IslandPathversion 1.0

IslandPath Analysis: Chlamydia trachomatis D/UW-3/CX



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.53 STD DEV: 2.32
Chlamydia trachomatis D/UW-3/CX, complete genome - 1..1042519
895 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
252	 44.73	+1	279485..279835	+	116	15604970	-	CT249	-	hypothetical protein
253	 39.75	0	279889..281259	-	456	15604971	dnaA	CT250	-	chromosomal replication initiation protein
254	 39.72	0	281336..283699	-	787	15604972	-	CT251	-	putative inner membrane protein translocase component YidC
255	 41.27	0	284009..284827	-	272	15604973	lgt	CT252	-	prolipoprotein diacylglyceryl transferase
256	 42.28	0	285078..285725	+	215	15604974	-	CT253	-	hypothetical protein
257	 40.34	0	285729..286499	+	256	15604975	-	CT254	-	hypothetical protein
258	 39.84	0	286707..287090	-	127	15604976	-	CT255	-	hypothetical protein
259	 39.44	0	287279..288523	+	414	15604977	-	CT256	-	hypothetical protein
260	 38.27	-1	288513..289727	+	404	15604978	-	CT257	-	hypothetical protein
261	 40.71	0	289731..290855	-	374	15604979	yhfO	CT258	-	NifS family pyridoxal phosphate-dependent protein
262	 39.63	0	290861..291607	-	248	15604980	-	CT259	-	PP2C phosphatase family protein
263	 40.04	0	291930..292421	+	163	15604981	-	CT260	-	hypothetical protein
264	 40.49	0	292430..293128	+	232	15604982	dnaQ_1	CT261	-	DNA polymerase III subunit epsilon
265	 38.78	-1	293125..293895	+	256	15604983	-	CT262	-	hypothetical protein
266	 39.59	0	293888..294478	+	196	15604984	-	CT263	-	hypothetical protein
267	 38.79	-1	294499..296439	-	646	15604985	msbA	CT264	-	transport ATP binding protein
268	 41.33	0	296405..297379	-	324	15604986	accA	CT265	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
269	 40.19	0	297512..298693	-	393	15604987	-	CT266	-	hypothetical protein
270	 36.96	-1	298811..299113	-	100	15604988	ihfA	CT267	-	integration host factor alpha-subunit
271	 40.26	0	299333..300112	-	259	15604989	amiA	CT268	-	N-acetylmuramoyl-L-alanine amidase
272	 39.53	0	300027..301478	-	483	15604990	murE	CT269	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
273	 40.17	0	301801..303744	-	647	15604991	pbp3	CT270	-	penicillin-binding protein
274	 35.76	-2	303731..304018	-	95	15604992	-	CT271	-	hypothetical protein
275	 40.97	0	304018..304920	-	300	15604993	mraW	CT272	-	S-adenosyl-methyltransferase MraW
276	 38.98	-1	305198..305764	+	188	15604994	-	CT273	-	hypothetical protein
277	 41.43	0	305771..306190	+	139	15604995	-	CT274	-	hypothetical protein
278	 37.87	-1	306433..307800	+	455	15604996	dnaA	CT275	-	chromosomal replication initiation protein
279	 41.03	0	307839..308423	+	194	15604997	-	CT276	-	hypothetical protein
280	 36.36	-2	308395..309054	-	219	15604998	-	CT277	-	hypothetical protein
281	 42.00	0	309056..310567	+	503	15604999	nqr2	CT278	-	Na(+)-translocating NADH-quinone reductase subunit B
282	 40.48	0	310571..311521	+	316	15605000	nqr3	CT279	-	Na(+)-translocating NADH-quinone reductase subunit C
283	 40.50	0	311511..312152	+	213	15605001	nqr4	CT280	-	Na(+)-translocating NADH-quinone reductase subunit D
284	 40.41	0	312158..312892	+	244	15605002	nqr5	CT281	-	Na(+)-translocating NADH-quinone reductase subunit E
285	 37.01	-1	312916..313269	-	117	15605003	gcsH	CT282	-	glycine cleavage system protein H
286	 38.44	-1	313289..315385	-	698	15605004	-	CT283	-	hypothetical protein
287	 38.53	-1	315556..316980	-	474	15605005	-	CT284	-	phospholipase D
288	 39.58	0	316986..317705	-	239	15605006	lplA_1	CT285	-	lipoate-protein ligase A
289	 41.29	0	317970..320534	+	854	15605007	clpC	CT286	-	ClpC protease ATPase
290	 41.97	0	320515..321591	-	358	15605008	trmU	CT287	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
291	 40.78	0	321823..323514	+	563	15605009	-	CT288	-	hypothetical protein
292	 42.81	0	323601..324740	-	379	15605010	-	CT289	-	hypothetical protein
293	 39.68	0	324798..325475	-	225	15605011	ptsN_1	CT290	-	PTS IIA protein + HTH DNA-binding domain
294	 41.30	0	325478..325954	-	158	15605012	ptsN_2	CT291	-	PTS IIA protein
295	 45.66	+1	325956..326393	-	145	15605013	dut	CT292	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
296	 41.21	0	326430..327356	-	308	15605014	accD	CT293	-	acetyl-CoA carboxylase subunit beta
297	 40.42	0	327428..328048	-	206	15605015	sodM	CT294	-	superoxide dismutase
298	 41.30	0	328180..329961	-	593	15605016	mrsA_1	CT295	-	phosphoglucomutase
299	 45.30	+1	330113..330580	-	155	15605017	-	CT296	-	hypothetical protein
300	 39.51	0	330689..331384	+	231	15605018	rnc	CT297	-	ribonuclease III
301	 40.37	0	331368..332732	+	454	15605019	radA	CT298	-	DNA repair protein RadA
302	 43.80	0	332710..333435	+	241	15605020	hemC	CT299	-	porphobilinogen deaminase
303	 44.25	+1	333828..334175	+	115	15605021	-	CT300	-	hypothetical protein
304	 40.18	0	334228..337032	-	934	15605022	pknD	CT301	-	serine/threonine-protein kinase
305	 40.21	0	337047..339866	-	939	15605023	valS	CT302	-	valyl-tRNA synthetase
306	 40.89	0	339993..340508	-	171	15605024	-	CT303	-	hypothetical protein
307	 43.19	0	340429..340854	-	141	15605025	atpK	CT304	-	V-type ATP synthase subunit K
308	 38.51	-1	340917..342866	-	649	15605026	atpI	CT305	-	V-type ATP synthase subunit I
309	 37.91	-1	342872..343483	-	203	15605027	atpD	CT306	-	V-type ATP synthase subunit D
310	 39.79	0	343468..344784	-	438	15605028	atpB	CT307	-	V-type ATP synthase subunit B
311	 42.74	0	344787..346562	-	591	15605029	atpA	CT308	-	V-type ATP synthase subunit A
312	 37.08	-1	346556..347356	-	266	15605030	-	CT309	-	hypothetical protein
313	 42.74	0	347523..348149	-	208	15605031	atpE	CT310	-	V-type ATP synthase subunit E
314	 41.07	0	348258..348968	+	236	15605032	-	CT311	-	hypothetical protein
315	 40.59	0	348976..349347	-	123	15605033	-	CT312	-	ferredoxin
316	 40.96	0	349392..350375	-	327	15605034	tal	CT313	-	transaldolase B
317	 42.50	0	350487..354677	-	1396	15605035	rpoC	CT314	-	DNA-directed RNA polymerase subunit beta'
318	 41.87	0	354702..358460	-	1252	15605036	rpoB	CT315	-	DNA-directed RNA polymerase subunit beta
319	 42.75	0	358821..359213	-	130	15605037	rplL	CT316	-	50S ribosomal protein L7/L12
320	 39.88	0	359245..359763	-	172	15605038	rplJ	CT317	-	50S ribosomal protein L10
321	 43.20	0	359785..360483	-	232	15605039	rplA	CT318	-	50S ribosomal protein L1
322	 40.38	0	360506..360931	-	141	15605040	rplK	CT319	-	50S ribosomal protein L11
323	 40.62	0	361037..361585	-	182	15605041	nusG	CT320	-	transcription antitermination protein NusG
324	 33.73	-2	361589..361837	-	82	15605042	secE	CT321	-	preprotein translocase subunit SecE
325	 43.46	0	361980..363164	-	394	15605043	tuf	CT322	-	elongation factor Tu
326	 45.05	+1	363512..363733	-	73	15605044	infA	CT323	-	translation initiation factor IF-1
327	 43.20	0	364145..365056	+	303	15605045	-	CT324	-	hypothetical protein
328	 39.60	0	365053..365499	+	148	15605046	-	CT325	-	hypothetical protein
329	 44.56	+1	365551..367242	-	563	15605047	-	CT326	-	hypothetical protein
330	 42.86	0	367229..367417	-	62	15605048	-	CT326.1	-	hypothetical protein
331	 43.17	0	367607..367789	-	60	15605049	-	CT326.2	-	hypothetical protein
332	 42.11	0	368509..369135	-	208	15605050	trpC	CT327	-	N-(5'-phosphoribosyl)anthranilate isomerase
333	 41.33	0	369332..370156	+	274	15605051	tpiA	CT328	-	triosephosphate isomerase
334	 41.26	0	370170..371720	+	516	15605052	xseA	CT329	-	exodeoxyribonuclease VII large subunit
335	 44.32	+1	371929..372201	+	90	15605053	-	CT330	-	hypothetical protein
336	 41.39	0	372198..374120	+	640	15605054	dxs	CT331	-	1-deoxy-D-xylulose-5-phosphate synthase
337	 42.73	0	374217..375674	+	485	15605055	pykF	CT332	-	pyruvate kinase
338	 41.78	0	375697..381057	+	1786	15605056	uvrA	CT333	-	excinuclease ABC subunit A
339	 41.61	0	381275..382675	+	466	15605057	dnaX_2	CT334	-	DNA polymerase III subunits gamma and tau
340	 42.27	0	382668..382958	+	96	15605058	-	CT335	-	hypothetical protein
341	 40.97	0	382968..384683	-	571	15605059	ptsI	CT336	-	phosphoenolpyruvate-protein phosphotransferase
342	 45.15	+1	384683..385012	-	109	15605060	ptsH	CT337	-	phosphocarrier protein HPr
343	 34.42	-2	385149..385610	-	153	15605061	-	CT338	-	hypothetical protein
344	 40.20	0	385894..387423	+	509	15605062	-	CT339	-	hypothetical protein
345	 43.50	0	387496..389532	-	678	15605063	pdhA/B	CT340	-	2-oxoisovalerate dehydrogenase alpha subunit
346	 45.55	+1	389567..390745	-	392	15605064	dnaJ	CT341	-	heat shock protein J
347	 37.29	-1	390774..390950	-	58	15605065	rpsU	CT342	-	30S ribosomal protein S21
348	 41.39	0	391147..391779	-	210	15605066	-	CT343	-	O-sialoglycoprotein endopeptidase family protein
349	 41.18	0	392089..394548	+	819	15605067	lon	CT344	-	ATP-dependent protease La
350	 40.71	0	394650..395015	+	121	15605068	-	CT345	-	hypothetical protein
351	 41.75	0	395365..396279	+	304	15605069	elaC	CT346	-	ribonuclease Z
41.53	MEAN

2.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.