein 2
48	 38.94	-1	52270..53214	+	314	15604766	-	CT047	-	hypothetical protein
49	 42.44	0	53309..54022	+	237	15604767	yraL	CT048	-	SAM-dependent methyltransferase
50	 45.55	+1	54113..55585	+	490	15604768	-	CT049	-	hypothetical protein
51	 41.96	0	55644..57254	-	536	15604769	-	CT050	-	hypothetical protein
52	 41.01	0	57358..58920	-	520	15604770	-	CT051	-	hypothetical protein
53	 41.34	0	58974..60110	-	378	15604771	hemN_1	CT052	-	coproporphyrinogen III oxidase
54	 44.74	+1	60100..60546	-	148	15604772	-	CT053	-	hypothetical protein
55	 42.02	0	60878..63595	+	905	15604773	kgd	CT054	-	alpha-ketoglutarate decarboxylase
56	 42.44	0	63599..64696	+	365	15604774	sucB_1	CT055	-	dihydrolipoamide acetyltransferase
57	 43.72	0	64725..65456	-	243	15604775	-	CT056	-	hypothetical protein
58	 42.90	0	65465..67273	-	602	15604776	gcpE	CT057	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
59	 44.47	+1	67425..68528	-	367	15604777	-	CT058	-	hypothetical protein
60	 45.65	+1	68608..68883	-	91	15604778	fer	CT059	-	ferredoxin
61	 41.36	0	69065..70882	+	605	15604779	flhA	CT060	-	type III secretion system protein
62	 41.60	0	70990..71751	+	253	15604780	fliA	CT061	-	RNA polymerase sigma factor sigma-28
63	 41.32	0	71910..73148	+	412	15604781	tyrS	CT062	-	tyrosyl-tRNA synthetase
64	 43.17	0	73158..74600	+	480	15604782	gnd	CT063	-	6-phosphogluconate dehydrogenase
65	 40.41	0	74661..76469	-	602	15604783	lepA	CT064	-	GTP-binding protein LepA
66	 43.23	0	76655..78241	-	528	15604784	-	CT065	-	ADP/ATP translocase
67	 40.67	0	78592..79068	-	158	15604785	-	CT066	-	hypothetical protein
68	 41.28	0	79726..80706	+	326	15604786	ytgA	CT067	-	solute protein binding family
69	 41.54	0	80699..81478	+	259	15604787	ytgB_1	CT068	-	rRNA methylase
70	 38.64	-1	81479..82834	+	451	15604788	ytgC	CT069	-	integral membrane protein
71	 37.30	-1	82824..83780	+	318	15604789	ytgD	CT070	-	integral membrane protein
72	 41.58	0	83807..84946	+	379	15604790	yaeM	CT071	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
73	 42.80	0	85142..87001	+	619	15604791	yaeL	CT072	-	metalloprotease
74	 39.88	0	86948..87925	-	325	15604792	-	CT073	-	OMP [leader (19) peptide]
75	 40.35	0	88083..89180	-	365	15604793	recF	CT074	-	recombination protein F
76	 40.61	0	89180..90430	-	416	15604794	dnaN	CT075	-	DNA polymerase III subunit beta
77	 41.67	0	90560..91015	+	151	15604795	smpB	CT076	-	SsrA-binding protein
78	 44.16	+1	90993..91943	-	316	15604796	yojL	CT077	-	hypothetical protein
79	 44.10	+1	91913..92776	-	287	15604797	folD	CT078	-	methylene tetrahydrofolate dehydrogenase
80	 44.14	+1	92894..93337	-	147	15604798	-	CT079	-	hypothetical protein
81	 39.46	0	93614..93907	+	97	15604799	ltuB	CT080	-	late transcription unit B protein
82	 37.37	-1	93964..94260	+	98	15604800	-	CT081	-	hypothetical protein
83	 43.26	0	94270..95952	+	560	15604801	-	CT082	-	hypothetical protein
84	 41.20	0	95949..96431	+	160	15604802	-	CT083	-	hypothetical protein
85	 38.58	-1	96445..97530	-	361	15604803	-	CT084	-	phopholipase D superfamily protein
86	 42.76	0	97700..99439	-	579	15604804	-	CT085	-	hypothetical protein
87	 40.37	0	99565..99834	-	89	15604805	rpmB	CT086	-	50S ribosomal protein L28
88	 41.86	0	99983..101566	-	527	15604806	malQ	CT087	-	4-alpha-glucanotransferase
89	 38.32	-1	101570..102010	-	146	15604807	sycE	CT088	-	secretion chaperone
90	 43.13	0	102048..103313	-	421	15604808	lcrE	CT089	-	low calcium response E
91	 42.41	0	103331..105457	-	708	15604809	lcrD	CT090	-	low calcium response D
92	 39.15	-1	105457..106539	-	360	15604810	yscU	CT091	-	type III secretion system protein
93	 41.60	0	106796..107896	+	366	15604811	ychF	CT092	-	translation-associated GTPase
94	 41.61	0	107905..108810	-	301	15604812	ribF	CT093	-	bifunctional riboflavin kinase/FMN adenylyltransferase
95	 41.60	0	108767..109492	-	241	15604813	truB	CT094	-	tRNA pseudouridine synthase B
96	 37.90	-1	109530..109901	-	123	15604814	rbfA	CT095	-	ribosome-binding factor A
97	 42.74	0	109908..112586	-	892	15604815	infB	CT096	-	translation initiation factor IF-2
98	 40.23	0	112543..113847	-	434	15604816	nusA	CT097	-	transcription elongation factor NusA
99	 40.41	0	113965..115674	-	569	15604817	rpsA	CT098	-	30S ribosomal protein S1
100	 42.90	0	115919..116974	+	351	15604818	trxB	CT099	-	thioredoxin reductase
101	 43.61	0	116980..117339	+	119	15604819	acpS	CT100	-	4'-phosphopantetheinyl transferase
102	 38.31	-1	117340..117801	-	153	15604820	-	CT101	-	hypothetical protein
103	 40.69	0	117936..118397	+	153	15604821	-	CT102	-	hypothetical protein
104	 38.57	-1	118432..119328	+	298	15604822	-	CT103	-	HAD family phosphatase/phosphatase
105	 44.37	+1	119318..120214	-	298	15604823	fabI	CT104	-	enoyl-(acyl carrier protein) reductase
106	 44.50	+1	120452..122422	+	656	15604824	-	CT105	-	hypothetical protein
107	 42.00	0	122535..123446	-	303	15604825	yceC	CT106	-	pseudouridine synthetase family protein
108	 41.26	0	123493..124602	+	369	15604826	mutY	CT107	-	A/G-specific adenine glycosylase
109	 41.80	0	124652..125407	+	251	15604827	ybgI	CT108	-	Acr family transporter
110	 39.42	0	125420..126208	-	262	15604828	-	CT109	-	hypothetical protein
111	 41.28	0	126336..127970	-	544	15604829	groEL	CT110	-	chaperonin GroEL
112	 39.16	-1	128008..128316	-	102	15604830	groES	CT111	-	co-chaperonin GroES
113	 40.72	0	128488..130314	-	608	15604831	pepF	CT112	-	oligoendopeptidase F
114	 40.86	0	130617..133220	+	867	15604832	clpB	CT113	-	Clp protease ATPase
115	 42.71	0	133246..134706	+	486	15604833	-	CT114	-	hypothetical protein
116	 45.54	+1	134936..135361	+	141	15604834	-	CT115	-	inclusion membrane protein D
117	 41.10	0	135444..135842	+	132	15604835	-	CT116	-	inclusion membrane protein E
118	 47.94	+2	135847..136161	+	104	15604836	-	CT117	-	inclusion membrane protein F
119	 43.25	0	136248..136751	+	167	15604837	-	CT118	-	inclusion membrane protein G
120	 39.17	-1	136917..137738	-	273	15604838	incA	CT119	-	inclusion membrane protein A
121	 39.09	-1	137816..138058	-	80	15604839	-	CT120	-	hypothetical protein
122	 40.31	0	138142..138843	+	233	15604840	araD	CT121	-	ribulose-phosphate 3-epimerase
123	 39.61	0	138830..139387	+	185	15604841	efp_1	CT122	-	elongation factor P
124	 41.62	0	139400..139894	+	164	15604842	accB	CT123	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
125	 41.05	0	139898..141271	+	457	15604843	accC	CT124	-	acetyl-CoA carboxylase biotin carboxylase subunit
126	 40.84	0	141494..141946	+	150	15604844	rplM	CT125	-	50S ribosomal protein L13
127	 42.31	0	141972..142361	+	129	15604845	rpsI	CT126	-	30S ribosomal protein S9
128	 40.49	0	142409..143260	-	283	15604846	ydhO	CT127	-	polysaccharide hydrolase invasin repeat-containing protein
129	 41.19	0	143356..144093	-	245	15604847	adk	CT128	-	adenylate kinase
130	 40.47	0	144300..144944	+	214	15604848	glnP	CT129	-	amino acid ABC transporter ATPase
131	 42.02	0	144941..145642	+	233	15604849	glnQ	CT130	-	amino acid ABC transporter ATPase
132	 40.27	0	145645..149061	-	1138	15604850	-	CT131	-	transmembrane protein
133	 38.18	-1	149058..150335	-	425	15604851	-	CT132	-	hypothetical protein
134	 42.66	0	150413..151216	-	267	15604852	-	CT133	-	rRNA methylase
135	 45.17	+1	151671..152084	+	137	15604853	-	CT134	-	hypothetical protein
136	 45.06	+1	152143..153225	+	360	15604854	-	CT135	-	hypothetical protein
137	 43.19	0	153315..154034	+	239	15604855	-	CT136	-	lysophospholipase esterase
138	 39.48	0	154053..154898	+	281	15604856	ywlC	CT137	-	SuA5 superfamily-related protein
139	 40.72	0	154876..155823	+	315	15604857	-	CT138	-	microsomal dipeptidase
140	 42.78	0	155820..157100	-	426	15604858	oppA_1	CT139	-	oligopeptide binding protein
141	 40.61	0	157277..157963	+	228	15604859	ypdP	CT140	-	hypothetical protein
142	 42.06	0	158147..158593	+	148	15604860	secA_1	CT141	-	protein translocase
143	 41.49	0	158993..159850	+	285	15604861	-	CT142	-	hypothetical protein
144	 39.03	-1	159852..160694	+	280	15604862	-	CT143	-	hypothetical protein
145	 42.66	0	160694..161551	+	285	15604863	-	CT144	-	hypothetical protein
41.53	MEAN

2.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.