IslandPathversion 1.0

IslandPath Analysis: Chlamydia trachomatis D/UW-3/CX



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.53 STD DEV: 2.32
Chlamydia trachomatis D/UW-3/CX, complete genome - 1..1042519
895 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
628	 42.42	0	692297..693649	-	450	15605344	folP	CT613	-	dihydropteroate synthase
629	 41.07	0	693646..694020	-	124	15605345	folX	CT614	-	dihydroneopterin aldolase
630	 42.60	0	694039..695754	-	571	15605346	rpoD	CT615	-	RNA polymerase sigma factor
631	 42.02	0	695903..697192	-	429	15605347	-	CT616	-	hypothetical protein
632	 42.76	0	697641..697937	+	98	15605348	rpsT	CT617	-	30S ribosomal protein S20
633	 45.69	+1	698170..698970	+	266	15605349	-	CT618	-	hypothetical protein
634	 39.14	-1	699026..701659	-	877	15605350	-	CT619	-	hypothetical protein
635	 40.21	0	701774..704290	+	838	15605351	-	CT620	-	hypothetical protein
636	 41.14	0	704354..706852	-	832	15605352	-	CT621	-	hypothetical protein
637	 43.00	0	707080..709023	-	647	15605353	-	CT622	-	hypothetical protein
638	 41.42	0	709131..710429	-	432	15605354	-	CT623	-	hypothetical protein
639	 40.78	0	710672..712282	-	536	15605355	mviN	CT624	-	integral membrane protein
640	 43.83	0	712455..713321	+	288	15605356	nfo	CT625	-	endonuclease IV
641	 40.32	0	713418..714047	-	209	15605357	rpsD	CT626	-	30S ribosomal protein S4
642	 41.16	0	714431..715414	+	327	15605358	yceA	CT627	-	hypothetical protein
643	 41.55	0	715486..716361	-	291	15605359	ispA	CT628	-	dimethylallyltransferase
644	 39.48	0	716417..717034	-	205	15605360	glmU	CT629	-	glucosamine-1-phosphate acetyltransferase
645	 35.53	-2	717087..717770	-	227	15605361	cpxR	CT630	-	HTH transcriptional regulatory protein and receiver domain
646	 34.90	-2	717949..718203	+	84	15605362	-	CT631	-	hypothetical protein
647	 41.89	0	718384..719973	-	529	15605363	-	CT632	-	hypothetical protein
648	 40.51	0	720271..721287	+	338	15605364	hemB	CT633	-	delta-aminolevulinic acid dehydratase
649	 40.41	0	721313..722710	-	465	15605365	-	CT634	-	Na(+)-translocating NADH-quinone reductase subunit A
650	 35.40	-2	722732..723166	-	144	15605366	-	CT635	-	hypothetical protein
651	 38.59	-1	723280..725427	+	715	15605367	greA	CT636	-	fused transcript cleavage factor/uncharacterized domain-containing protein
652	 40.98	0	725615..726817	+	400	15605368	tyrB	CT637	-	aromatic amino acid aminotransferase
653	 42.19	0	726792..727559	+	255	15605369	-	CT638	-	hypothetical protein
654	 40.00	0	727592..727801	+	69	15605370	-	CT638.1	-	hypothetical protein
655	 40.08	0	727817..730897	-	1026	15605371	recB	CT639	-	exodeoxyribonuclease V beta chain
656	 39.57	0	730899..733913	-	1004	15605372	recC	CT640	-	exodeoxyribonuclease V gamma chain
657	 39.23	0	733926..735605	+	559	15605373	ygeD	CT641	-	efflux protein
658	 39.34	0	735625..736440	-	271	15605374	-	CT642	-	hypothetical protein
659	 41.49	0	737335..739908	+	857	15605375	topA	CT643	-	fused DNA topoisomerase I/SWI domain-containing protein
660	 45.37	+1	739938..740942	-	334	15605376	yohI	CT644	-	oxidoreductase
661	 37.71	-1	740921..741217	-	98	15605377	-	CT645	-	integral membrane protein
662	 43.55	0	741318..742697	+	459	15605378	-	CT646	-	hypothetical protein
663	 46.29	+2	742697..743275	+	192	15605379	-	CT647	-	hypothetical protein
664	 41.49	0	743266..744540	+	424	15605380	-	CT648	-	hypothetical protein
665	 43.95	+1	744543..745079	+	178	15605381	ygfA	CT649	-	formyltetrahydrofolate synthetase
666	 44.10	+1	745340..746398	+	352	15605382	recA	CT650	-	recombinase A
667	 40.83	0	746684..748510	+	608	15605383	-	CT651	-	hypothetical protein
668	 42.05	0	748507..749997	+	496	15605384	recD_2	CT652	-	exodeoxyribonuclease V alpha chain
669	 42.22	0	750063..750242	+	59	15605385	-	CT652.1	-	hypothetical protein
670	 40.97	0	750343..751062	-	239	15605386	yhbG	CT653	-	ABC transporter ATP-binding protein
671	 40.29	0	751071..751559	-	162	15605387	-	CT654	-	hypothetical protein
672	 43.33	0	751556..752365	-	269	15605388	kdsA	CT655	-	2-dehydro-3-deoxyphosphooctonate aldolase
673	 42.86	0	752850..753143	+	97	15605389	-	CT656	-	hypothetical protein
674	 39.94	0	753143..753460	+	105	15605390	-	CT657	-	hypothetical protein
675	 44.98	+1	753544..754548	+	334	15605391	sfhB	CT658	-	ribosomal large subunit pseudouridine synthase D
676	 38.82	-1	754647..754883	+	78	15605392	-	CT659	-	hypothetical protein
677	 42.97	0	755022..756494	-	490	15605393	gyrA_2	CT660	-	DNA topoisomerase IV subunit A
678	 40.10	0	756509..758326	-	605	15605394	gyrB_2	CT661	-	DNA topoisomerase IV subunit B
679	 44.35	+1	758706..759713	+	335	15605395	hemA	CT662	-	glutamyl-tRNA reductase
680	 45.02	+1	760425..760826	+	133	15605396	-	CT663	-	hypothetical protein
681	 42.45	0	760830..763319	+	829	15605397	-	CT664	-	FHA domain-containing protein
682	 41.27	0	763363..763614	+	83	15605398	-	CT665	-	hypothetical protein
683	 39.29	0	763641..763892	+	83	15605399	-	CT666	-	hypothetical protein
684	 40.00	0	763911..764360	+	149	15605400	-	CT667	-	hypothetical protein
685	 42.26	0	764380..765051	+	223	15605401	-	CT668	-	hypothetical protein
686	 44.92	+1	765053..766381	+	442	15605402	yscN	CT669	-	type III secretion system ATPase
687	 41.62	0	766404..766910	+	168	15605403	-	CT670	-	hypothetical protein
688	 42.49	0	766914..767765	+	283	15605404	-	CT671	-	hypothetical protein
689	 40.64	0	767775..768896	+	373	15605405	fliN	CT672	-	type III secretion system protein
690	 42.97	0	769031..770503	+	490	15605406	pkn5	CT673	-	S/T protein kinase
691	 42.19	0	770500..773265	+	921	15605407	yscC	CT674	-	Yop proteins translocation protein C/general secretion pathway protein
692	 41.64	0	773578..774648	-	356	15605408	karG	CT675	-	ATP:guanido phosphotransferase
693	 43.10	0	774638..775159	-	173	15605409	-	CT676	-	hypothetical protein
694	 44.81	+1	775530..776069	-	179	15605410	frr	CT677	-	ribosome recycling factor
695	 45.26	+1	776066..776803	-	245	15605411	pyrH	CT678	-	uridylate kinase
696	 43.82	0	776816..777664	-	282	15605412	tsf	CT679	-	elongation factor Ts
697	 42.05	0	777661..778509	-	282	15605413	rpsB	CT680	-	30S ribosomal protein S2
698	 43.40	0	778879..780060	-	393	15605414	ompA	CT681	-	major outer membrane protein
699	 42.40	0	780668..783910	+	1080	15605415	pbpB	CT682	-	penicillin-binding protein
700	 39.38	0	783974..784981	+	335	15605416	-	CT683	-	TPR-motif-containing protein
701	 42.29	0	785324..786775	+	483	15605417	-	CT684	-	cysteine desulfurase activator complex subunit SufB
702	 42.06	0	786778..787545	+	255	15605418	-	CT685	-	ABC transporter ATP-binding protein
703	 43.94	+1	787549..788736	+	395	15605419	-	CT686	-	ABC transporter membrane protein
704	 43.78	0	788729..789934	+	401	15605420	yfhO_1	CT687	-	cysteine desulfurase
705	 41.13	0	790070..790915	+	281	15605421	parB	CT688	-	chromosome partitioning protein
706	 42.36	0	790907..791737	-	276	15605422	dppF	CT689	-	peptide ABC transporter ATPase
707	 40.99	0	791730..792695	-	321	15605423	dppD	CT690	-	peptide ABC transporter ATPase
708	 41.04	0	792856..793530	+	224	15605424	-	CT691	-	hypothetical protein
709	 44.42	+1	793533..794813	+	426	15605425	-	CT692	-	inorganic phosphate transporter
710	 45.30	+1	794941..796152	+	403	15605426	pgk	CT693	-	phosphoglycerate kinase
711	 41.98	0	796412..797383	+	323	15605427	-	CT694	-	hypothetical protein
712	 44.61	+1	797434..798630	+	398	15605428	-	CT695	-	hypothetical protein
713	 41.31	0	798716..799894	+	392	15605429	-	CT696	-	hypothetical protein
714	 41.67	0	799891..800526	-	211	15605430	nth	CT697	-	endonuclease III
715	 42.10	0	800533..801867	-	444	15605431	trmE	CT698	-	tRNA modification GTPase TrmE
716	 42.27	0	802134..803039	+	301	15605432	psdD	CT699	-	phosphatidylserine decarboxylase
717	 44.72	+1	803104..804429	+	441	15605433	-	CT700	-	hypothetical protein
718	 43.44	0	804688..807597	+	969	15605434	secA	CT701	-	preprotein translocase subunit SecA
719	 40.53	0	807691..808218	-	175	15605435	-	CT702	-	hypothetical protein
720	 41.48	0	808295..809767	-	490	15605436	engA	CT703	-	GTP-binding protein EngA
721	 43.15	0	809883..811115	-	410	15605437	pcnB_2	CT704	-	polyA polymerase
722	 41.98	0	811130..812389	-	419	15605438	clpX	CT705	-	ATP-dependent protease ATP-binding subunit
723	 42.97	0	812399..813010	-	203	15605439	clpP	CT706	-	ATP-dependent Clp protease proteolytic subunit
724	 39.05	-1	813177..814505	-	442	15605440	tig	CT707	-	trigger factor
725	 40.41	0	814862..818353	+	1163	15605441	-	CT708	-	SWF/SNF family helicase
726	 45.23	+1	818358..819458	+	366	15605442	mreB	CT709	-	rod shape protein-sugar kinase
727	 46.06	+1	819455..821254	+	599	15605443	pckA	CT710	-	phosphoenolpyruvate carboxykinase
41.53	MEAN

2.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.