IslandPathversion 1.0

IslandPath Analysis: Chlamydia trachomatis D/UW-3/CX



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.53 STD DEV: 2.32
Chlamydia trachomatis D/UW-3/CX, complete genome - 1..1042519
895 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
437	 40.88	0	497042..497863	+	273	15605154	-	CT427	-	hypothetical protein
438	 43.33	0	497799..498488	+	229	15605155	ubiE	CT428	-	ubiquinone/menaquinone biosynthesis methyltransferase
439	 39.90	0	498514..499503	-	329	15605156	-	CT429	-	hypothetical protein
440	 41.18	0	499564..500391	-	275	15605157	dapF	CT430	-	diaminopimelate epimerase
441	 42.31	0	500360..500938	-	192	15605158	clpP_1	CT431	-	ATP-dependent Clp protease proteolytic subunit
442	 42.90	0	500950..502443	-	497	15605159	glyA	CT432	-	serine hydroxymethyltransferase
443	 42.26	0	502807..503478	+	223	15605160	hemD	CT433	-	uroporphyrinogen-III synthase
444	 42.46	0	503581..504117	+	178	15605161	ispF	CT434	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
445	 40.36	0	504114..505166	-	350	15605162	cysJ	CT435	-	sulfite reductase
446	 39.62	0	505183..505500	-	105	15605163	rpsJ	CT436	-	30S ribosomal protein S10
447	 43.26	0	505508..507592	-	694	15605164	fusA	CT437	-	elongation factor G
448	 43.46	0	507634..508107	-	157	15605165	rs7	CT438	-	30S ribosomal protein S7
449	 45.70	+1	508157..508528	-	123	15605611	rpsL	CT439m	-	30S ribosomal protein S12
450	 37.76	-1	508788..509126	+	112	15605166	-	CT440	-	hypothetical protein
451	 40.88	0	509284..511218	+	644	15605167	tsp	CT441	-	tail-specific protease
452	 40.62	0	511340..511792	-	150	15605168	crpA	CT442	-	hypothetical protein
453	 41.88	0	511971..513632	-	553	15605169	omcB	CT443	-	60kD cysteine-rich outer membrane protein
454	 44.57	+1	513779..514045	-	88	15605170	omcA	CT444	-	9kDa-cysteine-rich lipoprotein
455	 42.67	0	514382..514606	+	74	15605171	-	CT444.1	-	hypothetical protein
456	 43.26	0	514603..516123	-	506	15605172	gltX	CT445	-	glutamyl-tRNA synthetase
457	 43.30	0	516395..516946	-	183	15605173	euo	CT446	-	hypothetical protein
458	 41.03	0	517351..519105	-	584	15605174	recJ	CT447	-	ssDNA exonuclease
459	 41.28	0	519223..523425	-	1400	15605175	secD/secF	CT448	-	bifunctional preprotein translocase subunit SecD/SecF
460	 41.14	0	523845..524177	-	110	15605176	-	CT449	-	hypothetical protein
461	 42.65	0	524640..525401	+	253	15605177	yaeS	CT450	-	YaeS family protein
462	 42.16	0	525407..526324	+	305	15605178	cdsA	CT451	-	phosphatidate cytidylyltransferase
463	 44.39	+1	526321..526971	+	216	15605179	cmk	CT452	-	cytidylate kinase
464	 44.24	+1	526968..527618	+	216	15605180	plsC	CT453	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
465	 42.61	0	527633..529324	+	563	15605181	argS	CT454	-	arginyl-tRNA synthetase
466	 44.04	+1	529362..530696	-	444	15605182	murA	CT455	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
467	 45.86	+1	530908..533925	+	1005	15605183	-	CT456	-	hypothetical protein
468	 41.98	0	533977..534693	-	238	15605184	yebC	CT457	-	hypothetical protein
469	 40.08	0	534878..535381	-	167	15605185	YhhY	CT458	-	ribosomal-protein-alanine acetyltransferase
470	 40.61	0	535378..536485	-	369	15605186	prfB	CT459	-	peptide chain release factor 2
471	 37.55	-1	536805..537065	+	86	15605187	-	CT460	-	SWIB (YM74) complex protein
472	 41.01	0	537123..538112	+	329	15605188	yaeI	CT461	-	phosphohydrolase
473	 45.15	+1	538102..538761	+	219	15605189	ispD	CT462	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
474	 42.66	0	538770..539573	+	267	15605190	truA	CT463	-	tRNA pseudouridine synthase A
475	 41.19	0	539525..540199	-	224	15605191	-	CT464	-	hydrolase, haloacid dehalogenase-like family
476	 42.99	0	540292..540933	+	213	15605192	-	CT465	-	hypothetical protein
477	 35.15	-2	541227..541556	+	109	15605193	-	CT466	-	hypothetical protein
478	 41.83	0	541534..542592	+	352	15605194	atoS	CT467	-	2-component regulatory system-sensor histidine kinase
479	 41.52	0	542635..543795	+	386	15605195	atoC	CT468	-	2-component regulatory system-ATPase
480	 43.76	0	544022..544558	+	178	15605196	-	CT469	-	hypothetical protein
481	 40.57	0	544528..545259	+	243	15605197	recO	CT470	-	DNA repair protein RecO
482	 40.46	0	545256..545858	-	200	15605198	-	CT471	-	hypothetical protein
483	 42.01	0	546322..547116	+	264	15605199	-	CT472	-	hypothetical protein
484	 49.52	+2	547122..547436	+	104	15605200	-	CT473	-	hypothetical protein
485	 41.29	0	547375..548304	-	309	15605201	-	CT474	-	hypothetical protein
486	 43.07	0	548392..550764	+	790	15605202	pheT	CT475	-	phenylalanyl-tRNA synthetase subunit beta
487	 42.86	0	550761..551726	+	321	15605203	-	CT476	-	hypothetical protein
488	 47.17	+2	551745..552257	+	170	15605204	ada	CT477	-	methylated-DNA protein - cysteine methyltransferase
489	 41.39	0	552254..553990	-	578	15605205	oppC_2	CT478	-	oligopeptide permease
490	 40.70	0	553992..555470	-	492	15605206	oppB_2	CT479	-	oligopeptide permease
491	 41.75	0	555452..557542	-	696	15605207	oppA_4	CT480	-	oligopeptide binding lipoprotein
492	 40.00	0	557793..557957	-	54	15605208	-	CT480.1	-	hypothetical protein
493	 40.03	0	558150..558881	-	243	15605209	-	CT481	-	hypothetical protein
494	 40.21	0	559043..559696	-	217	15605210	-	CT482	-	hypothetical protein
495	 48.63	+2	560164..560529	+	121	15605211	-	CT483	-	hypothetical protein
496	 38.64	-1	560508..561506	-	332	15605212	-	CT484	-	hypothetical protein
497	 42.01	0	561663..562607	-	314	15605213	hemH	CT485	-	ferrochelatase
498	 39.95	0	562629..563414	-	261	15605214	fliY	CT486	-	glutamine-binding protein
499	 40.49	0	563460..564032	-	190	15605215	yhhF	CT487	-	methyltransferase
500	 44.63	+1	564029..564763	-	244	15605216	-	CT488	-	hypothetical protein
501	 40.27	0	564852..566177	-	441	15605217	glgC	CT489	-	glucose-1-phosphate adenylyltransferase
502	 40.08	0	566370..566621	+	83	15605218	-	CT490	-	hypothetical protein
503	 44.09	+1	566631..568025	-	464	15605219	rho	CT491	-	transcription termination factor Rho
504	 38.26	-1	568022..568630	-	202	15605220	coaE	CT492	-	dephospho-CoA kinase
505	 42.02	0	568624..571224	-	866	15605221	polA	CT493	-	DNA polymerase I
506	 42.97	0	571241..572236	-	331	15605222	sohB	CT494	-	protease
507	 44.36	+1	572375..573997	-	540	15605223	-	CT495	-	ADP/ATP translocase
508	 41.42	0	574209..574715	-	168	15605224	pgsA_1	CT496	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
509	 44.00	+1	575111..575260	-	49	15605225	-	CT496.1	-	hypothetical protein
510	 41.51	0	575229..576647	+	472	15605226	dnaB	CT497	-	replicative DNA helicase
511	 42.88	0	576941..578773	+	610	15605227	gidA	CT498	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
512	 39.60	0	578763..579464	+	233	15605228	lplA_2	CT499	-	lipoate-protein ligase A
513	 40.38	0	579521..579946	-	141	15605229	ndk	CT500	-	nucleoside diphosphate kinase
514	 39.64	0	580106..580708	-	200	15605230	ruvA	CT501	-	Holliday junction DNA helicase motor protein
515	 40.55	0	580728..581240	-	170	15605231	ruvC	CT502	-	Holliday junction resolvase
516	 38.20	-1	581348..581902	-	184	15605232	-	CT503	-	hypothetical protein
517	 41.18	0	582189..583055	-	288	15605233	-	CT504	-	hypothetical protein
518	 41.39	0	583066..584070	-	334	15605234	gapA	CT505	-	glyceraldehyde-3-phosphate dehydrogenase
519	 38.50	-1	584114..584539	-	141	15605235	rplQ	CT506	-	50S ribosomal protein L17
520	 40.83	0	584548..585681	-	377	15605236	rpoA	CT507	-	DNA-directed RNA polymerase subunit alpha
521	 43.61	0	585702..586100	-	132	15605237	rs11	CT508	-	30S ribosomal protein S11
522	 40.65	0	586122..586490	-	122	15605238	rpsM	CT509	-	30S ribosomal protein S13
523	 41.78	0	586546..587919	-	457	15605239	secY	CT510	-	preprotein translocase subunit SecY
524	 41.38	0	587942..588376	-	144	15605240	rplO	CT511	-	50S ribosomal protein L15
525	 42.37	0	588369..588866	-	165	15605241	rpsE	CT512	-	30S ribosomal protein S5
526	 38.44	-1	588881..589252	-	123	15605242	rplR	CT513	-	50S ribosomal protein L18
527	 42.75	0	589274..589825	-	183	15605243	rplF	CT514	-	50S ribosomal protein L6
528	 41.04	0	589853..590254	-	133	15605244	rpsH	CT515	-	30S ribosomal protein S8
529	 40.15	0	590272..590814	-	180	15605245	rplE	CT516	-	50S ribosomal protein L5
530	 39.58	0	590816..591151	-	111	15605246	rplX	CT517	-	50S ribosomal protein L24
531	 42.55	0	591164..591532	-	122	15605247	rplN	CT518	-	50S ribosomal protein L14
532	 42.86	0	591549..591800	-	83	15605248	rpsQ	CT519	-	30S ribosomal protein S17
533	 37.44	-1	591793..592011	-	72	15605249	rpmC	CT520	-	50S ribosomal protein L29
534	 43.41	0	592013..592429	-	138	15605250	rplP	CT521	-	50S ribosomal protein L16
535	 43.41	0	592462..593136	-	224	15605251	rpsC	CT522	-	30S ribosomal protein S3
536	 45.24	+1	593146..593481	-	111	15605252	rplV	CT523	-	50S ribosomal protein L22
41.53	MEAN

2.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.