^{version
1.0}

IslandPath Analysis: Chlamydia trachomatis D/UW-3/CX

Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).

A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.53 STD DEV: 2.32

Chlamydia trachomatis D/UW-3/CX, complete genome - 1..1042519
895 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 41.76	0	1321..1593	-	90	15604719	-	CT001	-	hypothetical protein
2	 39.27	0	1794..2096	+	100	15604720	gatC	CT002	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
3	 43.22	0	2108..3583	+	491	15604721	gatA	CT003	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
4	 43.15	0	3585..5051	+	488	15604722	gatB	CT004	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
5	 46.43	+2	5150..6241	-	363	15604723	-	CT005	-	hypothetical protein
6	 45.09	+1	6369..6938	-	189	15604724	-	CT006	-	hypothetical protein
7	 40.38	0	7251..8201	+	316	15604725	-	CT007	-	hypothetical protein
8	 42.30	0	8217..9119	-	300	15604726	rnhB_1	CT008	-	ribonuclease HIII
9	 40.28	0	9373..9804	+	143	15604727	yfgA	CT009	-	HTH transcriptional regulator
10	 41.30	0	9791..11158	-	455	15604728	htrB	CT010	-	lipid A biosynthesis lauroyl acyltransferase
11	 37.47	-1	11290..12546	-	418	15604729	-	CT011	-	hypothetical protein
12	 42.52	0	12543..13337	-	264	15604730	ybbP	CT012	-	hypothetical protein
13	 40.64	0	13612..14952	+	446	15604731	cydA	CT013	-	cytochrome d ubiquinol oxidase subunit I
14	 40.30	0	14964..16025	+	353	15604732	cydB	CT014	-	cytochrome d ubiquinol oxidase subunit II
15	 40.31	0	16123..17427	-	434	15604733	phoH	CT015	-	ATPase
16	 40.47	0	17636..18364	+	242	15604734	-	CT016	-	hypothetical protein
17	 41.01	0	18550..19851	+	433	15604735	-	CT017	-	hypothetical protein
18	 44.30	+1	19913..20386	-	157	15604736	-	CT018	-	hypothetical protein
19	 41.95	0	21432..24542	+	1036	15604737	ileS	CT019	-	isoleucyl-tRNA synthetase
20	 40.38	0	24601..26487	-	628	15604738	lepB	CT020	-	signal peptidase I
21	 39.65	0	26673..27416	-	247	15604739	-	CT021	-	hypothetical protein
22	 41.90	0	27492..27818	+	108	15604740	rpmE2	CT022	-	50S ribosomal protein L31 type B
23	 45.09	+1	28006..29085	+	359	15604741	prfA	CT023	-	peptide chain release factor 1
24	 43.18	0	29069..29941	+	290	15604742	-	CT024	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
25	 43.36	0	29938..31284	+	448	15604743	ffh	CT025	-	signal recognition particle, subunit FFH/SRP54
26	 42.74	0	31275..31625	+	116	15604744	rpsP	CT026	-	30S ribosomal protein S16
27	 44.10	+1	31641..32699	+	352	15604745	trmD	CT027	-	fused tRNA (guanine-N(1)-)-methyltransferase/uncharacterized domain-containing protein
28	 45.90	+1	32725..33090	+	121	15604746	rplS	CT028	-	50S ribosomal protein L19
29	 44.04	+1	33154..33807	+	217	15604747	rnhB	CT029	-	ribonuclease HII
30	 42.07	0	33798..34415	+	205	15604748	gmk	CT030	-	guanylate kinase
31	 40.59	0	34408..34710	+	100	15604749	-	CT031	-	hypothetical protein
32	 41.44	0	34710..36362	+	550	15604750	metG	CT032	-	methionyl-tRNA synthetase
33	 40.29	0	36502..38742	-	746	15604751	recD_1	CT033	-	exodeoxyribonuclease V alpha chain
34	 42.79	0	38990..40015	-	341	15604752	ytfF	CT034	-	cationic amino acid transporter
35	 44.96	+1	40354..41127	+	257	15604753	-	CT035	-	biotin protein ligase
36	 41.17	0	41092..42303	-	403	15604754	-	CT036	-	hypothetical protein
37	 38.94	-1	42310..42666	-	118	15604755	-	CT037	-	hypothetical protein
38	 39.03	-1	42865..43215	-	116	15604756	-	CT038	-	hypothetical protein
39	 41.36	0	43231..43803	-	190	15604757	dcd	CT039	-	deoxycytidine triphosphate deaminase
40	 35.95	-2	43891..44043	+	50	15604758	-	CT039.1	-	hypothetical protein
41	 43.18	0	44085..45089	+	334	15604759	ruvB	CT040	-	Holliday junction DNA helicase B
42	 42.44	0	45091..45903	+	270	15604760	-	CT041	-	hypothetical protein
43	 42.13	0	45965..47965	-	666	15604761	glgX	CT042	-	glycogen hydrolase (debranching)
44	 45.83	+1	48083..48586	-	167	15604762	-	CT043	-	hypothetical protein
45	 40.30	0	49052..49525	+	157	15604763	ssb	CT044	-	single-strand DNA-binding protein
46	 41.80	0	49866..51365	+	499	15604764	pepA	CT045	-	leucyl aminopeptidase
47	 41.34	0	51504..52115	+	203	15604765	hctB	CT046	-	histone-like protein 2
48	 38.94	-1	52270..53214	+	314	15604766	-	CT047	-	hypothetical protein
49	 42.44	0	53309..54022	+	237	15604767	yraL	CT048	-	SAM-dependent methyltransferase
50	 45.55	+1	54113..55585	+	490	15604768	-	CT049	-	hypothetical protein
51	 41.96	0	55644..57254	-	536	15604769	-	CT050	-	hypothetical protein
52	 41.01	0	57358..58920	-	520	15604770	-	CT051	-	hypothetical protein
53	 41.34	0	58974..60110	-	378	15604771	hemN_1	CT052	-	coproporphyrinogen III oxidase
54	 44.74	+1	60100..60546	-	148	15604772	-	CT053	-	hypothetical protein
55	 42.02	0	60878..63595	+	905	15604773	kgd	CT054	-	alpha-ketoglutarate decarboxylase
56	 42.44	0	63599..64696	+	365	15604774	sucB_1	CT055	-	dihydrolipoamide acetyltransferase
57	 43.72	0	64725..65456	-	243	15604775	-	CT056	-	hypothetical protein
58	 42.90	0	65465..67273	-	602	15604776	gcpE	CT057	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
59	 44.47	+1	67425..68528	-	367	15604777	-	CT058	-	hypothetical protein
60	 45.65	+1	68608..68883	-	91	15604778	fer	CT059	-	ferredoxin
61	 41.36	0	69065..70882	+	605	15604779	flhA	CT060	-	type III secretion system protein
62	 41.60	0	70990..71751	+	253	15604780	fliA	CT061	-	RNA polymerase sigma factor sigma-28
63	 41.32	0	71910..73148	+	412	15604781	tyrS	CT062	-	tyrosyl-tRNA synthetase
64	 43.17	0	73158..74600	+	480	15604782	gnd	CT063	-	6-phosphogluconate dehydrogenase
65	 40.41	0	74661..76469	-	602	15604783	lepA	CT064	-	GTP-binding protein LepA
66	 43.23	0	76655..78241	-	528	15604784	-	CT065	-	ADP/ATP translocase
67	 40.67	0	78592..79068	-	158	15604785	-	CT066	-	hypothetical protein
68	 41.28	0	79726..80706	+	326	15604786	ytgA	CT067	-	solute protein binding family
69	 41.54	0	80699..81478	+	259	15604787	ytgB_1	CT068	-	rRNA methylase
70	 38.64	-1	81479..82834	+	451	15604788	ytgC	CT069	-	integral membrane protein
71	 37.30	-1	82824..83780	+	318	15604789	ytgD	CT070	-	integral membrane protein
72	 41.58	0	83807..84946	+	379	15604790	yaeM	CT071	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
73	 42.80	0	85142..87001	+	619	15604791	yaeL	CT072	-	metalloprotease
74	 39.88	0	86948..87925	-	325	15604792	-	CT073	-	OMP [leader (19) peptide]
75	 40.35	0	88083..89180	-	365	15604793	recF	CT074	-	recombination protein F
76	 40.61	0	89180..90430	-	416	15604794	dnaN	CT075	-	DNA polymerase III subunit beta
77	 41.67	0	90560..91015	+	151	15604795	smpB	CT076	-	SsrA-binding protein
78	 44.16	+1	90993..91943	-	316	15604796	yojL	CT077	-	hypothetical protein
79	 44.10	+1	91913..92776	-	287	15604797	folD	CT078	-	methylene tetrahydrofolate dehydrogenase
80	 44.14	+1	92894..93337	-	147	15604798	-	CT079	-	hypothetical protein
81	 39.46	0	93614..93907	+	97	15604799	ltuB	CT080	-	late transcription unit B protein
82	 37.37	-1	93964..94260	+	98	15604800	-	CT081	-	hypothetical protein
83	 43.26	0	94270..95952	+	560	15604801	-	CT082	-	hypothetical protein
84	 41.20	0	95949..96431	+	160	15604802	-	CT083	-	hypothetical protein
85	 38.58	-1	96445..97530	-	361	15604803	-	CT084	-	phopholipase D superfamily protein
86	 42.76	0	97700..99439	-	579	15604804	-	CT085	-	hypothetical protein
87	 40.37	0	99565..99834	-	89	15604805	rpmB	CT086	-	50S ribosomal protein L28
88	 41.86	0	99983..101566	-	527	15604806	malQ	CT087	-	4-alpha-glucanotransferase
89	 38.32	-1	101570..102010	-	146	15604807	sycE	CT088	-	secretion chaperone
90	 43.13	0	102048..103313	-	421	15604808	lcrE	CT089	-	low calcium response E
91	 42.41	0	103331..105457	-	708	15604809	lcrD	CT090	-	low calcium response D
92	 39.15	-1	105457..106539	-	360	15604810	yscU	CT091	-	type III secretion system protein
93	 41.60	0	106796..107896	+	366	15604811	ychF	CT092	-	translation-associated GTPase
94	 41.61	0	107905..108810	-	301	15604812	ribF	CT093	-	bifunctional riboflavin kinase/FMN adenylyltransferase
95	 41.60	0	108767..109492	-	241	15604813	truB	CT094	-	tRNA pseudouridine synthase B
96	 37.90	-1	109530..109901	-	123	15604814	rbfA	CT095	-	ribosome-binding factor A
97	 42.74	0	109908..112586	-	892	15604815	infB	CT096	-	translation initiation factor IF-2
98	 40.23	0	112543..113847	-	434	15604816	nusA	CT097	-	transcription elongation factor NusA
99	 40.41	0	113965..115674	-	569	15604817	rpsA	CT098	-	30S ribosomal protein S1
100	 42.90	0	115919..116974	+	351	15604818	trxB	CT099	-	thioredoxin reductase
41.53	MEAN

2.32	STD DEV

Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.