IslandPathversion 1.0

IslandPath Analysis: Chlamydia trachomatis D/UW-3/CX



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.53 STD DEV: 2.32
Chlamydia trachomatis D/UW-3/CX, complete genome - 1..1042519
895 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
560	 39.92	0	617505..618461	+	318	15605276	-	CT547	-	hypothetical protein
561	 40.51	0	618486..619070	+	194	15605277	-	CT548	-	hypothetical protein
562	 42.18	0	619057..619497	+	146	15605278	rsbW	CT549	-	sigma regulatory factor-histidine kinase
563	 39.20	-1	619504..619929	-	141	15605279	-	CT550	-	hypothetical protein
564	 43.22	0	620037..621068	+	343	15605280	dacC	CT551	-	D-alanyl-D-alanine carboxypeptidase
565	 40.69	0	621483..621890	+	135	15605281	-	CT552	-	hypothetical protein
566	 44.48	+1	622015..622992	+	325	15605282	fmu	CT553	-	RNA methyltransferase
567	 42.07	0	623142..624377	+	411	15605283	brnQ	CT554	-	branched chain amino acid ABC transporter carrier protein
568	 40.28	0	624552..628151	+	1199	15605284	-	CT555	-	SWI/SNF family helicase
569	 48.96	+2	628329..628808	+	159	15605285	-	CT556	-	hypothetical protein
570	 45.49	+1	629017..630414	+	465	15605286	lpdA	CT557	-	dihydrolipoamide dehydrogenase
571	 44.23	+1	630411..631346	+	311	15605287	lipA	CT558	-	lipoyl synthase
572	 44.24	+1	631450..632430	+	326	15605288	yscJ	CT559	-	Yop proteins translocation lipoprotein J
573	 42.17	0	632431..633267	+	278	15605289	-	CT560	-	hypothetical protein
574	 42.41	0	633543..634214	+	223	15605290	yscL	CT561	-	type III secretion system protein
575	 42.78	0	634227..635147	+	306	15605291	yscR	CT562	-	type III secretion system protein
576	 37.54	-1	635159..635443	+	94	15605292	yscS	CT563	-	Yop proteins translocation protein S
577	 43.45	0	635450..636319	+	289	15605293	yyscT	CT564	-	Yop proteins translocation protein T
578	 43.24	0	636397..636840	-	147	15605294	-	CT565	-	hypothetical protein
579	 41.09	0	636931..637923	-	330	15605295	-	CT566	-	hypothetical protein
580	 41.90	0	637929..638453	-	174	15605296	-	CT567	-	hypothetical protein
581	 45.39	+1	638438..638893	-	151	15605297	-	CT568	-	hypothetical protein
582	 40.30	0	638877..639206	-	109	15605298	-	CT569	-	general secretion pathway protein G
583	 42.94	0	639268..640443	-	391	15605299	gspF	CT570	-	general secretion pathway protein F
584	 45.02	+1	640455..641960	-	501	15605300	gspE	CT571	-	general secretion pathway protein E
585	 42.62	0	641944..644226	-	760	15605301	gspD	CT572	-	general secretion pathway protein D
586	 46.83	+2	644227..645456	-	409	15605302	-	CT573	-	hypothetical protein
587	 43.98	+1	645584..646654	-	356	15605303	pepP	CT574	-	aminopeptidase P
588	 44.37	+1	646665..648395	-	576	15605304	mutL	CT575	-	DNA mismatch repair protein
589	 40.63	0	648690..649388	+	232	15605305	lcrH_1	CT576	-	low calcium response protein H
590	 38.33	-1	649405..649764	+	119	15605306	-	CT577	-	hypothetical protein
591	 44.88	+1	649801..651264	+	487	15605307	-	CT578	-	hypothetical protein
592	 49.24	+2	651295..652614	+	439	15605308	-	CT579	-	hypothetical protein
593	 43.29	0	652692..653675	-	327	15605309	-	CT580	-	hypothetical protein
594	 43.13	0	653980..655887	+	635	15605310	thrS	CT581	-	threonyl-tRNA synthetase
595	 42.45	0	656338..657105	+	255	15605311	minD	CT582	-	chromosome partitioning ATPase-CHLTR plasmid protein homolog GP5D
596	 38.89	-1	657110..657901	+	263	15605312	gp6D	CT583	-	virulence plasmid protein pGP6-D-related protein
597	 40.22	0	657867..658418	+	183	15605313	-	CT584	-	hypothetical protein
598	 41.21	0	658617..659657	+	346	15605314	trpS	CT585	-	tryptophanyl-tRNA synthetase
599	 42.75	0	659682..661688	+	668	15605315	uvrB	CT586	-	excinuclease ABC subunit B
600	 42.82	0	661850..663124	+	424	15605316	eno	CT587	-	phosphopyruvate hydratase
601	 40.60	0	663251..665203	+	650	15605317	rbsU	CT588	-	sigma regulatory family protein-PP2C phosphatase
602	 40.08	0	665328..667136	+	602	15605318	-	CT589	-	hypothetical protein
603	 39.93	0	667151..670015	-	954	15605319	-	CT590	-	hypothetical protein
604	 42.35	0	670112..670810	-	232	15605320	sdhB	CT591	-	succinate dehydrogenase iron-sulfur subunit
605	 43.26	0	671047..672768	-	573	15605321	sdhA	CT592	-	succinate dehydrogenase flavoprotein subunit
606	 40.35	0	672765..673334	-	189	15605322	sdhC	CT593	-	succinate dehydrogenase
607	 35.42	-2	673360..673551	-	63	15605323	-	CT593.1	-	hypothetical protein
608	 41.67	0	673773..674564	-	263	15605324	ycfH	CT594	-	PHP superfamily hydrolase
609	 42.66	0	674649..676727	-	692	15605325	dsbD	CT595	-	Thio:disulfide interchange protein
610	 39.48	0	676880..677578	+	232	15605326	exbB	CT596	-	polysaccharide transporter
611	 40.69	0	677575..677982	+	135	15605327	exbD	CT597	-	biopolymer transport protein
612	 42.09	0	677985..678692	+	235	15605328	-	CT598	-	histone H1-I
613	 41.67	0	678692..679987	+	431	15605329	tolB	CT599	-	translocation protein TolB
614	 40.04	0	679984..680550	+	188	15605330	pal	CT600	-	peptidoglycan-associated lipoprotein
615	 40.13	0	680540..681142	+	200	15605331	papQ	CT601	-	invasin repeat-containing phosphatase
616	 41.22	0	681213..681605	+	130	15605332	-	CT602	-	hypothetical protein
617	 42.35	0	681602..682189	-	195	15605333	ahpC	CT603	-	thioredoxin peroxidase
618	 43.51	0	682398..683999	-	533	15605334	groEL_2	CT604	-	HSP-60
619	 42.03	0	684076..685305	-	409	15605335	ybbC	CT605	-	hypothetical protein
620	 41.43	0	685503..686132	+	209	15605336	yggV	CT606	-	putative deoxyribonucleotide triphosphate pyrophosphatase
621	 45.42	+1	686106..686345	-	79	15605337	-	CT606.1	-	hypothetical protein
622	 44.06	+1	686330..687019	-	229	15605338	ung	CT607	-	uracil-DNA glycosylase
623	 40.94	0	687100..689004	+	634	15605339	uvrD	CT608	-	DNA helicase
624	 43.78	0	689008..690318	+	436	15605340	rpoN	CT609	-	RNA polymerase factor sigma-54
625	 38.36	-1	690426..691121	-	231	15605341	-	CT610	-	hypothetical protein
626	 41.94	0	691118..691849	-	243	15605342	-	CT611	-	hypothetical protein
627	 40.83	0	691821..692300	-	159	15605343	folA	CT612	-	dihydrofolate reductase
628	 42.42	0	692297..693649	-	450	15605344	folP	CT613	-	dihydropteroate synthase
629	 41.07	0	693646..694020	-	124	15605345	folX	CT614	-	dihydroneopterin aldolase
630	 42.60	0	694039..695754	-	571	15605346	rpoD	CT615	-	RNA polymerase sigma factor
631	 42.02	0	695903..697192	-	429	15605347	-	CT616	-	hypothetical protein
632	 42.76	0	697641..697937	+	98	15605348	rpsT	CT617	-	30S ribosomal protein S20
633	 45.69	+1	698170..698970	+	266	15605349	-	CT618	-	hypothetical protein
634	 39.14	-1	699026..701659	-	877	15605350	-	CT619	-	hypothetical protein
635	 40.21	0	701774..704290	+	838	15605351	-	CT620	-	hypothetical protein
636	 41.14	0	704354..706852	-	832	15605352	-	CT621	-	hypothetical protein
637	 43.00	0	707080..709023	-	647	15605353	-	CT622	-	hypothetical protein
638	 41.42	0	709131..710429	-	432	15605354	-	CT623	-	hypothetical protein
639	 40.78	0	710672..712282	-	536	15605355	mviN	CT624	-	integral membrane protein
640	 43.83	0	712455..713321	+	288	15605356	nfo	CT625	-	endonuclease IV
641	 40.32	0	713418..714047	-	209	15605357	rpsD	CT626	-	30S ribosomal protein S4
642	 41.16	0	714431..715414	+	327	15605358	yceA	CT627	-	hypothetical protein
643	 41.55	0	715486..716361	-	291	15605359	ispA	CT628	-	dimethylallyltransferase
644	 39.48	0	716417..717034	-	205	15605360	glmU	CT629	-	glucosamine-1-phosphate acetyltransferase
645	 35.53	-2	717087..717770	-	227	15605361	cpxR	CT630	-	HTH transcriptional regulatory protein and receiver domain
646	 34.90	-2	717949..718203	+	84	15605362	-	CT631	-	hypothetical protein
647	 41.89	0	718384..719973	-	529	15605363	-	CT632	-	hypothetical protein
648	 40.51	0	720271..721287	+	338	15605364	hemB	CT633	-	delta-aminolevulinic acid dehydratase
649	 40.41	0	721313..722710	-	465	15605365	-	CT634	-	Na(+)-translocating NADH-quinone reductase subunit A
650	 35.40	-2	722732..723166	-	144	15605366	-	CT635	-	hypothetical protein
651	 38.59	-1	723280..725427	+	715	15605367	greA	CT636	-	fused transcript cleavage factor/uncharacterized domain-containing protein
652	 40.98	0	725615..726817	+	400	15605368	tyrB	CT637	-	aromatic amino acid aminotransferase
653	 42.19	0	726792..727559	+	255	15605369	-	CT638	-	hypothetical protein
654	 40.00	0	727592..727801	+	69	15605370	-	CT638.1	-	hypothetical protein
655	 40.08	0	727817..730897	-	1026	15605371	recB	CT639	-	exodeoxyribonuclease V beta chain
656	 39.57	0	730899..733913	-	1004	15605372	recC	CT640	-	exodeoxyribonuclease V gamma chain
657	 39.23	0	733926..735605	+	559	15605373	ygeD	CT641	-	efflux protein
658	 39.34	0	735625..736440	-	271	15605374	-	CT642	-	hypothetical protein
659	 41.49	0	737335..739908	+	857	15605375	topA	CT643	-	fused DNA topoisomerase I/SWI domain-containing protein
41.53	MEAN

2.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.