IslandPathversion 1.0

IslandPath Analysis: Chlamydia trachomatis D/UW-3/CX



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.53 STD DEV: 2.32
Chlamydia trachomatis D/UW-3/CX, complete genome - 1..1042519
895 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
675	 44.98	+1	753544..754548	+	334	15605391	sfhB	CT658	-	ribosomal large subunit pseudouridine synthase D
676	 38.82	-1	754647..754883	+	78	15605392	-	CT659	-	hypothetical protein
677	 42.97	0	755022..756494	-	490	15605393	gyrA_2	CT660	-	DNA topoisomerase IV subunit A
678	 40.10	0	756509..758326	-	605	15605394	gyrB_2	CT661	-	DNA topoisomerase IV subunit B
679	 44.35	+1	758706..759713	+	335	15605395	hemA	CT662	-	glutamyl-tRNA reductase
680	 45.02	+1	760425..760826	+	133	15605396	-	CT663	-	hypothetical protein
681	 42.45	0	760830..763319	+	829	15605397	-	CT664	-	FHA domain-containing protein
682	 41.27	0	763363..763614	+	83	15605398	-	CT665	-	hypothetical protein
683	 39.29	0	763641..763892	+	83	15605399	-	CT666	-	hypothetical protein
684	 40.00	0	763911..764360	+	149	15605400	-	CT667	-	hypothetical protein
685	 42.26	0	764380..765051	+	223	15605401	-	CT668	-	hypothetical protein
686	 44.92	+1	765053..766381	+	442	15605402	yscN	CT669	-	type III secretion system ATPase
687	 41.62	0	766404..766910	+	168	15605403	-	CT670	-	hypothetical protein
688	 42.49	0	766914..767765	+	283	15605404	-	CT671	-	hypothetical protein
689	 40.64	0	767775..768896	+	373	15605405	fliN	CT672	-	type III secretion system protein
690	 42.97	0	769031..770503	+	490	15605406	pkn5	CT673	-	S/T protein kinase
691	 42.19	0	770500..773265	+	921	15605407	yscC	CT674	-	Yop proteins translocation protein C/general secretion pathway protein
692	 41.64	0	773578..774648	-	356	15605408	karG	CT675	-	ATP:guanido phosphotransferase
693	 43.10	0	774638..775159	-	173	15605409	-	CT676	-	hypothetical protein
694	 44.81	+1	775530..776069	-	179	15605410	frr	CT677	-	ribosome recycling factor
695	 45.26	+1	776066..776803	-	245	15605411	pyrH	CT678	-	uridylate kinase
696	 43.82	0	776816..777664	-	282	15605412	tsf	CT679	-	elongation factor Ts
697	 42.05	0	777661..778509	-	282	15605413	rpsB	CT680	-	30S ribosomal protein S2
698	 43.40	0	778879..780060	-	393	15605414	ompA	CT681	-	major outer membrane protein
699	 42.40	0	780668..783910	+	1080	15605415	pbpB	CT682	-	penicillin-binding protein
700	 39.38	0	783974..784981	+	335	15605416	-	CT683	-	TPR-motif-containing protein
701	 42.29	0	785324..786775	+	483	15605417	-	CT684	-	cysteine desulfurase activator complex subunit SufB
702	 42.06	0	786778..787545	+	255	15605418	-	CT685	-	ABC transporter ATP-binding protein
703	 43.94	+1	787549..788736	+	395	15605419	-	CT686	-	ABC transporter membrane protein
704	 43.78	0	788729..789934	+	401	15605420	yfhO_1	CT687	-	cysteine desulfurase
705	 41.13	0	790070..790915	+	281	15605421	parB	CT688	-	chromosome partitioning protein
706	 42.36	0	790907..791737	-	276	15605422	dppF	CT689	-	peptide ABC transporter ATPase
707	 40.99	0	791730..792695	-	321	15605423	dppD	CT690	-	peptide ABC transporter ATPase
708	 41.04	0	792856..793530	+	224	15605424	-	CT691	-	hypothetical protein
709	 44.42	+1	793533..794813	+	426	15605425	-	CT692	-	inorganic phosphate transporter
710	 45.30	+1	794941..796152	+	403	15605426	pgk	CT693	-	phosphoglycerate kinase
711	 41.98	0	796412..797383	+	323	15605427	-	CT694	-	hypothetical protein
712	 44.61	+1	797434..798630	+	398	15605428	-	CT695	-	hypothetical protein
713	 41.31	0	798716..799894	+	392	15605429	-	CT696	-	hypothetical protein
714	 41.67	0	799891..800526	-	211	15605430	nth	CT697	-	endonuclease III
715	 42.10	0	800533..801867	-	444	15605431	trmE	CT698	-	tRNA modification GTPase TrmE
716	 42.27	0	802134..803039	+	301	15605432	psdD	CT699	-	phosphatidylserine decarboxylase
717	 44.72	+1	803104..804429	+	441	15605433	-	CT700	-	hypothetical protein
718	 43.44	0	804688..807597	+	969	15605434	secA	CT701	-	preprotein translocase subunit SecA
719	 40.53	0	807691..808218	-	175	15605435	-	CT702	-	hypothetical protein
720	 41.48	0	808295..809767	-	490	15605436	engA	CT703	-	GTP-binding protein EngA
721	 43.15	0	809883..811115	-	410	15605437	pcnB_2	CT704	-	polyA polymerase
722	 41.98	0	811130..812389	-	419	15605438	clpX	CT705	-	ATP-dependent protease ATP-binding subunit
723	 42.97	0	812399..813010	-	203	15605439	clpP	CT706	-	ATP-dependent Clp protease proteolytic subunit
724	 39.05	-1	813177..814505	-	442	15605440	tig	CT707	-	trigger factor
725	 40.41	0	814862..818353	+	1163	15605441	-	CT708	-	SWF/SNF family helicase
726	 45.23	+1	818358..819458	+	366	15605442	mreB	CT709	-	rod shape protein-sugar kinase
727	 46.06	+1	819455..821254	+	599	15605443	pckA	CT710	-	phosphoenolpyruvate carboxykinase
728	 39.11	-1	821366..823669	+	767	15605444	-	CT711	-	hypothetical protein
729	 41.43	0	823696..824868	+	390	15605445	-	CT712	-	hypothetical protein
730	 44.28	+1	824894..825916	-	340	15605446	porB	CT713	-	outer membrane protein B
731	 46.37	+2	826049..827053	-	334	15605447	gpsA	CT714	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
732	 41.52	0	827050..828417	-	455	15605448	-	CT715	-	UDP-N-acetylglucosamine pyrophosphorylase
733	 35.79	-2	828429..828794	-	121	15605449	-	CT716	-	hypothetical protein
734	 44.75	+1	828787..830091	-	434	15605450	fliI	CT717	-	type III secretion system ATPase
735	 40.76	0	830165..830689	-	174	15605451	-	CT718	-	hypothetical protein
736	 41.69	0	830694..831698	-	334	15605452	fliF	CT719	-	type III secretion system protein
737	 44.19	+1	831971..832753	-	260	15605453	-	CT720	-	NifU-related protein
738	 45.89	+1	832750..833904	-	384	15605454	yfhO_2	CT721	-	NifS-related protein
739	 43.32	0	833859..834539	-	226	15605455	pgm	CT722	-	phosphoglyceromutase
740	 45.32	+1	834836..835561	+	241	15605456	yjbC	CT723	-	ribosomal large subunit pseudouridine synthase B
741	 41.90	0	835680..836204	+	174	15605457	-	CT724	-	hypothetical protein
742	 44.86	+1	836231..836785	+	184	15605458	birA	CT725	-	biotin--protein ligase
743	 42.28	0	836792..837931	-	379	15605459	rodA	CT726	-	rod shape protein
744	 44.90	+1	838023..840002	-	659	15605460	zntA	CT727	-	metal transport P-type ATPase
745	 42.30	0	840026..840772	-	248	15605461	-	CT728	-	hypothetical protein
746	 42.89	0	840809..842095	-	428	15605462	serS	CT729	-	seryl-tRNA synthetase
747	 45.74	+1	842137..843264	+	375	15605463	ribD	CT730	-	riboflavin deaminase
748	 45.73	+1	843374..844648	+	424	15605464	ribA/ribB	CT731	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
749	 45.57	+1	844617..845090	+	157	15605465	ribH	CT732	-	riboflavin synthase subunit beta
750	 42.98	0	845141..846487	-	448	15605466	-	CT733	-	hypothetical protein
751	 43.99	+1	846872..847537	+	221	15605467	-	CT734	-	hypothetical protein
752	 44.74	+1	847642..849009	+	455	15605468	dagA_2	CT735	-	Na(+)-linked D-alanine glycine permease
753	 45.47	+1	849067..849519	+	150	15605469	ybcL	CT736	-	hypothetical protein
754	 45.00	+1	849528..850187	-	219	15605470	-	CT737	-	SET domain containing protein
755	 42.84	0	850184..850972	-	262	15605471	yycJ	CT738	-	Zn-dependent hydrolase
756	 41.62	0	850976..853375	-	799	15605472	ftsK	CT739	-	cell division protein FtsK
757	 40.59	0	859615..860910	-	431	15605473	dmpP	CT740	-	Na(+)-translocating NADH-quinone reductase subunit F
758	 40.00	0	861053..861397	-	114	15605474	yajC	CT741	-	preprotein translocase subunit YajC
759	 39.97	0	861502..862692	-	396	15605475	ygcA	CT742	-	rRNA methyltransferase
760	 36.24	-2	862880..863257	-	125	15605476	hctA	CT743	-	histone-like developmental protein
761	 41.28	0	863653..866118	+	821	15605477	-	CT744	-	CHLTR phosphoprotein
762	 44.24	+1	866113..867387	-	424	15605478	hemG	CT745	-	protoporphyrinogen oxidase
763	 42.07	0	867384..868757	-	457	15605479	hemN_2	CT746	-	coproporphyrinogen III oxidase
764	 42.33	0	868730..869740	-	336	15605480	hemE	CT747	-	uroporphyrinogen decarboxylase
765	 41.14	0	869753..872992	-	1079	15605481	mfd	CT748	-	transcription-repair coupling factor
766	 40.87	0	872968..875595	-	875	15605482	alaS	CT749	-	alanyl-tRNA synthetase
767	 42.98	0	881422..883422	+	666	15605483	tktB	CT750	-	transketolase
768	 44.02	+1	883419..884288	-	289	15605484	amn	CT751	-	AMP nucleosidase
769	 42.06	0	884508..885080	+	190	15605485	efp_2	CT752	-	elongation factor P
770	 43.56	0	885096..885320	-	74	15605486	-	CT753	-	hypothetical protein
771	 41.12	0	885367..886239	-	290	15605487	icc	CT754	-	phosphohydrolase
772	 43.47	0	886320..887858	-	512	15605488	groEL_3	CT755	-	60 kDa chaperonin GroEL
773	 43.46	0	888306..889658	+	450	15605489	murF	CT756	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
774	 39.17	-1	889804..890814	+	336	15605490	mraY	CT757	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
41.53	MEAN

2.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.