IslandPathversion 1.0

IslandPath Analysis: Chlamydia trachomatis D/UW-3/CX



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.53 STD DEV: 2.32
Chlamydia trachomatis D/UW-3/CX, complete genome - 1..1042519
895 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
356	 39.21	-1	401243..403336	+	697	15605074	-	CT351	-	hypothetical protein
357	 38.19	-1	403410..403718	-	102	15605612	secG	CT351a	-	preprotein translocase subunit SecG
358	 39.54	0	403499..403804	+	101	15605075	-	CT352	-	hypothetical protein
359	 38.28	-1	403874..404419	-	181	15605076	def	CT353	-	peptide deformylase
360	 41.61	0	404694..405527	-	277	15605077	ksgA	CT354	-	dimethyladenosine transferase
361	 43.03	0	405543..406604	-	353	15605078	-	CT355	-	hypothetical protein
362	 40.76	0	406909..409023	-	704	15605079	yyaL	CT356	-	hypothetical protein
363	 38.89	-1	409341..409628	-	95	15605080	-	CT357R	-	hypothetical protein
364	 43.24	0	409480..409812	+	110	15605081	-	CT357	-	hypothetical protein
365	 44.69	+1	409838..410374	+	178	15605082	-	CT358	-	hypothetical protein
366	 40.61	0	410434..411024	-	196	15605083	-	CT359	-	hypothetical protein
367	 38.12	-1	411276..411902	-	208	15605084	-	CT360	-	hypothetical protein
368	 43.21	0	412064..412924	-	286	15605085	dapA	CT361	-	dihydrodipicolinate synthase
369	 41.36	0	412934..414229	-	431	15605086	lysC	CT362	-	aspartate kinase
370	 40.40	0	414222..415226	-	334	15605087	asd	CT363	-	aspartate-semialdehyde dehydrogenase
371	 40.81	0	415236..415997	-	253	15605088	dapB	CT364	-	dihydrodipicolinate reductase
372	 41.67	0	416174..417901	-	575	15605089	-	CT365	-	hypothetical protein
373	 43.99	+1	418071..419393	+	440	15605090	aroA	CT366	-	3-phosphoshikimate 1-carboxyvinyltransferase
374	 41.98	0	419335..419889	+	184	15605091	aroL	CT367	-	shikimate kinase
375	 45.81	+1	419882..420955	+	357	15605092	aroC	CT368	-	chorismate synthase
376	 40.37	0	420952..422073	+	373	15605093	aroB	CT369	-	3-dehydroquinate synthase
377	 42.38	0	422054..423490	+	478	15605094	aroDE	CT370	-	bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein
378	 39.57	0	423532..424317	+	261	15605095	-	CT371	-	hypothetical protein
379	 43.34	0	424459..425787	+	442	15605096	-	CT372	-	hypothetical protein
380	 40.99	0	425856..426443	+	195	15605097	-	CT373	-	hypothetical protein
381	 41.05	0	426459..427910	+	483	15605098	arcD	CT374	-	arginine/ornithine antiporter
382	 46.18	+2	428082..429140	+	352	15605099	-	CT375	-	D-amino acid dehydrogenase
383	 44.44	+1	429182..430162	-	326	15605100	mdhC	CT376	-	malate dehydrogenase
384	 39.01	-1	430353..430493	-	46	15605101	ltuA	CT377	-	late transcription unit A protein
385	 41.32	0	430608..432185	-	525	15605102	pgi	CT378	-	glucose-6-phosphate isomerase
386	 40.03	0	432298..433641	-	447	15605103	hflX	CT379	-	GTP binding protein
387	 40.45	0	433654..434454	-	266	15605104	phnP	CT380	-	metal-dependent hydrolase
388	 41.47	0	434483..435256	-	257	15605105	artJ	CT381	-	arginine binding protein
389	 42.41	0	435325..436161	-	278	15605106	aroG	CT382	-	3-deoxy-7-phosphoheptulonate synthase
390	 33.85	-2	436298..436489	-	63	15605107	-	CT382.1	-	hypothetical protein
391	 44.67	+1	436672..437403	+	243	15605108	-	CT383	-	hypothetical protein
392	 42.28	0	437414..439033	-	539	15605109	-	CT384	-	hypothetical protein
393	 41.07	0	439048..439383	-	111	15605110	ycfF	CT385	-	Hit family hydrolase
394	 42.18	0	439380..440249	-	289	15605111	-	CT386	-	metal dependent hydrolase
395	 43.16	0	440536..442611	+	691	15605112	-	CT387	-	hypothetical protein
396	 38.94	-1	442625..442927	-	100	161723222	-	CT388	-	hypothetical protein
397	 42.30	0	443154..444380	+	408	15605114	-	CT389	-	hypothetical protein
398	 41.86	0	444488..445672	+	394	15605115	aspC	CT390	-	L,L-diaminopimelate aminotransferase
399	 39.98	0	445680..446687	+	335	15605116	-	CT391	-	hypothetical protein
400	 47.09	+2	446693..447826	-	377	15605117	yprS	CT392	-	hypothetical protein
401	 43.01	0	448027..449772	+	581	15605118	proS	CT393	-	prolyl-tRNA synthetase
402	 41.05	0	449841..451019	+	392	15605119	hrcA	CT394	-	heat-inducible transcription repressor
403	 40.49	0	451016..451588	+	190	15605120	grpE	CT395	-	HSP-70 cofactor
404	 42.71	0	451614..453596	+	660	15605121	dnaK	CT396	-	molecular chaperone DnaK
405	 42.16	0	453889..455973	+	694	15605122	vacB	CT397	-	exoribonuclease II
406	 40.00	0	456229..456993	+	254	15605123	-	CT398	-	hypothetical protein
407	 40.32	0	457416..458402	-	328	15605124	yrbH	CT399	-	GutQ/KpsF family sugar-P isomerase
408	 43.10	0	458434..459600	-	388	15605125	sucB_2	CT400	-	branched-chain alpha-keto acid dehydrogenase subunit E2
409	 42.37	0	459846..461084	-	412	15605126	gltT	CT401	-	glutamate symport
410	 44.21	+1	461081..462340	-	419	15605127	lpxK	CT402	-	tetraacyldisaccharide 4'-kinase
411	 39.38	0	462356..463165	-	269	15605128	yjfH	CT403	-	rRNA methylase
412	 42.51	0	463153..463980	-	275	15605129	-	CT404	-	N6-adenine-specific DNA methylase
413	 42.17	0	463977..464576	-	199	15605130	ribC	CT405	-	riboflavin synthase subunit alpha
414	 38.71	-1	464969..465433	+	154	15605131	-	CT406	-	transcriptional regulator NrdR
415	 38.93	-1	465447..465821	+	124	15605132	dksA	CT407	-	dnaK suppressor protein
416	 41.87	0	465827..466330	+	167	15605133	lspA	CT408	-	lipoprotein signal peptidase
417	 42.22	0	466432..467793	+	453	15605134	-	CT409	-	amino acid permease
418	 39.12	-1	468008..469285	+	425	15605135	pcnB_1	CT410	-	polyA polymerase
419	 40.73	0	469346..471169	+	607	15605136	lpxB	CT411	-	lipid-A-disaccharide synthase
420	 40.68	0	471276..474203	+	975	15605137	pmpA	CT412	-	polymorphic outer membrane protein
421	 42.31	0	474342..479597	+	1751	15605138	pmpB	CT413	-	putative outer membrane protein B
422	 41.80	0	479774..485086	+	1770	15605139	pmpC	CT414	-	putative outer membrane protein C
423	 40.19	0	485639..486469	+	276	15605140	yebL	CT415	-	solute-binding protein
424	 43.60	0	486466..487176	+	236	15605141	-	CT416	-	ABC transporter ATPase
425	 42.06	0	487167..488048	+	293	15605142	-	CT417	-	metal transport protein
426	 43.15	0	487964..488971	-	335	15605143	obgE	CT418	-	GTPase ObgE
427	 45.24	+1	489061..489312	-	83	15605144	rpmA	CT419	-	50S ribosomal protein L27
428	 40.12	0	489343..489666	-	107	15605145	rplU	CT420	-	50S ribosomal protein L21
429	 41.74	0	490216..490917	+	233	15605146	-	CT421	-	hypothetical protein
430	 43.21	0	491102..491263	+	53	15605147	-	CT421.1	-	hypothetical protein
431	 45.06	+1	491280..491441	+	53	15605148	-	CT421.2	-	hypothetical protein
432	 40.12	0	491454..491939	+	161	15605149	-	CT422	-	metalloenzyme
433	 41.17	0	492072..493181	+	369	15605150	-	CT423	-	CBS domain-containing protein
434	 39.32	0	493370..493720	+	116	15605151	rsbV_1	CT424	-	anti-sigma F factor antagonist
435	 41.21	0	493898..495763	+	621	15605152	-	CT425	-	hypothetical protein
436	 41.53	0	495960..497069	+	369	15605153	-	CT426	-	hypothetical protein
437	 40.88	0	497042..497863	+	273	15605154	-	CT427	-	hypothetical protein
438	 43.33	0	497799..498488	+	229	15605155	ubiE	CT428	-	ubiquinone/menaquinone biosynthesis methyltransferase
439	 39.90	0	498514..499503	-	329	15605156	-	CT429	-	hypothetical protein
440	 41.18	0	499564..500391	-	275	15605157	dapF	CT430	-	diaminopimelate epimerase
441	 42.31	0	500360..500938	-	192	15605158	clpP_1	CT431	-	ATP-dependent Clp protease proteolytic subunit
442	 42.90	0	500950..502443	-	497	15605159	glyA	CT432	-	serine hydroxymethyltransferase
443	 42.26	0	502807..503478	+	223	15605160	hemD	CT433	-	uroporphyrinogen-III synthase
444	 42.46	0	503581..504117	+	178	15605161	ispF	CT434	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
445	 40.36	0	504114..505166	-	350	15605162	cysJ	CT435	-	sulfite reductase
446	 39.62	0	505183..505500	-	105	15605163	rpsJ	CT436	-	30S ribosomal protein S10
447	 43.26	0	505508..507592	-	694	15605164	fusA	CT437	-	elongation factor G
448	 43.46	0	507634..508107	-	157	15605165	rs7	CT438	-	30S ribosomal protein S7
449	 45.70	+1	508157..508528	-	123	15605611	rpsL	CT439m	-	30S ribosomal protein S12
450	 37.76	-1	508788..509126	+	112	15605166	-	CT440	-	hypothetical protein
451	 40.88	0	509284..511218	+	644	15605167	tsp	CT441	-	tail-specific protease
452	 40.62	0	511340..511792	-	150	15605168	crpA	CT442	-	hypothetical protein
453	 41.88	0	511971..513632	-	553	15605169	omcB	CT443	-	60kD cysteine-rich outer membrane protein
454	 44.57	+1	513779..514045	-	88	15605170	omcA	CT444	-	9kDa-cysteine-rich lipoprotein
455	 42.67	0	514382..514606	+	74	15605171	-	CT444.1	-	hypothetical protein
41.53	MEAN

2.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.