IslandPathversion 1.0

IslandPath Analysis: Chlamydia trachomatis D/UW-3/CX



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.53 STD DEV: 2.32
Chlamydia trachomatis D/UW-3/CX, complete genome - 1..1042519
895 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
512	 39.60	0	578763..579464	+	233	15605228	lplA_2	CT499	-	lipoate-protein ligase A
513	 40.38	0	579521..579946	-	141	15605229	ndk	CT500	-	nucleoside diphosphate kinase
514	 39.64	0	580106..580708	-	200	15605230	ruvA	CT501	-	Holliday junction DNA helicase motor protein
515	 40.55	0	580728..581240	-	170	15605231	ruvC	CT502	-	Holliday junction resolvase
516	 38.20	-1	581348..581902	-	184	15605232	-	CT503	-	hypothetical protein
517	 41.18	0	582189..583055	-	288	15605233	-	CT504	-	hypothetical protein
518	 41.39	0	583066..584070	-	334	15605234	gapA	CT505	-	glyceraldehyde-3-phosphate dehydrogenase
519	 38.50	-1	584114..584539	-	141	15605235	rplQ	CT506	-	50S ribosomal protein L17
520	 40.83	0	584548..585681	-	377	15605236	rpoA	CT507	-	DNA-directed RNA polymerase subunit alpha
521	 43.61	0	585702..586100	-	132	15605237	rs11	CT508	-	30S ribosomal protein S11
522	 40.65	0	586122..586490	-	122	15605238	rpsM	CT509	-	30S ribosomal protein S13
523	 41.78	0	586546..587919	-	457	15605239	secY	CT510	-	preprotein translocase subunit SecY
524	 41.38	0	587942..588376	-	144	15605240	rplO	CT511	-	50S ribosomal protein L15
525	 42.37	0	588369..588866	-	165	15605241	rpsE	CT512	-	30S ribosomal protein S5
526	 38.44	-1	588881..589252	-	123	15605242	rplR	CT513	-	50S ribosomal protein L18
527	 42.75	0	589274..589825	-	183	15605243	rplF	CT514	-	50S ribosomal protein L6
528	 41.04	0	589853..590254	-	133	15605244	rpsH	CT515	-	30S ribosomal protein S8
529	 40.15	0	590272..590814	-	180	15605245	rplE	CT516	-	50S ribosomal protein L5
530	 39.58	0	590816..591151	-	111	15605246	rplX	CT517	-	50S ribosomal protein L24
531	 42.55	0	591164..591532	-	122	15605247	rplN	CT518	-	50S ribosomal protein L14
532	 42.86	0	591549..591800	-	83	15605248	rpsQ	CT519	-	30S ribosomal protein S17
533	 37.44	-1	591793..592011	-	72	15605249	rpmC	CT520	-	50S ribosomal protein L29
534	 43.41	0	592013..592429	-	138	15605250	rplP	CT521	-	50S ribosomal protein L16
535	 43.41	0	592462..593136	-	224	15605251	rpsC	CT522	-	30S ribosomal protein S3
536	 45.24	+1	593146..593481	-	111	15605252	rplV	CT523	-	50S ribosomal protein L22
537	 40.82	0	593500..593766	-	88	15605253	rpsS	CT524	-	30S ribosomal protein S19
538	 43.98	+1	593772..594626	-	284	15605254	rplB	CT525	-	50S ribosomal protein L2
539	 40.48	0	594650..594985	-	111	15605255	rplW	CT526	-	50S ribosomal protein L23
540	 42.15	0	595001..595669	-	222	15605256	rplD	CT527	-	50S ribosomal protein L4
541	 43.99	+1	595678..596343	-	221	15605257	rplC	CT528	-	50S ribosomal protein L3
542	 48.49	+2	596778..597674	-	298	15605258	-	CT529	-	hypothetical protein
543	 46.37	+2	597840..598790	-	316	15605259	fmt	CT530	-	methionyl-tRNA formyltransferase
544	 44.96	+1	598780..599622	-	280	15605260	lpxA	CT531	-	UDP-N-acetylglucosamine acyltransferase
545	 40.48	0	599634..600095	-	153	15605261	fabZ	CT532	-	(3R)-hydroxymyristoyl-ACP dehydratase
546	 45.18	+1	600092..600952	-	286	15605262	lpxC	CT533	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
547	 42.97	0	601053..602681	-	542	15605263	lnt	CT534	-	apolipoprotein N-acyltransferase
548	 41.20	0	602745..603227	-	160	15605264	yciA	CT535	-	acyl-CoA hydrolase
549	 38.38	-1	603363..604115	-	250	15605265	dnaQ_2	CT536	-	DNA polymerase III subunit epsilon
550	 44.94	+1	604119..604592	-	157	15605266	yjeE	CT537	-	ATPase or kinase
551	 39.47	0	604571..605287	-	238	15605267	-	CT538	-	hypothetical protein
552	 43.37	0	606009..606317	+	102	15605268	trxA	CT539	-	thioredoxin
553	 41.23	0	606367..606822	-	151	15605269	yibK	CT540	-	rRNA methylase
554	 39.48	0	606838..607569	-	243	15605270	mip	CT541	-	peptidyl-prolyl cis-trans isomerase
555	 41.74	0	607707..609455	-	582	15605271	aspS	CT542	-	aspartyl-tRNA synthetase
556	 41.65	0	609436..610722	-	428	15605272	hisS	CT543	-	histidyl-tRNA synthetase
557	 43.18	0	611158..612528	+	456	15605273	uhpC	CT544	-	hexosphosphate transport
558	 41.46	0	612542..616255	+	1237	15605274	dnaE	CT545	-	DNA polymerase III subunit alpha
559	 38.74	-1	616484..617353	-	289	15605275	-	CT546	-	hypothetical protein
560	 39.92	0	617505..618461	+	318	15605276	-	CT547	-	hypothetical protein
561	 40.51	0	618486..619070	+	194	15605277	-	CT548	-	hypothetical protein
562	 42.18	0	619057..619497	+	146	15605278	rsbW	CT549	-	sigma regulatory factor-histidine kinase
563	 39.20	-1	619504..619929	-	141	15605279	-	CT550	-	hypothetical protein
564	 43.22	0	620037..621068	+	343	15605280	dacC	CT551	-	D-alanyl-D-alanine carboxypeptidase
565	 40.69	0	621483..621890	+	135	15605281	-	CT552	-	hypothetical protein
566	 44.48	+1	622015..622992	+	325	15605282	fmu	CT553	-	RNA methyltransferase
567	 42.07	0	623142..624377	+	411	15605283	brnQ	CT554	-	branched chain amino acid ABC transporter carrier protein
568	 40.28	0	624552..628151	+	1199	15605284	-	CT555	-	SWI/SNF family helicase
569	 48.96	+2	628329..628808	+	159	15605285	-	CT556	-	hypothetical protein
570	 45.49	+1	629017..630414	+	465	15605286	lpdA	CT557	-	dihydrolipoamide dehydrogenase
571	 44.23	+1	630411..631346	+	311	15605287	lipA	CT558	-	lipoyl synthase
572	 44.24	+1	631450..632430	+	326	15605288	yscJ	CT559	-	Yop proteins translocation lipoprotein J
573	 42.17	0	632431..633267	+	278	15605289	-	CT560	-	hypothetical protein
574	 42.41	0	633543..634214	+	223	15605290	yscL	CT561	-	type III secretion system protein
575	 42.78	0	634227..635147	+	306	15605291	yscR	CT562	-	type III secretion system protein
576	 37.54	-1	635159..635443	+	94	15605292	yscS	CT563	-	Yop proteins translocation protein S
577	 43.45	0	635450..636319	+	289	15605293	yyscT	CT564	-	Yop proteins translocation protein T
578	 43.24	0	636397..636840	-	147	15605294	-	CT565	-	hypothetical protein
579	 41.09	0	636931..637923	-	330	15605295	-	CT566	-	hypothetical protein
580	 41.90	0	637929..638453	-	174	15605296	-	CT567	-	hypothetical protein
581	 45.39	+1	638438..638893	-	151	15605297	-	CT568	-	hypothetical protein
582	 40.30	0	638877..639206	-	109	15605298	-	CT569	-	general secretion pathway protein G
583	 42.94	0	639268..640443	-	391	15605299	gspF	CT570	-	general secretion pathway protein F
584	 45.02	+1	640455..641960	-	501	15605300	gspE	CT571	-	general secretion pathway protein E
585	 42.62	0	641944..644226	-	760	15605301	gspD	CT572	-	general secretion pathway protein D
586	 46.83	+2	644227..645456	-	409	15605302	-	CT573	-	hypothetical protein
587	 43.98	+1	645584..646654	-	356	15605303	pepP	CT574	-	aminopeptidase P
588	 44.37	+1	646665..648395	-	576	15605304	mutL	CT575	-	DNA mismatch repair protein
589	 40.63	0	648690..649388	+	232	15605305	lcrH_1	CT576	-	low calcium response protein H
590	 38.33	-1	649405..649764	+	119	15605306	-	CT577	-	hypothetical protein
591	 44.88	+1	649801..651264	+	487	15605307	-	CT578	-	hypothetical protein
592	 49.24	+2	651295..652614	+	439	15605308	-	CT579	-	hypothetical protein
593	 43.29	0	652692..653675	-	327	15605309	-	CT580	-	hypothetical protein
594	 43.13	0	653980..655887	+	635	15605310	thrS	CT581	-	threonyl-tRNA synthetase
595	 42.45	0	656338..657105	+	255	15605311	minD	CT582	-	chromosome partitioning ATPase-CHLTR plasmid protein homolog GP5D
596	 38.89	-1	657110..657901	+	263	15605312	gp6D	CT583	-	virulence plasmid protein pGP6-D-related protein
597	 40.22	0	657867..658418	+	183	15605313	-	CT584	-	hypothetical protein
598	 41.21	0	658617..659657	+	346	15605314	trpS	CT585	-	tryptophanyl-tRNA synthetase
599	 42.75	0	659682..661688	+	668	15605315	uvrB	CT586	-	excinuclease ABC subunit B
600	 42.82	0	661850..663124	+	424	15605316	eno	CT587	-	phosphopyruvate hydratase
601	 40.60	0	663251..665203	+	650	15605317	rbsU	CT588	-	sigma regulatory family protein-PP2C phosphatase
602	 40.08	0	665328..667136	+	602	15605318	-	CT589	-	hypothetical protein
603	 39.93	0	667151..670015	-	954	15605319	-	CT590	-	hypothetical protein
604	 42.35	0	670112..670810	-	232	15605320	sdhB	CT591	-	succinate dehydrogenase iron-sulfur subunit
605	 43.26	0	671047..672768	-	573	15605321	sdhA	CT592	-	succinate dehydrogenase flavoprotein subunit
606	 40.35	0	672765..673334	-	189	15605322	sdhC	CT593	-	succinate dehydrogenase
607	 35.42	-2	673360..673551	-	63	15605323	-	CT593.1	-	hypothetical protein
608	 41.67	0	673773..674564	-	263	15605324	ycfH	CT594	-	PHP superfamily hydrolase
609	 42.66	0	674649..676727	-	692	15605325	dsbD	CT595	-	Thio:disulfide interchange protein
610	 39.48	0	676880..677578	+	232	15605326	exbB	CT596	-	polysaccharide transporter
611	 40.69	0	677575..677982	+	135	15605327	exbD	CT597	-	biopolymer transport protein
41.53	MEAN

2.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.