IslandPathversion 1.0

IslandPath Analysis: Chlamydia trachomatis D/UW-3/CX



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.53 STD DEV: 2.32
Chlamydia trachomatis D/UW-3/CX, complete genome - 1..1042519
895 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
302	 43.80	0	332710..333435	+	241	15605020	hemC	CT299	-	porphobilinogen deaminase
303	 44.25	+1	333828..334175	+	115	15605021	-	CT300	-	hypothetical protein
304	 40.18	0	334228..337032	-	934	15605022	pknD	CT301	-	serine/threonine-protein kinase
305	 40.21	0	337047..339866	-	939	15605023	valS	CT302	-	valyl-tRNA synthetase
306	 40.89	0	339993..340508	-	171	15605024	-	CT303	-	hypothetical protein
307	 43.19	0	340429..340854	-	141	15605025	atpK	CT304	-	V-type ATP synthase subunit K
308	 38.51	-1	340917..342866	-	649	15605026	atpI	CT305	-	V-type ATP synthase subunit I
309	 37.91	-1	342872..343483	-	203	15605027	atpD	CT306	-	V-type ATP synthase subunit D
310	 39.79	0	343468..344784	-	438	15605028	atpB	CT307	-	V-type ATP synthase subunit B
311	 42.74	0	344787..346562	-	591	15605029	atpA	CT308	-	V-type ATP synthase subunit A
312	 37.08	-1	346556..347356	-	266	15605030	-	CT309	-	hypothetical protein
313	 42.74	0	347523..348149	-	208	15605031	atpE	CT310	-	V-type ATP synthase subunit E
314	 41.07	0	348258..348968	+	236	15605032	-	CT311	-	hypothetical protein
315	 40.59	0	348976..349347	-	123	15605033	-	CT312	-	ferredoxin
316	 40.96	0	349392..350375	-	327	15605034	tal	CT313	-	transaldolase B
317	 42.50	0	350487..354677	-	1396	15605035	rpoC	CT314	-	DNA-directed RNA polymerase subunit beta'
318	 41.87	0	354702..358460	-	1252	15605036	rpoB	CT315	-	DNA-directed RNA polymerase subunit beta
319	 42.75	0	358821..359213	-	130	15605037	rplL	CT316	-	50S ribosomal protein L7/L12
320	 39.88	0	359245..359763	-	172	15605038	rplJ	CT317	-	50S ribosomal protein L10
321	 43.20	0	359785..360483	-	232	15605039	rplA	CT318	-	50S ribosomal protein L1
322	 40.38	0	360506..360931	-	141	15605040	rplK	CT319	-	50S ribosomal protein L11
323	 40.62	0	361037..361585	-	182	15605041	nusG	CT320	-	transcription antitermination protein NusG
324	 33.73	-2	361589..361837	-	82	15605042	secE	CT321	-	preprotein translocase subunit SecE
325	 43.46	0	361980..363164	-	394	15605043	tuf	CT322	-	elongation factor Tu
326	 45.05	+1	363512..363733	-	73	15605044	infA	CT323	-	translation initiation factor IF-1
327	 43.20	0	364145..365056	+	303	15605045	-	CT324	-	hypothetical protein
328	 39.60	0	365053..365499	+	148	15605046	-	CT325	-	hypothetical protein
329	 44.56	+1	365551..367242	-	563	15605047	-	CT326	-	hypothetical protein
330	 42.86	0	367229..367417	-	62	15605048	-	CT326.1	-	hypothetical protein
331	 43.17	0	367607..367789	-	60	15605049	-	CT326.2	-	hypothetical protein
332	 42.11	0	368509..369135	-	208	15605050	trpC	CT327	-	N-(5'-phosphoribosyl)anthranilate isomerase
333	 41.33	0	369332..370156	+	274	15605051	tpiA	CT328	-	triosephosphate isomerase
334	 41.26	0	370170..371720	+	516	15605052	xseA	CT329	-	exodeoxyribonuclease VII large subunit
335	 44.32	+1	371929..372201	+	90	15605053	-	CT330	-	hypothetical protein
336	 41.39	0	372198..374120	+	640	15605054	dxs	CT331	-	1-deoxy-D-xylulose-5-phosphate synthase
337	 42.73	0	374217..375674	+	485	15605055	pykF	CT332	-	pyruvate kinase
338	 41.78	0	375697..381057	+	1786	15605056	uvrA	CT333	-	excinuclease ABC subunit A
339	 41.61	0	381275..382675	+	466	15605057	dnaX_2	CT334	-	DNA polymerase III subunits gamma and tau
340	 42.27	0	382668..382958	+	96	15605058	-	CT335	-	hypothetical protein
341	 40.97	0	382968..384683	-	571	15605059	ptsI	CT336	-	phosphoenolpyruvate-protein phosphotransferase
342	 45.15	+1	384683..385012	-	109	15605060	ptsH	CT337	-	phosphocarrier protein HPr
343	 34.42	-2	385149..385610	-	153	15605061	-	CT338	-	hypothetical protein
344	 40.20	0	385894..387423	+	509	15605062	-	CT339	-	hypothetical protein
345	 43.50	0	387496..389532	-	678	15605063	pdhA/B	CT340	-	2-oxoisovalerate dehydrogenase alpha subunit
346	 45.55	+1	389567..390745	-	392	15605064	dnaJ	CT341	-	heat shock protein J
347	 37.29	-1	390774..390950	-	58	15605065	rpsU	CT342	-	30S ribosomal protein S21
348	 41.39	0	391147..391779	-	210	15605066	-	CT343	-	O-sialoglycoprotein endopeptidase family protein
349	 41.18	0	392089..394548	+	819	15605067	lon	CT344	-	ATP-dependent protease La
350	 40.71	0	394650..395015	+	121	15605068	-	CT345	-	hypothetical protein
351	 41.75	0	395365..396279	+	304	15605069	elaC	CT346	-	ribonuclease Z
352	 40.51	0	396341..397288	+	315	15605070	xerC	CT347	-	site-specific tyrosine recombinase XerC
353	 41.71	0	397342..398928	+	528	15605071	yjjK	CT348	-	ABC transporter ATPase
354	 41.29	0	398964..399554	+	196	15605072	maf	CT349	-	Maf-like protein
355	 40.09	0	399536..401236	+	566	15605073	-	CT350	-	hypothetical protein
356	 39.21	-1	401243..403336	+	697	15605074	-	CT351	-	hypothetical protein
357	 38.19	-1	403410..403718	-	102	15605612	secG	CT351a	-	preprotein translocase subunit SecG
358	 39.54	0	403499..403804	+	101	15605075	-	CT352	-	hypothetical protein
359	 38.28	-1	403874..404419	-	181	15605076	def	CT353	-	peptide deformylase
360	 41.61	0	404694..405527	-	277	15605077	ksgA	CT354	-	dimethyladenosine transferase
361	 43.03	0	405543..406604	-	353	15605078	-	CT355	-	hypothetical protein
362	 40.76	0	406909..409023	-	704	15605079	yyaL	CT356	-	hypothetical protein
363	 38.89	-1	409341..409628	-	95	15605080	-	CT357R	-	hypothetical protein
364	 43.24	0	409480..409812	+	110	15605081	-	CT357	-	hypothetical protein
365	 44.69	+1	409838..410374	+	178	15605082	-	CT358	-	hypothetical protein
366	 40.61	0	410434..411024	-	196	15605083	-	CT359	-	hypothetical protein
367	 38.12	-1	411276..411902	-	208	15605084	-	CT360	-	hypothetical protein
368	 43.21	0	412064..412924	-	286	15605085	dapA	CT361	-	dihydrodipicolinate synthase
369	 41.36	0	412934..414229	-	431	15605086	lysC	CT362	-	aspartate kinase
370	 40.40	0	414222..415226	-	334	15605087	asd	CT363	-	aspartate-semialdehyde dehydrogenase
371	 40.81	0	415236..415997	-	253	15605088	dapB	CT364	-	dihydrodipicolinate reductase
372	 41.67	0	416174..417901	-	575	15605089	-	CT365	-	hypothetical protein
373	 43.99	+1	418071..419393	+	440	15605090	aroA	CT366	-	3-phosphoshikimate 1-carboxyvinyltransferase
374	 41.98	0	419335..419889	+	184	15605091	aroL	CT367	-	shikimate kinase
375	 45.81	+1	419882..420955	+	357	15605092	aroC	CT368	-	chorismate synthase
376	 40.37	0	420952..422073	+	373	15605093	aroB	CT369	-	3-dehydroquinate synthase
377	 42.38	0	422054..423490	+	478	15605094	aroDE	CT370	-	bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein
378	 39.57	0	423532..424317	+	261	15605095	-	CT371	-	hypothetical protein
379	 43.34	0	424459..425787	+	442	15605096	-	CT372	-	hypothetical protein
380	 40.99	0	425856..426443	+	195	15605097	-	CT373	-	hypothetical protein
381	 41.05	0	426459..427910	+	483	15605098	arcD	CT374	-	arginine/ornithine antiporter
382	 46.18	+2	428082..429140	+	352	15605099	-	CT375	-	D-amino acid dehydrogenase
383	 44.44	+1	429182..430162	-	326	15605100	mdhC	CT376	-	malate dehydrogenase
384	 39.01	-1	430353..430493	-	46	15605101	ltuA	CT377	-	late transcription unit A protein
385	 41.32	0	430608..432185	-	525	15605102	pgi	CT378	-	glucose-6-phosphate isomerase
386	 40.03	0	432298..433641	-	447	15605103	hflX	CT379	-	GTP binding protein
387	 40.45	0	433654..434454	-	266	15605104	phnP	CT380	-	metal-dependent hydrolase
388	 41.47	0	434483..435256	-	257	15605105	artJ	CT381	-	arginine binding protein
389	 42.41	0	435325..436161	-	278	15605106	aroG	CT382	-	3-deoxy-7-phosphoheptulonate synthase
390	 33.85	-2	436298..436489	-	63	15605107	-	CT382.1	-	hypothetical protein
391	 44.67	+1	436672..437403	+	243	15605108	-	CT383	-	hypothetical protein
392	 42.28	0	437414..439033	-	539	15605109	-	CT384	-	hypothetical protein
393	 41.07	0	439048..439383	-	111	15605110	ycfF	CT385	-	Hit family hydrolase
394	 42.18	0	439380..440249	-	289	15605111	-	CT386	-	metal dependent hydrolase
395	 43.16	0	440536..442611	+	691	15605112	-	CT387	-	hypothetical protein
396	 38.94	-1	442625..442927	-	100	161723222	-	CT388	-	hypothetical protein
397	 42.30	0	443154..444380	+	408	15605114	-	CT389	-	hypothetical protein
398	 41.86	0	444488..445672	+	394	15605115	aspC	CT390	-	L,L-diaminopimelate aminotransferase
399	 39.98	0	445680..446687	+	335	15605116	-	CT391	-	hypothetical protein
400	 47.09	+2	446693..447826	-	377	15605117	yprS	CT392	-	hypothetical protein
401	 43.01	0	448027..449772	+	581	15605118	proS	CT393	-	prolyl-tRNA synthetase
41.53	MEAN

2.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.