IslandPathversion 1.0

IslandPath Analysis: Chlamydia trachomatis D/UW-3/CX



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.53 STD DEV: 2.32
Chlamydia trachomatis D/UW-3/CX, complete genome - 1..1042519
895 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
715	 42.10	0	800533..801867	-	444	15605431	trmE	CT698	-	tRNA modification GTPase TrmE
716	 42.27	0	802134..803039	+	301	15605432	psdD	CT699	-	phosphatidylserine decarboxylase
717	 44.72	+1	803104..804429	+	441	15605433	-	CT700	-	hypothetical protein
718	 43.44	0	804688..807597	+	969	15605434	secA	CT701	-	preprotein translocase subunit SecA
719	 40.53	0	807691..808218	-	175	15605435	-	CT702	-	hypothetical protein
720	 41.48	0	808295..809767	-	490	15605436	engA	CT703	-	GTP-binding protein EngA
721	 43.15	0	809883..811115	-	410	15605437	pcnB_2	CT704	-	polyA polymerase
722	 41.98	0	811130..812389	-	419	15605438	clpX	CT705	-	ATP-dependent protease ATP-binding subunit
723	 42.97	0	812399..813010	-	203	15605439	clpP	CT706	-	ATP-dependent Clp protease proteolytic subunit
724	 39.05	-1	813177..814505	-	442	15605440	tig	CT707	-	trigger factor
725	 40.41	0	814862..818353	+	1163	15605441	-	CT708	-	SWF/SNF family helicase
726	 45.23	+1	818358..819458	+	366	15605442	mreB	CT709	-	rod shape protein-sugar kinase
727	 46.06	+1	819455..821254	+	599	15605443	pckA	CT710	-	phosphoenolpyruvate carboxykinase
728	 39.11	-1	821366..823669	+	767	15605444	-	CT711	-	hypothetical protein
729	 41.43	0	823696..824868	+	390	15605445	-	CT712	-	hypothetical protein
730	 44.28	+1	824894..825916	-	340	15605446	porB	CT713	-	outer membrane protein B
731	 46.37	+2	826049..827053	-	334	15605447	gpsA	CT714	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
732	 41.52	0	827050..828417	-	455	15605448	-	CT715	-	UDP-N-acetylglucosamine pyrophosphorylase
733	 35.79	-2	828429..828794	-	121	15605449	-	CT716	-	hypothetical protein
734	 44.75	+1	828787..830091	-	434	15605450	fliI	CT717	-	type III secretion system ATPase
735	 40.76	0	830165..830689	-	174	15605451	-	CT718	-	hypothetical protein
736	 41.69	0	830694..831698	-	334	15605452	fliF	CT719	-	type III secretion system protein
737	 44.19	+1	831971..832753	-	260	15605453	-	CT720	-	NifU-related protein
738	 45.89	+1	832750..833904	-	384	15605454	yfhO_2	CT721	-	NifS-related protein
739	 43.32	0	833859..834539	-	226	15605455	pgm	CT722	-	phosphoglyceromutase
740	 45.32	+1	834836..835561	+	241	15605456	yjbC	CT723	-	ribosomal large subunit pseudouridine synthase B
741	 41.90	0	835680..836204	+	174	15605457	-	CT724	-	hypothetical protein
742	 44.86	+1	836231..836785	+	184	15605458	birA	CT725	-	biotin--protein ligase
743	 42.28	0	836792..837931	-	379	15605459	rodA	CT726	-	rod shape protein
744	 44.90	+1	838023..840002	-	659	15605460	zntA	CT727	-	metal transport P-type ATPase
745	 42.30	0	840026..840772	-	248	15605461	-	CT728	-	hypothetical protein
746	 42.89	0	840809..842095	-	428	15605462	serS	CT729	-	seryl-tRNA synthetase
747	 45.74	+1	842137..843264	+	375	15605463	ribD	CT730	-	riboflavin deaminase
748	 45.73	+1	843374..844648	+	424	15605464	ribA/ribB	CT731	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
749	 45.57	+1	844617..845090	+	157	15605465	ribH	CT732	-	riboflavin synthase subunit beta
750	 42.98	0	845141..846487	-	448	15605466	-	CT733	-	hypothetical protein
751	 43.99	+1	846872..847537	+	221	15605467	-	CT734	-	hypothetical protein
752	 44.74	+1	847642..849009	+	455	15605468	dagA_2	CT735	-	Na(+)-linked D-alanine glycine permease
753	 45.47	+1	849067..849519	+	150	15605469	ybcL	CT736	-	hypothetical protein
754	 45.00	+1	849528..850187	-	219	15605470	-	CT737	-	SET domain containing protein
755	 42.84	0	850184..850972	-	262	15605471	yycJ	CT738	-	Zn-dependent hydrolase
756	 41.62	0	850976..853375	-	799	15605472	ftsK	CT739	-	cell division protein FtsK
757	 40.59	0	859615..860910	-	431	15605473	dmpP	CT740	-	Na(+)-translocating NADH-quinone reductase subunit F
758	 40.00	0	861053..861397	-	114	15605474	yajC	CT741	-	preprotein translocase subunit YajC
759	 39.97	0	861502..862692	-	396	15605475	ygcA	CT742	-	rRNA methyltransferase
760	 36.24	-2	862880..863257	-	125	15605476	hctA	CT743	-	histone-like developmental protein
761	 41.28	0	863653..866118	+	821	15605477	-	CT744	-	CHLTR phosphoprotein
762	 44.24	+1	866113..867387	-	424	15605478	hemG	CT745	-	protoporphyrinogen oxidase
763	 42.07	0	867384..868757	-	457	15605479	hemN_2	CT746	-	coproporphyrinogen III oxidase
764	 42.33	0	868730..869740	-	336	15605480	hemE	CT747	-	uroporphyrinogen decarboxylase
765	 41.14	0	869753..872992	-	1079	15605481	mfd	CT748	-	transcription-repair coupling factor
766	 40.87	0	872968..875595	-	875	15605482	alaS	CT749	-	alanyl-tRNA synthetase
767	 42.98	0	881422..883422	+	666	15605483	tktB	CT750	-	transketolase
768	 44.02	+1	883419..884288	-	289	15605484	amn	CT751	-	AMP nucleosidase
769	 42.06	0	884508..885080	+	190	15605485	efp_2	CT752	-	elongation factor P
770	 43.56	0	885096..885320	-	74	15605486	-	CT753	-	hypothetical protein
771	 41.12	0	885367..886239	-	290	15605487	icc	CT754	-	phosphohydrolase
772	 43.47	0	886320..887858	-	512	15605488	groEL_3	CT755	-	60 kDa chaperonin GroEL
773	 43.46	0	888306..889658	+	450	15605489	murF	CT756	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
774	 39.17	-1	889804..890814	+	336	15605490	mraY	CT757	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
775	 42.13	0	890826..892076	+	416	15605491	murD	CT758	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
776	 41.33	0	892073..892810	+	245	15605492	nlpD	CT759	-	muramidase
777	 40.33	0	892826..893983	+	385	15605493	ftsW	CT760	-	cell division protein FtsW
778	 40.89	0	893892..894950	+	352	15605494	murG	CT761	-	N-acetylglucosaminyl transferase
779	 39.72	0	894955..897366	+	803	15605495	murC/ddlA	CT762	-	UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala ligase
780	 43.33	0	897403..897822	-	139	15605496	-	CT763	-	hypothetical protein
781	 41.14	0	897980..898786	-	268	15605497	-	CT764	-	hypothetical protein
782	 34.23	-2	898940..899272	+	110	15605498	rsbV_2	CT765	-	anti-sigma F factor antagonist
783	 42.06	0	899276..900295	+	339	15605499	miaA	CT766	-	tRNA delta(2)-isopentenylpyrophosphate transferase
784	 44.06	+1	900300..901352	-	350	15605500	-	CT767	-	hypothetical protein
785	 42.16	0	901442..903130	+	562	15605501	-	CT768	-	hypothetical protein
786	 33.33	-2	903584..903943	+	119	15605502	ybeB	CT769	-	iojap superfamily protein
787	 43.36	0	903954..905210	+	418	15605503	fabF	CT770	-	3-oxoacyl-(acyl carrier protein) synthase II
788	 37.31	-1	905207..905659	+	150	15605504	-	CT771	-	hydrolase/phosphatase-like protein
789	 38.25	-1	905740..906369	-	209	15605505	ppa	CT772	-	inorganic pyrophosphatase
790	 43.52	0	906617..907657	+	346	15605506	ldh	CT773	-	leucine dehydrogenase
791	 44.22	+1	907623..908651	-	342	15605507	cysQ	CT774	-	3'(2'),5'-bisphosphate nucleotidase
792	 43.18	0	908950..909711	+	253	15605508	-	CT775	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
793	 42.57	0	909719..911332	+	537	15605509	aas	CT776	-	long chain fatty acid--[acyl-carrier-protein] ligase
794	 43.12	0	911375..912508	+	377	15605510	bioF	CT777	-	8-amino-7-oxononanoate synthase
795	 42.18	0	912427..914688	-	753	15605511	priA	CT778	-	primosome assembly protein PriA
796	 41.16	0	914643..915332	-	229	15605512	-	CT779	-	hypothetical protein
797	 41.62	0	915488..915982	+	164	15605513	-	CT780	-	protein disulfide isomerase
798	 40.35	0	916214..917794	+	526	15605514	lysS	CT781	-	lysyl-tRNA synthetase
799	 40.83	0	917791..919284	-	497	15605515	cysS	CT782	-	cysteinyl-tRNA synthetase
800	 43.05	0	919539..920588	+	349	15605516	-	CT783	-	disulfide bond isomerase
801	 44.35	+1	920666..921028	-	120	15605517	rnpA	CT784	-	ribonuclease P
802	 41.30	0	921041..921178	-	45	15605518	rpmH	CT785	-	50S ribosomal protein L34
803	 44.93	+1	921655..921792	+	45	15605519	rpmJ	CT786	-	50S ribosomal protein L36
804	 40.85	0	921816..922121	+	101	15605520	rpsN	CT787	-	30S ribosomal protein S14
805	 37.92	-1	922155..922655	-	166	15605521	-	CT788	-	leader (60) peptide-periplasmic
806	 40.48	0	922777..923028	-	83	15605522	-	CT789	-	hypothetical protein
807	 39.19	-1	923307..923801	+	164	15605523	-	CT790	-	hypothetical protein
808	 41.35	0	923846..925642	-	598	15605524	uvrC	CT791	-	excinuclease ABC subunit C
809	 40.93	0	925667..928129	-	820	15605525	mutS	CT792	-	DNA mismatch repair protein
810	 41.11	0	928192..928461	+	89	15605526	-	CT793	-	hypothetical protein
811	 40.77	0	928463..930250	+	595	15605527	dnaG	CT794	-	DNA primase
812	 44.44	+1	930335..930622	+	95	15605528	-	CT794.1	-	hypothetical protein
813	 43.50	0	930749..931240	+	163	15605529	-	CT795	-	hypothetical protein
814	 42.76	0	931322..934333	-	1003	15605530	glyQ	CT796	-	glycyl-tRNA synthetase
41.53	MEAN

2.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.