IslandPathversion 1.0

IslandPath Analysis: Chlamydia trachomatis D/UW-3/CX



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.53 STD DEV: 2.32
Chlamydia trachomatis D/UW-3/CX, complete genome - 1..1042519
895 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
401	 43.01	0	448027..449772	+	581	15605118	proS	CT393	-	prolyl-tRNA synthetase
402	 41.05	0	449841..451019	+	392	15605119	hrcA	CT394	-	heat-inducible transcription repressor
403	 40.49	0	451016..451588	+	190	15605120	grpE	CT395	-	HSP-70 cofactor
404	 42.71	0	451614..453596	+	660	15605121	dnaK	CT396	-	molecular chaperone DnaK
405	 42.16	0	453889..455973	+	694	15605122	vacB	CT397	-	exoribonuclease II
406	 40.00	0	456229..456993	+	254	15605123	-	CT398	-	hypothetical protein
407	 40.32	0	457416..458402	-	328	15605124	yrbH	CT399	-	GutQ/KpsF family sugar-P isomerase
408	 43.10	0	458434..459600	-	388	15605125	sucB_2	CT400	-	branched-chain alpha-keto acid dehydrogenase subunit E2
409	 42.37	0	459846..461084	-	412	15605126	gltT	CT401	-	glutamate symport
410	 44.21	+1	461081..462340	-	419	15605127	lpxK	CT402	-	tetraacyldisaccharide 4'-kinase
411	 39.38	0	462356..463165	-	269	15605128	yjfH	CT403	-	rRNA methylase
412	 42.51	0	463153..463980	-	275	15605129	-	CT404	-	N6-adenine-specific DNA methylase
413	 42.17	0	463977..464576	-	199	15605130	ribC	CT405	-	riboflavin synthase subunit alpha
414	 38.71	-1	464969..465433	+	154	15605131	-	CT406	-	transcriptional regulator NrdR
415	 38.93	-1	465447..465821	+	124	15605132	dksA	CT407	-	dnaK suppressor protein
416	 41.87	0	465827..466330	+	167	15605133	lspA	CT408	-	lipoprotein signal peptidase
417	 42.22	0	466432..467793	+	453	15605134	-	CT409	-	amino acid permease
418	 39.12	-1	468008..469285	+	425	15605135	pcnB_1	CT410	-	polyA polymerase
419	 40.73	0	469346..471169	+	607	15605136	lpxB	CT411	-	lipid-A-disaccharide synthase
420	 40.68	0	471276..474203	+	975	15605137	pmpA	CT412	-	polymorphic outer membrane protein
421	 42.31	0	474342..479597	+	1751	15605138	pmpB	CT413	-	putative outer membrane protein B
422	 41.80	0	479774..485086	+	1770	15605139	pmpC	CT414	-	putative outer membrane protein C
423	 40.19	0	485639..486469	+	276	15605140	yebL	CT415	-	solute-binding protein
424	 43.60	0	486466..487176	+	236	15605141	-	CT416	-	ABC transporter ATPase
425	 42.06	0	487167..488048	+	293	15605142	-	CT417	-	metal transport protein
426	 43.15	0	487964..488971	-	335	15605143	obgE	CT418	-	GTPase ObgE
427	 45.24	+1	489061..489312	-	83	15605144	rpmA	CT419	-	50S ribosomal protein L27
428	 40.12	0	489343..489666	-	107	15605145	rplU	CT420	-	50S ribosomal protein L21
429	 41.74	0	490216..490917	+	233	15605146	-	CT421	-	hypothetical protein
430	 43.21	0	491102..491263	+	53	15605147	-	CT421.1	-	hypothetical protein
431	 45.06	+1	491280..491441	+	53	15605148	-	CT421.2	-	hypothetical protein
432	 40.12	0	491454..491939	+	161	15605149	-	CT422	-	metalloenzyme
433	 41.17	0	492072..493181	+	369	15605150	-	CT423	-	CBS domain-containing protein
434	 39.32	0	493370..493720	+	116	15605151	rsbV_1	CT424	-	anti-sigma F factor antagonist
435	 41.21	0	493898..495763	+	621	15605152	-	CT425	-	hypothetical protein
436	 41.53	0	495960..497069	+	369	15605153	-	CT426	-	hypothetical protein
437	 40.88	0	497042..497863	+	273	15605154	-	CT427	-	hypothetical protein
438	 43.33	0	497799..498488	+	229	15605155	ubiE	CT428	-	ubiquinone/menaquinone biosynthesis methyltransferase
439	 39.90	0	498514..499503	-	329	15605156	-	CT429	-	hypothetical protein
440	 41.18	0	499564..500391	-	275	15605157	dapF	CT430	-	diaminopimelate epimerase
441	 42.31	0	500360..500938	-	192	15605158	clpP_1	CT431	-	ATP-dependent Clp protease proteolytic subunit
442	 42.90	0	500950..502443	-	497	15605159	glyA	CT432	-	serine hydroxymethyltransferase
443	 42.26	0	502807..503478	+	223	15605160	hemD	CT433	-	uroporphyrinogen-III synthase
444	 42.46	0	503581..504117	+	178	15605161	ispF	CT434	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
445	 40.36	0	504114..505166	-	350	15605162	cysJ	CT435	-	sulfite reductase
446	 39.62	0	505183..505500	-	105	15605163	rpsJ	CT436	-	30S ribosomal protein S10
447	 43.26	0	505508..507592	-	694	15605164	fusA	CT437	-	elongation factor G
448	 43.46	0	507634..508107	-	157	15605165	rs7	CT438	-	30S ribosomal protein S7
449	 45.70	+1	508157..508528	-	123	15605611	rpsL	CT439m	-	30S ribosomal protein S12
450	 37.76	-1	508788..509126	+	112	15605166	-	CT440	-	hypothetical protein
451	 40.88	0	509284..511218	+	644	15605167	tsp	CT441	-	tail-specific protease
452	 40.62	0	511340..511792	-	150	15605168	crpA	CT442	-	hypothetical protein
453	 41.88	0	511971..513632	-	553	15605169	omcB	CT443	-	60kD cysteine-rich outer membrane protein
454	 44.57	+1	513779..514045	-	88	15605170	omcA	CT444	-	9kDa-cysteine-rich lipoprotein
455	 42.67	0	514382..514606	+	74	15605171	-	CT444.1	-	hypothetical protein
456	 43.26	0	514603..516123	-	506	15605172	gltX	CT445	-	glutamyl-tRNA synthetase
457	 43.30	0	516395..516946	-	183	15605173	euo	CT446	-	hypothetical protein
458	 41.03	0	517351..519105	-	584	15605174	recJ	CT447	-	ssDNA exonuclease
459	 41.28	0	519223..523425	-	1400	15605175	secD/secF	CT448	-	bifunctional preprotein translocase subunit SecD/SecF
460	 41.14	0	523845..524177	-	110	15605176	-	CT449	-	hypothetical protein
461	 42.65	0	524640..525401	+	253	15605177	yaeS	CT450	-	YaeS family protein
462	 42.16	0	525407..526324	+	305	15605178	cdsA	CT451	-	phosphatidate cytidylyltransferase
463	 44.39	+1	526321..526971	+	216	15605179	cmk	CT452	-	cytidylate kinase
464	 44.24	+1	526968..527618	+	216	15605180	plsC	CT453	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
465	 42.61	0	527633..529324	+	563	15605181	argS	CT454	-	arginyl-tRNA synthetase
466	 44.04	+1	529362..530696	-	444	15605182	murA	CT455	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
467	 45.86	+1	530908..533925	+	1005	15605183	-	CT456	-	hypothetical protein
468	 41.98	0	533977..534693	-	238	15605184	yebC	CT457	-	hypothetical protein
469	 40.08	0	534878..535381	-	167	15605185	YhhY	CT458	-	ribosomal-protein-alanine acetyltransferase
470	 40.61	0	535378..536485	-	369	15605186	prfB	CT459	-	peptide chain release factor 2
471	 37.55	-1	536805..537065	+	86	15605187	-	CT460	-	SWIB (YM74) complex protein
472	 41.01	0	537123..538112	+	329	15605188	yaeI	CT461	-	phosphohydrolase
473	 45.15	+1	538102..538761	+	219	15605189	ispD	CT462	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
474	 42.66	0	538770..539573	+	267	15605190	truA	CT463	-	tRNA pseudouridine synthase A
475	 41.19	0	539525..540199	-	224	15605191	-	CT464	-	hydrolase, haloacid dehalogenase-like family
476	 42.99	0	540292..540933	+	213	15605192	-	CT465	-	hypothetical protein
477	 35.15	-2	541227..541556	+	109	15605193	-	CT466	-	hypothetical protein
478	 41.83	0	541534..542592	+	352	15605194	atoS	CT467	-	2-component regulatory system-sensor histidine kinase
479	 41.52	0	542635..543795	+	386	15605195	atoC	CT468	-	2-component regulatory system-ATPase
480	 43.76	0	544022..544558	+	178	15605196	-	CT469	-	hypothetical protein
481	 40.57	0	544528..545259	+	243	15605197	recO	CT470	-	DNA repair protein RecO
482	 40.46	0	545256..545858	-	200	15605198	-	CT471	-	hypothetical protein
483	 42.01	0	546322..547116	+	264	15605199	-	CT472	-	hypothetical protein
484	 49.52	+2	547122..547436	+	104	15605200	-	CT473	-	hypothetical protein
485	 41.29	0	547375..548304	-	309	15605201	-	CT474	-	hypothetical protein
486	 43.07	0	548392..550764	+	790	15605202	pheT	CT475	-	phenylalanyl-tRNA synthetase subunit beta
487	 42.86	0	550761..551726	+	321	15605203	-	CT476	-	hypothetical protein
488	 47.17	+2	551745..552257	+	170	15605204	ada	CT477	-	methylated-DNA protein - cysteine methyltransferase
489	 41.39	0	552254..553990	-	578	15605205	oppC_2	CT478	-	oligopeptide permease
490	 40.70	0	553992..555470	-	492	15605206	oppB_2	CT479	-	oligopeptide permease
491	 41.75	0	555452..557542	-	696	15605207	oppA_4	CT480	-	oligopeptide binding lipoprotein
492	 40.00	0	557793..557957	-	54	15605208	-	CT480.1	-	hypothetical protein
493	 40.03	0	558150..558881	-	243	15605209	-	CT481	-	hypothetical protein
494	 40.21	0	559043..559696	-	217	15605210	-	CT482	-	hypothetical protein
495	 48.63	+2	560164..560529	+	121	15605211	-	CT483	-	hypothetical protein
496	 38.64	-1	560508..561506	-	332	15605212	-	CT484	-	hypothetical protein
497	 42.01	0	561663..562607	-	314	15605213	hemH	CT485	-	ferrochelatase
498	 39.95	0	562629..563414	-	261	15605214	fliY	CT486	-	glutamine-binding protein
499	 40.49	0	563460..564032	-	190	15605215	yhhF	CT487	-	methyltransferase
500	 44.63	+1	564029..564763	-	244	15605216	-	CT488	-	hypothetical protein
41.53	MEAN

2.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.