IslandPathversion 1.0

IslandPath Analysis: Chlamydia trachomatis D/UW-3/CX



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.53 STD DEV: 2.32
Chlamydia trachomatis D/UW-3/CX, complete genome - 1..1042519
895 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
745	 42.30	0	840026..840772	-	248	15605461	-	CT728	-	hypothetical protein
746	 42.89	0	840809..842095	-	428	15605462	serS	CT729	-	seryl-tRNA synthetase
747	 45.74	+1	842137..843264	+	375	15605463	ribD	CT730	-	riboflavin deaminase
748	 45.73	+1	843374..844648	+	424	15605464	ribA/ribB	CT731	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
749	 45.57	+1	844617..845090	+	157	15605465	ribH	CT732	-	riboflavin synthase subunit beta
750	 42.98	0	845141..846487	-	448	15605466	-	CT733	-	hypothetical protein
751	 43.99	+1	846872..847537	+	221	15605467	-	CT734	-	hypothetical protein
752	 44.74	+1	847642..849009	+	455	15605468	dagA_2	CT735	-	Na(+)-linked D-alanine glycine permease
753	 45.47	+1	849067..849519	+	150	15605469	ybcL	CT736	-	hypothetical protein
754	 45.00	+1	849528..850187	-	219	15605470	-	CT737	-	SET domain containing protein
755	 42.84	0	850184..850972	-	262	15605471	yycJ	CT738	-	Zn-dependent hydrolase
756	 41.62	0	850976..853375	-	799	15605472	ftsK	CT739	-	cell division protein FtsK
757	 40.59	0	859615..860910	-	431	15605473	dmpP	CT740	-	Na(+)-translocating NADH-quinone reductase subunit F
758	 40.00	0	861053..861397	-	114	15605474	yajC	CT741	-	preprotein translocase subunit YajC
759	 39.97	0	861502..862692	-	396	15605475	ygcA	CT742	-	rRNA methyltransferase
760	 36.24	-2	862880..863257	-	125	15605476	hctA	CT743	-	histone-like developmental protein
761	 41.28	0	863653..866118	+	821	15605477	-	CT744	-	CHLTR phosphoprotein
762	 44.24	+1	866113..867387	-	424	15605478	hemG	CT745	-	protoporphyrinogen oxidase
763	 42.07	0	867384..868757	-	457	15605479	hemN_2	CT746	-	coproporphyrinogen III oxidase
764	 42.33	0	868730..869740	-	336	15605480	hemE	CT747	-	uroporphyrinogen decarboxylase
765	 41.14	0	869753..872992	-	1079	15605481	mfd	CT748	-	transcription-repair coupling factor
766	 40.87	0	872968..875595	-	875	15605482	alaS	CT749	-	alanyl-tRNA synthetase
767	 42.98	0	881422..883422	+	666	15605483	tktB	CT750	-	transketolase
768	 44.02	+1	883419..884288	-	289	15605484	amn	CT751	-	AMP nucleosidase
769	 42.06	0	884508..885080	+	190	15605485	efp_2	CT752	-	elongation factor P
770	 43.56	0	885096..885320	-	74	15605486	-	CT753	-	hypothetical protein
771	 41.12	0	885367..886239	-	290	15605487	icc	CT754	-	phosphohydrolase
772	 43.47	0	886320..887858	-	512	15605488	groEL_3	CT755	-	60 kDa chaperonin GroEL
773	 43.46	0	888306..889658	+	450	15605489	murF	CT756	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
774	 39.17	-1	889804..890814	+	336	15605490	mraY	CT757	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
775	 42.13	0	890826..892076	+	416	15605491	murD	CT758	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
776	 41.33	0	892073..892810	+	245	15605492	nlpD	CT759	-	muramidase
777	 40.33	0	892826..893983	+	385	15605493	ftsW	CT760	-	cell division protein FtsW
778	 40.89	0	893892..894950	+	352	15605494	murG	CT761	-	N-acetylglucosaminyl transferase
779	 39.72	0	894955..897366	+	803	15605495	murC/ddlA	CT762	-	UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala ligase
780	 43.33	0	897403..897822	-	139	15605496	-	CT763	-	hypothetical protein
781	 41.14	0	897980..898786	-	268	15605497	-	CT764	-	hypothetical protein
782	 34.23	-2	898940..899272	+	110	15605498	rsbV_2	CT765	-	anti-sigma F factor antagonist
783	 42.06	0	899276..900295	+	339	15605499	miaA	CT766	-	tRNA delta(2)-isopentenylpyrophosphate transferase
784	 44.06	+1	900300..901352	-	350	15605500	-	CT767	-	hypothetical protein
785	 42.16	0	901442..903130	+	562	15605501	-	CT768	-	hypothetical protein
786	 33.33	-2	903584..903943	+	119	15605502	ybeB	CT769	-	iojap superfamily protein
787	 43.36	0	903954..905210	+	418	15605503	fabF	CT770	-	3-oxoacyl-(acyl carrier protein) synthase II
788	 37.31	-1	905207..905659	+	150	15605504	-	CT771	-	hydrolase/phosphatase-like protein
789	 38.25	-1	905740..906369	-	209	15605505	ppa	CT772	-	inorganic pyrophosphatase
790	 43.52	0	906617..907657	+	346	15605506	ldh	CT773	-	leucine dehydrogenase
791	 44.22	+1	907623..908651	-	342	15605507	cysQ	CT774	-	3'(2'),5'-bisphosphate nucleotidase
792	 43.18	0	908950..909711	+	253	15605508	-	CT775	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
793	 42.57	0	909719..911332	+	537	15605509	aas	CT776	-	long chain fatty acid--[acyl-carrier-protein] ligase
794	 43.12	0	911375..912508	+	377	15605510	bioF	CT777	-	8-amino-7-oxononanoate synthase
795	 42.18	0	912427..914688	-	753	15605511	priA	CT778	-	primosome assembly protein PriA
796	 41.16	0	914643..915332	-	229	15605512	-	CT779	-	hypothetical protein
797	 41.62	0	915488..915982	+	164	15605513	-	CT780	-	protein disulfide isomerase
798	 40.35	0	916214..917794	+	526	15605514	lysS	CT781	-	lysyl-tRNA synthetase
799	 40.83	0	917791..919284	-	497	15605515	cysS	CT782	-	cysteinyl-tRNA synthetase
800	 43.05	0	919539..920588	+	349	15605516	-	CT783	-	disulfide bond isomerase
801	 44.35	+1	920666..921028	-	120	15605517	rnpA	CT784	-	ribonuclease P
802	 41.30	0	921041..921178	-	45	15605518	rpmH	CT785	-	50S ribosomal protein L34
803	 44.93	+1	921655..921792	+	45	15605519	rpmJ	CT786	-	50S ribosomal protein L36
804	 40.85	0	921816..922121	+	101	15605520	rpsN	CT787	-	30S ribosomal protein S14
805	 37.92	-1	922155..922655	-	166	15605521	-	CT788	-	leader (60) peptide-periplasmic
806	 40.48	0	922777..923028	-	83	15605522	-	CT789	-	hypothetical protein
807	 39.19	-1	923307..923801	+	164	15605523	-	CT790	-	hypothetical protein
808	 41.35	0	923846..925642	-	598	15605524	uvrC	CT791	-	excinuclease ABC subunit C
809	 40.93	0	925667..928129	-	820	15605525	mutS	CT792	-	DNA mismatch repair protein
810	 41.11	0	928192..928461	+	89	15605526	-	CT793	-	hypothetical protein
811	 40.77	0	928463..930250	+	595	15605527	dnaG	CT794	-	DNA primase
812	 44.44	+1	930335..930622	+	95	15605528	-	CT794.1	-	hypothetical protein
813	 43.50	0	930749..931240	+	163	15605529	-	CT795	-	hypothetical protein
814	 42.76	0	931322..934333	-	1003	15605530	glyQ	CT796	-	glycyl-tRNA synthetase
815	 40.39	0	934794..935402	+	202	15605531	pgsA_2	CT797	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
816	 40.28	0	935409..936833	-	474	15605532	glgA	CT798	-	glycogen synthase
817	 39.25	0	937410..937967	+	185	15605533	ctc	CT799	-	50S ribosomal protein L25/general stress protein Ctc
818	 41.67	0	937975..938514	+	179	15605534	pth	CT800	-	peptidyl-tRNA hydrolase
819	 39.23	0	938652..938990	+	112	15605535	rpsF	CT801	-	30S ribosomal protein S6
820	 43.09	0	939007..939252	+	81	15605536	rpsR	CT802	-	30S ribosomal protein S18
821	 44.64	+1	939273..939776	+	167	15605537	rplI	CT803	-	50S ribosomal protein L9
822	 43.14	0	939840..940706	+	288	15605538	ychB	CT804	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
823	 37.99	-1	941009..942361	-	450	15605539	-	CT805	-	hypothetical protein
824	 39.99	0	942540..945410	-	956	15605540	ptr	CT806	-	insulinase family/protease III
825	 42.37	0	945467..946462	-	331	15605541	plsB	CT807	-	glycerol-3-phosphate acyltransferase
826	 40.03	0	946475..948013	-	512	15605542	cafE	CT808	-	ribonuclease E
827	 43.59	0	948577..948888	+	103	15605543	-	CT809	-	hypothetical protein
828	 42.22	0	949148..949327	+	59	15605544	rpmF	CT810	-	50S ribosomal protein L32
829	 44.51	+1	949350..950315	+	321	15605545	plsX	CT811	-	putative glycerol-3-phosphate acyltransferase PlsX
830	 42.10	0	950536..955131	+	1531	15605546	pmpD	CT812	-	polymorphic outer membrane protein
831	 40.25	0	955374..956168	+	264	15605547	-	CT813	-	hypothetical protein
832	 42.79	0	956252..956653	-	133	15605548	-	CT814	-	hypothetical protein
833	 41.60	0	956572..956934	-	120	15605549	-	CT814.1	-	hypothetical protein
834	 43.06	0	957180..958556	+	458	15605550	mrsA_2	CT815	-	phosphoglucosamine mutase
835	 42.83	0	958567..960387	+	606	15605551	glmS	CT816	-	D-fructose-6-phosphate amidotransferase
836	 41.02	0	960490..961686	+	398	15605552	tyrP_1	CT817	-	tyrosine transporter
837	 40.70	0	961868..963061	+	397	15605553	tyrP_2	CT818	-	tyrosine transporter
838	 44.35	+1	963103..963819	+	238	15605554	yccA	CT819	-	transport permease
839	 42.81	0	963917..964771	-	284	15605555	ftsY	CT820	-	cell division protein FtsY
840	 42.03	0	964841..966001	+	386	15605556	sucC	CT821	-	succinyl-CoA synthetase subunit beta
841	 44.63	+1	966016..966891	+	291	15605557	sucD	CT822	-	succinyl-CoA synthetase subunit alpha
842	 43.17	0	967030..968523	+	497	15605558	htrA	CT823	-	DO Serine protease
843	 41.95	0	968723..971647	+	974	15605559	-	CT824	-	zinc metalloprotease
844	 40.19	0	971661..972944	-	427	15605560	-	CT825	-	hypothetical protein
41.53	MEAN

2.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.