IslandPathversion 1.0

IslandPath Analysis: Chlamydia trachomatis D/UW-3/CX



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.53 STD DEV: 2.32
Chlamydia trachomatis D/UW-3/CX, complete genome - 1..1042519
895 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
469	 40.08	0	534878..535381	-	167	15605185	YhhY	CT458	-	ribosomal-protein-alanine acetyltransferase
470	 40.61	0	535378..536485	-	369	15605186	prfB	CT459	-	peptide chain release factor 2
471	 37.55	-1	536805..537065	+	86	15605187	-	CT460	-	SWIB (YM74) complex protein
472	 41.01	0	537123..538112	+	329	15605188	yaeI	CT461	-	phosphohydrolase
473	 45.15	+1	538102..538761	+	219	15605189	ispD	CT462	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
474	 42.66	0	538770..539573	+	267	15605190	truA	CT463	-	tRNA pseudouridine synthase A
475	 41.19	0	539525..540199	-	224	15605191	-	CT464	-	hydrolase, haloacid dehalogenase-like family
476	 42.99	0	540292..540933	+	213	15605192	-	CT465	-	hypothetical protein
477	 35.15	-2	541227..541556	+	109	15605193	-	CT466	-	hypothetical protein
478	 41.83	0	541534..542592	+	352	15605194	atoS	CT467	-	2-component regulatory system-sensor histidine kinase
479	 41.52	0	542635..543795	+	386	15605195	atoC	CT468	-	2-component regulatory system-ATPase
480	 43.76	0	544022..544558	+	178	15605196	-	CT469	-	hypothetical protein
481	 40.57	0	544528..545259	+	243	15605197	recO	CT470	-	DNA repair protein RecO
482	 40.46	0	545256..545858	-	200	15605198	-	CT471	-	hypothetical protein
483	 42.01	0	546322..547116	+	264	15605199	-	CT472	-	hypothetical protein
484	 49.52	+2	547122..547436	+	104	15605200	-	CT473	-	hypothetical protein
485	 41.29	0	547375..548304	-	309	15605201	-	CT474	-	hypothetical protein
486	 43.07	0	548392..550764	+	790	15605202	pheT	CT475	-	phenylalanyl-tRNA synthetase subunit beta
487	 42.86	0	550761..551726	+	321	15605203	-	CT476	-	hypothetical protein
488	 47.17	+2	551745..552257	+	170	15605204	ada	CT477	-	methylated-DNA protein - cysteine methyltransferase
489	 41.39	0	552254..553990	-	578	15605205	oppC_2	CT478	-	oligopeptide permease
490	 40.70	0	553992..555470	-	492	15605206	oppB_2	CT479	-	oligopeptide permease
491	 41.75	0	555452..557542	-	696	15605207	oppA_4	CT480	-	oligopeptide binding lipoprotein
492	 40.00	0	557793..557957	-	54	15605208	-	CT480.1	-	hypothetical protein
493	 40.03	0	558150..558881	-	243	15605209	-	CT481	-	hypothetical protein
494	 40.21	0	559043..559696	-	217	15605210	-	CT482	-	hypothetical protein
495	 48.63	+2	560164..560529	+	121	15605211	-	CT483	-	hypothetical protein
496	 38.64	-1	560508..561506	-	332	15605212	-	CT484	-	hypothetical protein
497	 42.01	0	561663..562607	-	314	15605213	hemH	CT485	-	ferrochelatase
498	 39.95	0	562629..563414	-	261	15605214	fliY	CT486	-	glutamine-binding protein
499	 40.49	0	563460..564032	-	190	15605215	yhhF	CT487	-	methyltransferase
500	 44.63	+1	564029..564763	-	244	15605216	-	CT488	-	hypothetical protein
501	 40.27	0	564852..566177	-	441	15605217	glgC	CT489	-	glucose-1-phosphate adenylyltransferase
502	 40.08	0	566370..566621	+	83	15605218	-	CT490	-	hypothetical protein
503	 44.09	+1	566631..568025	-	464	15605219	rho	CT491	-	transcription termination factor Rho
504	 38.26	-1	568022..568630	-	202	15605220	coaE	CT492	-	dephospho-CoA kinase
505	 42.02	0	568624..571224	-	866	15605221	polA	CT493	-	DNA polymerase I
506	 42.97	0	571241..572236	-	331	15605222	sohB	CT494	-	protease
507	 44.36	+1	572375..573997	-	540	15605223	-	CT495	-	ADP/ATP translocase
508	 41.42	0	574209..574715	-	168	15605224	pgsA_1	CT496	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
509	 44.00	+1	575111..575260	-	49	15605225	-	CT496.1	-	hypothetical protein
510	 41.51	0	575229..576647	+	472	15605226	dnaB	CT497	-	replicative DNA helicase
511	 42.88	0	576941..578773	+	610	15605227	gidA	CT498	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
512	 39.60	0	578763..579464	+	233	15605228	lplA_2	CT499	-	lipoate-protein ligase A
513	 40.38	0	579521..579946	-	141	15605229	ndk	CT500	-	nucleoside diphosphate kinase
514	 39.64	0	580106..580708	-	200	15605230	ruvA	CT501	-	Holliday junction DNA helicase motor protein
515	 40.55	0	580728..581240	-	170	15605231	ruvC	CT502	-	Holliday junction resolvase
516	 38.20	-1	581348..581902	-	184	15605232	-	CT503	-	hypothetical protein
517	 41.18	0	582189..583055	-	288	15605233	-	CT504	-	hypothetical protein
518	 41.39	0	583066..584070	-	334	15605234	gapA	CT505	-	glyceraldehyde-3-phosphate dehydrogenase
519	 38.50	-1	584114..584539	-	141	15605235	rplQ	CT506	-	50S ribosomal protein L17
520	 40.83	0	584548..585681	-	377	15605236	rpoA	CT507	-	DNA-directed RNA polymerase subunit alpha
521	 43.61	0	585702..586100	-	132	15605237	rs11	CT508	-	30S ribosomal protein S11
522	 40.65	0	586122..586490	-	122	15605238	rpsM	CT509	-	30S ribosomal protein S13
523	 41.78	0	586546..587919	-	457	15605239	secY	CT510	-	preprotein translocase subunit SecY
524	 41.38	0	587942..588376	-	144	15605240	rplO	CT511	-	50S ribosomal protein L15
525	 42.37	0	588369..588866	-	165	15605241	rpsE	CT512	-	30S ribosomal protein S5
526	 38.44	-1	588881..589252	-	123	15605242	rplR	CT513	-	50S ribosomal protein L18
527	 42.75	0	589274..589825	-	183	15605243	rplF	CT514	-	50S ribosomal protein L6
528	 41.04	0	589853..590254	-	133	15605244	rpsH	CT515	-	30S ribosomal protein S8
529	 40.15	0	590272..590814	-	180	15605245	rplE	CT516	-	50S ribosomal protein L5
530	 39.58	0	590816..591151	-	111	15605246	rplX	CT517	-	50S ribosomal protein L24
531	 42.55	0	591164..591532	-	122	15605247	rplN	CT518	-	50S ribosomal protein L14
532	 42.86	0	591549..591800	-	83	15605248	rpsQ	CT519	-	30S ribosomal protein S17
533	 37.44	-1	591793..592011	-	72	15605249	rpmC	CT520	-	50S ribosomal protein L29
534	 43.41	0	592013..592429	-	138	15605250	rplP	CT521	-	50S ribosomal protein L16
535	 43.41	0	592462..593136	-	224	15605251	rpsC	CT522	-	30S ribosomal protein S3
536	 45.24	+1	593146..593481	-	111	15605252	rplV	CT523	-	50S ribosomal protein L22
537	 40.82	0	593500..593766	-	88	15605253	rpsS	CT524	-	30S ribosomal protein S19
538	 43.98	+1	593772..594626	-	284	15605254	rplB	CT525	-	50S ribosomal protein L2
539	 40.48	0	594650..594985	-	111	15605255	rplW	CT526	-	50S ribosomal protein L23
540	 42.15	0	595001..595669	-	222	15605256	rplD	CT527	-	50S ribosomal protein L4
541	 43.99	+1	595678..596343	-	221	15605257	rplC	CT528	-	50S ribosomal protein L3
542	 48.49	+2	596778..597674	-	298	15605258	-	CT529	-	hypothetical protein
543	 46.37	+2	597840..598790	-	316	15605259	fmt	CT530	-	methionyl-tRNA formyltransferase
544	 44.96	+1	598780..599622	-	280	15605260	lpxA	CT531	-	UDP-N-acetylglucosamine acyltransferase
545	 40.48	0	599634..600095	-	153	15605261	fabZ	CT532	-	(3R)-hydroxymyristoyl-ACP dehydratase
546	 45.18	+1	600092..600952	-	286	15605262	lpxC	CT533	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
547	 42.97	0	601053..602681	-	542	15605263	lnt	CT534	-	apolipoprotein N-acyltransferase
548	 41.20	0	602745..603227	-	160	15605264	yciA	CT535	-	acyl-CoA hydrolase
549	 38.38	-1	603363..604115	-	250	15605265	dnaQ_2	CT536	-	DNA polymerase III subunit epsilon
550	 44.94	+1	604119..604592	-	157	15605266	yjeE	CT537	-	ATPase or kinase
551	 39.47	0	604571..605287	-	238	15605267	-	CT538	-	hypothetical protein
552	 43.37	0	606009..606317	+	102	15605268	trxA	CT539	-	thioredoxin
553	 41.23	0	606367..606822	-	151	15605269	yibK	CT540	-	rRNA methylase
554	 39.48	0	606838..607569	-	243	15605270	mip	CT541	-	peptidyl-prolyl cis-trans isomerase
555	 41.74	0	607707..609455	-	582	15605271	aspS	CT542	-	aspartyl-tRNA synthetase
556	 41.65	0	609436..610722	-	428	15605272	hisS	CT543	-	histidyl-tRNA synthetase
557	 43.18	0	611158..612528	+	456	15605273	uhpC	CT544	-	hexosphosphate transport
558	 41.46	0	612542..616255	+	1237	15605274	dnaE	CT545	-	DNA polymerase III subunit alpha
559	 38.74	-1	616484..617353	-	289	15605275	-	CT546	-	hypothetical protein
560	 39.92	0	617505..618461	+	318	15605276	-	CT547	-	hypothetical protein
561	 40.51	0	618486..619070	+	194	15605277	-	CT548	-	hypothetical protein
562	 42.18	0	619057..619497	+	146	15605278	rsbW	CT549	-	sigma regulatory factor-histidine kinase
563	 39.20	-1	619504..619929	-	141	15605279	-	CT550	-	hypothetical protein
564	 43.22	0	620037..621068	+	343	15605280	dacC	CT551	-	D-alanyl-D-alanine carboxypeptidase
565	 40.69	0	621483..621890	+	135	15605281	-	CT552	-	hypothetical protein
566	 44.48	+1	622015..622992	+	325	15605282	fmu	CT553	-	RNA methyltransferase
567	 42.07	0	623142..624377	+	411	15605283	brnQ	CT554	-	branched chain amino acid ABC transporter carrier protein
568	 40.28	0	624552..628151	+	1199	15605284	-	CT555	-	SWI/SNF family helicase
41.53	MEAN

2.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.