IslandPathversion 1.0

IslandPath Analysis: Chlamydia trachomatis D/UW-3/CX



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.53 STD DEV: 2.32
Chlamydia trachomatis D/UW-3/CX, complete genome - 1..1042519
895 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
202	 39.01	-1	225126..225971	+	281	15604920	oppC_1	CT200	-	oligopeptide permease
203	 41.97	0	225964..226797	+	277	15604921	oppD	CT201	-	oligopeptide transport ATPase
204	 37.77	-1	226812..227555	+	247	15604922	oppF	CT202	-	oligopeptide transport ATPase
205	 40.21	0	227862..228617	+	251	15604923	-	CT203	-	hypothetical protein
206	 39.90	0	228647..230062	+	471	15604924	ybhI	CT204	-	dicarboxylate translocator
207	 38.63	-1	230082..231743	+	553	15604925	pfkA_1	CT205	-	diphosphate--fructose-6-phosphate 1-phosphotransferase
208	 40.64	0	231752..232600	+	282	15604926	-	CT206	-	acyltransferase family protein
209	 38.62	-1	232582..234228	+	548	15604927	pfkA_2	CT207	-	diphosphate--fructose-6-phosphate 1-phosphotransferase
210	 38.19	-1	234474..235769	-	431	15604928	gseA	CT208	-	3-deoxy-D-manno-octulosonic-acid transferase
211	 42.68	0	235766..238225	-	819	15604929	leuS	CT209	-	leucyl-tRNA synthetase
212	 42.24	0	238422..239690	+	422	15604930	hemL	CT210	-	glutamate-1-semialdehyde aminotransferase
213	 39.82	0	239682..240251	-	189	15604931	-	CT211	-	hypothetical protein
214	 38.70	-1	240271..240717	-	148	15604932	-	CT212	-	hypothetical protein
215	 43.21	0	240707..241435	-	242	15604933	rpiA	CT213	-	ribose-5-phosphate isomerase A
216	 39.54	0	241530..243173	-	547	15604934	-	CT214	-	hypothetical protein
217	 42.50	0	243477..244523	+	348	15604935	dhnA	CT215	-	fructose-bisphosphate aldolase
218	 40.47	0	244537..245937	+	466	15604936	xasA	CT216	-	glutamate/gamma-aminobutyrate antiporter
219	 43.83	0	246091..246795	+	234	15604937	ydaO	CT217	-	PP-loop superfamily ATPase
220	 42.02	0	246926..247777	+	283	15604938	surE	CT218	-	stationary phase survival protein SurE
221	 38.17	-1	247889..248797	+	302	15604939	ubiA	CT219	-	prenyltransferase
222	 39.90	0	248794..249372	+	192	15604940	ubiX	CT220	-	aromatic acid decarboxylase
223	 40.69	0	249369..250265	-	298	15604941	yqfU	CT221	-	hypothetical protein
224	 39.72	0	250554..250694	-	46	15604942	-	CT221.1	-	hypothetical protein
225	 38.46	-1	250721..251110	-	129	15604943	-	CT222	-	hypothetical protein
226	 41.70	0	251252..252064	-	270	15604944	-	CT223	-	hypothetical protein
227	 40.54	0	252455..252898	-	147	15604945	-	CT224	-	hypothetical protein
228	 38.48	-1	252989..253357	-	122	15604946	-	CT225	-	hypothetical protein
229	 39.74	0	253456..253986	-	176	15604947	-	CT226	-	hypothetical protein
230	 39.80	0	254102..254503	-	133	15604948	-	CT227	-	hypothetical protein
231	 40.44	0	254774..255364	-	196	15604949	-	CT228	-	hypothetical protein
232	 42.75	0	255514..256161	-	215	15604950	-	CT229	-	hypothetical protein
233	 42.39	0	256387..257634	+	415	15604951	-	CT230	-	neutral amino acid (glutamate) transporter
234	 40.39	0	257818..259290	+	490	15604952	-	CT231	-	sodium-dependent amino acid transporter
235	 41.95	0	259395..259742	+	115	15604953	incB	CT232	-	inclusion membrane protein B
236	 45.25	+1	259819..260355	+	178	15604954	incC	CT233	-	inclusion membrane protein C
237	 39.79	0	260413..263199	+	928	15604955	-	CT234	-	hypothetical protein
238	 36.47	-2	263228..263641	+	137	15604956	-	CT235	-	CRP family transcriptional regulator
239	 38.03	-1	263702..263935	-	77	15604957	acpP	CT236	-	acyl carrier protein
240	 41.90	0	264304..265050	-	248	15604958	fabG	CT237	-	3-ketoacyl-(acyl-carrier-protein) reductase
241	 41.32	0	265047..265973	-	308	15604959	fabD	CT238	-	acyl-carrier-protein S-malonyltransferase
242	 43.29	0	265990..266973	-	327	15604960	fabH	CT239	-	3-oxoacyl-(acyl carrier protein) synthase III
243	 35.16	-2	267111..267713	+	200	15604961	recR	CT240	-	recombination protein RecR
244	 38.59	-1	268088..270466	+	792	15604962	yaeT	CT241	-	OMP85 family membrane protein
245	 37.16	-1	270535..271056	+	173	15604963	-	CT242	-	OmpH-like Outer membrane protein
246	 41.69	0	271084..272148	+	354	15604964	lpxD	CT243	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
247	 36.59	-2	272145..273341	-	398	15604965	-	CT244	-	hypothetical protein
248	 41.64	0	273563..274585	+	340	15604966	pdhA	CT245	-	pyruvate dehydrogenase E1 component alpha subunit
249	 40.63	0	274578..275564	+	328	15604967	pdhB	CT246	-	pyruvate dehydrogenase E1 component beta subunit
250	 39.69	0	275569..276858	+	429	15604968	pdhC	CT247	-	branched-chain alpha-keto acid dehydrogenase subunit E2
251	 38.49	-1	276885..279329	-	814	15604969	glgP	CT248	-	glycogen phosphorylase
252	 44.73	+1	279485..279835	+	116	15604970	-	CT249	-	hypothetical protein
253	 39.75	0	279889..281259	-	456	15604971	dnaA	CT250	-	chromosomal replication initiation protein
254	 39.72	0	281336..283699	-	787	15604972	-	CT251	-	putative inner membrane protein translocase component YidC
255	 41.27	0	284009..284827	-	272	15604973	lgt	CT252	-	prolipoprotein diacylglyceryl transferase
256	 42.28	0	285078..285725	+	215	15604974	-	CT253	-	hypothetical protein
257	 40.34	0	285729..286499	+	256	15604975	-	CT254	-	hypothetical protein
258	 39.84	0	286707..287090	-	127	15604976	-	CT255	-	hypothetical protein
259	 39.44	0	287279..288523	+	414	15604977	-	CT256	-	hypothetical protein
260	 38.27	-1	288513..289727	+	404	15604978	-	CT257	-	hypothetical protein
261	 40.71	0	289731..290855	-	374	15604979	yhfO	CT258	-	NifS family pyridoxal phosphate-dependent protein
262	 39.63	0	290861..291607	-	248	15604980	-	CT259	-	PP2C phosphatase family protein
263	 40.04	0	291930..292421	+	163	15604981	-	CT260	-	hypothetical protein
264	 40.49	0	292430..293128	+	232	15604982	dnaQ_1	CT261	-	DNA polymerase III subunit epsilon
265	 38.78	-1	293125..293895	+	256	15604983	-	CT262	-	hypothetical protein
266	 39.59	0	293888..294478	+	196	15604984	-	CT263	-	hypothetical protein
267	 38.79	-1	294499..296439	-	646	15604985	msbA	CT264	-	transport ATP binding protein
268	 41.33	0	296405..297379	-	324	15604986	accA	CT265	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
269	 40.19	0	297512..298693	-	393	15604987	-	CT266	-	hypothetical protein
270	 36.96	-1	298811..299113	-	100	15604988	ihfA	CT267	-	integration host factor alpha-subunit
271	 40.26	0	299333..300112	-	259	15604989	amiA	CT268	-	N-acetylmuramoyl-L-alanine amidase
272	 39.53	0	300027..301478	-	483	15604990	murE	CT269	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
273	 40.17	0	301801..303744	-	647	15604991	pbp3	CT270	-	penicillin-binding protein
274	 35.76	-2	303731..304018	-	95	15604992	-	CT271	-	hypothetical protein
275	 40.97	0	304018..304920	-	300	15604993	mraW	CT272	-	S-adenosyl-methyltransferase MraW
276	 38.98	-1	305198..305764	+	188	15604994	-	CT273	-	hypothetical protein
277	 41.43	0	305771..306190	+	139	15604995	-	CT274	-	hypothetical protein
278	 37.87	-1	306433..307800	+	455	15604996	dnaA	CT275	-	chromosomal replication initiation protein
279	 41.03	0	307839..308423	+	194	15604997	-	CT276	-	hypothetical protein
280	 36.36	-2	308395..309054	-	219	15604998	-	CT277	-	hypothetical protein
281	 42.00	0	309056..310567	+	503	15604999	nqr2	CT278	-	Na(+)-translocating NADH-quinone reductase subunit B
282	 40.48	0	310571..311521	+	316	15605000	nqr3	CT279	-	Na(+)-translocating NADH-quinone reductase subunit C
283	 40.50	0	311511..312152	+	213	15605001	nqr4	CT280	-	Na(+)-translocating NADH-quinone reductase subunit D
284	 40.41	0	312158..312892	+	244	15605002	nqr5	CT281	-	Na(+)-translocating NADH-quinone reductase subunit E
285	 37.01	-1	312916..313269	-	117	15605003	gcsH	CT282	-	glycine cleavage system protein H
286	 38.44	-1	313289..315385	-	698	15605004	-	CT283	-	hypothetical protein
287	 38.53	-1	315556..316980	-	474	15605005	-	CT284	-	phospholipase D
288	 39.58	0	316986..317705	-	239	15605006	lplA_1	CT285	-	lipoate-protein ligase A
289	 41.29	0	317970..320534	+	854	15605007	clpC	CT286	-	ClpC protease ATPase
290	 41.97	0	320515..321591	-	358	15605008	trmU	CT287	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
291	 40.78	0	321823..323514	+	563	15605009	-	CT288	-	hypothetical protein
292	 42.81	0	323601..324740	-	379	15605010	-	CT289	-	hypothetical protein
293	 39.68	0	324798..325475	-	225	15605011	ptsN_1	CT290	-	PTS IIA protein + HTH DNA-binding domain
294	 41.30	0	325478..325954	-	158	15605012	ptsN_2	CT291	-	PTS IIA protein
295	 45.66	+1	325956..326393	-	145	15605013	dut	CT292	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
296	 41.21	0	326430..327356	-	308	15605014	accD	CT293	-	acetyl-CoA carboxylase subunit beta
297	 40.42	0	327428..328048	-	206	15605015	sodM	CT294	-	superoxide dismutase
298	 41.30	0	328180..329961	-	593	15605016	mrsA_1	CT295	-	phosphoglucomutase
299	 45.30	+1	330113..330580	-	155	15605017	-	CT296	-	hypothetical protein
300	 39.51	0	330689..331384	+	231	15605018	rnc	CT297	-	ribonuclease III
301	 40.37	0	331368..332732	+	454	15605019	radA	CT298	-	DNA repair protein RadA
41.53	MEAN

2.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.