IslandPathversion 1.0

IslandPath Analysis: Chlamydia trachomatis D/UW-3/CX



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.53 STD DEV: 2.32
Chlamydia trachomatis D/UW-3/CX, complete genome - 1..1042519
895 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
788	 37.31	-1	905207..905659	+	150	15605504	-	CT771	-	hydrolase/phosphatase-like protein
789	 38.25	-1	905740..906369	-	209	15605505	ppa	CT772	-	inorganic pyrophosphatase
790	 43.52	0	906617..907657	+	346	15605506	ldh	CT773	-	leucine dehydrogenase
791	 44.22	+1	907623..908651	-	342	15605507	cysQ	CT774	-	3'(2'),5'-bisphosphate nucleotidase
792	 43.18	0	908950..909711	+	253	15605508	-	CT775	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
793	 42.57	0	909719..911332	+	537	15605509	aas	CT776	-	long chain fatty acid--[acyl-carrier-protein] ligase
794	 43.12	0	911375..912508	+	377	15605510	bioF	CT777	-	8-amino-7-oxononanoate synthase
795	 42.18	0	912427..914688	-	753	15605511	priA	CT778	-	primosome assembly protein PriA
796	 41.16	0	914643..915332	-	229	15605512	-	CT779	-	hypothetical protein
797	 41.62	0	915488..915982	+	164	15605513	-	CT780	-	protein disulfide isomerase
798	 40.35	0	916214..917794	+	526	15605514	lysS	CT781	-	lysyl-tRNA synthetase
799	 40.83	0	917791..919284	-	497	15605515	cysS	CT782	-	cysteinyl-tRNA synthetase
800	 43.05	0	919539..920588	+	349	15605516	-	CT783	-	disulfide bond isomerase
801	 44.35	+1	920666..921028	-	120	15605517	rnpA	CT784	-	ribonuclease P
802	 41.30	0	921041..921178	-	45	15605518	rpmH	CT785	-	50S ribosomal protein L34
803	 44.93	+1	921655..921792	+	45	15605519	rpmJ	CT786	-	50S ribosomal protein L36
804	 40.85	0	921816..922121	+	101	15605520	rpsN	CT787	-	30S ribosomal protein S14
805	 37.92	-1	922155..922655	-	166	15605521	-	CT788	-	leader (60) peptide-periplasmic
806	 40.48	0	922777..923028	-	83	15605522	-	CT789	-	hypothetical protein
807	 39.19	-1	923307..923801	+	164	15605523	-	CT790	-	hypothetical protein
808	 41.35	0	923846..925642	-	598	15605524	uvrC	CT791	-	excinuclease ABC subunit C
809	 40.93	0	925667..928129	-	820	15605525	mutS	CT792	-	DNA mismatch repair protein
810	 41.11	0	928192..928461	+	89	15605526	-	CT793	-	hypothetical protein
811	 40.77	0	928463..930250	+	595	15605527	dnaG	CT794	-	DNA primase
812	 44.44	+1	930335..930622	+	95	15605528	-	CT794.1	-	hypothetical protein
813	 43.50	0	930749..931240	+	163	15605529	-	CT795	-	hypothetical protein
814	 42.76	0	931322..934333	-	1003	15605530	glyQ	CT796	-	glycyl-tRNA synthetase
815	 40.39	0	934794..935402	+	202	15605531	pgsA_2	CT797	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
816	 40.28	0	935409..936833	-	474	15605532	glgA	CT798	-	glycogen synthase
817	 39.25	0	937410..937967	+	185	15605533	ctc	CT799	-	50S ribosomal protein L25/general stress protein Ctc
818	 41.67	0	937975..938514	+	179	15605534	pth	CT800	-	peptidyl-tRNA hydrolase
819	 39.23	0	938652..938990	+	112	15605535	rpsF	CT801	-	30S ribosomal protein S6
820	 43.09	0	939007..939252	+	81	15605536	rpsR	CT802	-	30S ribosomal protein S18
821	 44.64	+1	939273..939776	+	167	15605537	rplI	CT803	-	50S ribosomal protein L9
822	 43.14	0	939840..940706	+	288	15605538	ychB	CT804	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
823	 37.99	-1	941009..942361	-	450	15605539	-	CT805	-	hypothetical protein
824	 39.99	0	942540..945410	-	956	15605540	ptr	CT806	-	insulinase family/protease III
825	 42.37	0	945467..946462	-	331	15605541	plsB	CT807	-	glycerol-3-phosphate acyltransferase
826	 40.03	0	946475..948013	-	512	15605542	cafE	CT808	-	ribonuclease E
827	 43.59	0	948577..948888	+	103	15605543	-	CT809	-	hypothetical protein
828	 42.22	0	949148..949327	+	59	15605544	rpmF	CT810	-	50S ribosomal protein L32
829	 44.51	+1	949350..950315	+	321	15605545	plsX	CT811	-	putative glycerol-3-phosphate acyltransferase PlsX
830	 42.10	0	950536..955131	+	1531	15605546	pmpD	CT812	-	polymorphic outer membrane protein
831	 40.25	0	955374..956168	+	264	15605547	-	CT813	-	hypothetical protein
832	 42.79	0	956252..956653	-	133	15605548	-	CT814	-	hypothetical protein
833	 41.60	0	956572..956934	-	120	15605549	-	CT814.1	-	hypothetical protein
834	 43.06	0	957180..958556	+	458	15605550	mrsA_2	CT815	-	phosphoglucosamine mutase
835	 42.83	0	958567..960387	+	606	15605551	glmS	CT816	-	D-fructose-6-phosphate amidotransferase
836	 41.02	0	960490..961686	+	398	15605552	tyrP_1	CT817	-	tyrosine transporter
837	 40.70	0	961868..963061	+	397	15605553	tyrP_2	CT818	-	tyrosine transporter
838	 44.35	+1	963103..963819	+	238	15605554	yccA	CT819	-	transport permease
839	 42.81	0	963917..964771	-	284	15605555	ftsY	CT820	-	cell division protein FtsY
840	 42.03	0	964841..966001	+	386	15605556	sucC	CT821	-	succinyl-CoA synthetase subunit beta
841	 44.63	+1	966016..966891	+	291	15605557	sucD	CT822	-	succinyl-CoA synthetase subunit alpha
842	 43.17	0	967030..968523	+	497	15605558	htrA	CT823	-	DO Serine protease
843	 41.95	0	968723..971647	+	974	15605559	-	CT824	-	zinc metalloprotease
844	 40.19	0	971661..972944	-	427	15605560	-	CT825	-	hypothetical protein
845	 44.70	+1	972948..973739	-	263	15605561	pssA	CT826	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
846	 41.67	0	974375..977518	+	1047	15605562	nrdA	CT827	-	ribonucleotide-diphosphate reductase subunit alpha
847	 39.10	-1	977556..978596	+	346	15605563	nrdB	CT828	-	ribonucleotide-diphosphate reductase subunit beta
848	 38.67	-1	978856..979530	+	224	161723221	trmB	CT829	-	tRNA (guanine-N(7))-methyltransferase
849	 41.20	0	979646..980230	+	194	15605565	ytgB_2	CT830	-	rRNA methylase
850	 41.89	0	980227..981102	-	291	15605566	murB	CT831	-	UDP-N-acetylenolpyruvoylglucosamine reductase
851	 45.56	+1	981235..981741	-	168	15605567	nusB	CT832	-	transcription antitermination protein NusB
852	 40.91	0	982172..982699	+	175	15605568	infC	CT833	-	translation initiation factor IF-3
853	 42.56	0	982710..982904	+	64	15605569	rpmI	CT834	-	50S ribosomal protein L35
854	 43.28	0	982923..983294	+	123	15605570	rplT	CT835	-	50S ribosomal protein L20
855	 43.15	0	983301..984329	+	342	15605571	pheS	CT836	-	phenylalanyl-tRNA synthetase subunit alpha
856	 36.27	-2	984639..986615	+	658	15605572	-	CT837	-	hypothetical protein
857	 39.33	0	986612..987712	-	366	15605573	-	CT838	-	hypothetical protein
858	 37.65	-1	987715..988779	-	354	15605574	-	CT839	-	hypothetical protein
859	 38.10	-1	988877..989842	+	321	15605575	mesJ	CT840	-	PP-loop superfamily ATPase
860	 42.30	0	990003..992744	+	913	15605576	ftsH	CT841	-	ATP-dependent zinc protease
861	 43.10	0	992959..995046	-	695	15605577	pnp	CT842	-	polynucleotide phosphorylase/polyadenylase
862	 35.19	-2	995075..995344	-	89	15605578	rpsO	CT843	-	30S ribosomal protein S15
863	 39.23	0	995570..996061	+	163	15605579	yfhC	CT844	-	cytosine deaminase
864	 40.86	0	996033..996311	+	92	15605580	-	CT845	-	hypothetical protein
865	 41.56	0	996283..996987	-	234	15605581	-	CT846	-	hypothetical protein
866	 40.66	0	997122..997640	-	172	15605582	-	CT847	-	hypothetical protein
867	 40.04	0	997656..998162	-	168	15605583	-	CT848	-	hypothetical protein
868	 41.46	0	998190..998669	-	159	15605584	-	CT849	-	hypothetical protein
869	 43.39	0	998988..999176	+	62	15605585	-	CT849.1	-	hypothetical protein
870	 41.46	0	999195..1000412	+	405	15605586	-	CT850	-	hypothetical protein
871	 41.32	0	1000369..1001244	-	291	15605587	map	CT851	-	methionine aminopeptidase
872	 38.70	-1	1001302..1001916	-	204	15605588	yhgN	CT852	-	YhgN family protein
873	 44.67	+1	1001934..1002533	-	199	15605589	-	CT853	-	hypothetical protein
874	 41.81	0	1002728..1004497	-	589	15605590	-	CT854	-	ABC transporter permease fused to pyrimidine biosynthesis enzyme
875	 40.73	0	1004550..1005941	+	463	15605591	fumC	CT855	-	fumarate hydratase
876	 40.73	0	1006022..1007725	-	567	15605592	ychM	CT856	-	sulfate transporter
877	 41.71	0	1008482..1009747	+	421	15605593	-	CT857	-	Na+/H+ antiporter
878	 41.64	0	1009861..1011666	+	601	15605594	-	CT858	-	protease
879	 41.88	0	1011761..1012684	+	307	15605595	ispH	CT859	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
880	 43.86	+1	1012736..1014217	-	493	15605596	-	CT860	-	hypothetical protein
881	 42.47	0	1014229..1015749	-	506	15605597	-	CT861	-	hypothetical protein
882	 38.69	-1	1015776..1016372	-	198	15605598	lcrH_2	CT862	-	type III secretion chaperone
883	 44.86	+1	1016294..1017742	-	482	15605599	-	CT863	-	hypothetical protein
884	 40.64	0	1018603..1019505	-	300	15605600	xerD	CT864	-	site-specific tyrosine recombinase XerD
885	 40.71	0	1019754..1020743	+	329	15605601	-	CT865	-	hypothetical protein
886	 43.48	0	1020758..1022974	+	738	15605602	glgB	CT866	-	glycogen branching enzyme
887	 43.53	0	1022985..1024004	-	339	15605603	-	CT867	-	hypothetical protein
41.53	MEAN

2.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.