IslandPathversion 1.0

IslandPath Analysis: Chlamydia trachomatis D/UW-3/CX



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.53 STD DEV: 2.32
Chlamydia trachomatis D/UW-3/CX, complete genome - 1..1042519
895 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
137	 43.19	0	153315..154034	+	239	15604855	-	CT136	-	lysophospholipase esterase
138	 39.48	0	154053..154898	+	281	15604856	ywlC	CT137	-	SuA5 superfamily-related protein
139	 40.72	0	154876..155823	+	315	15604857	-	CT138	-	microsomal dipeptidase
140	 42.78	0	155820..157100	-	426	15604858	oppA_1	CT139	-	oligopeptide binding protein
141	 40.61	0	157277..157963	+	228	15604859	ypdP	CT140	-	hypothetical protein
142	 42.06	0	158147..158593	+	148	15604860	secA_1	CT141	-	protein translocase
143	 41.49	0	158993..159850	+	285	15604861	-	CT142	-	hypothetical protein
144	 39.03	-1	159852..160694	+	280	15604862	-	CT143	-	hypothetical protein
145	 42.66	0	160694..161551	+	285	15604863	-	CT144	-	hypothetical protein
146	 44.66	+1	161737..163581	+	614	15604864	-	CT145	-	Serine/threonine protein kinase
147	 43.42	0	163592..165583	+	663	15604865	ligA	CT146	-	NAD-dependent DNA ligase LigA
148	 41.95	0	165681..170030	+	1449	15604866	-	CT147	-	hypothetical protein
149	 40.09	0	170093..171616	-	507	15604867	mhpA	CT148	-	FAD-dependent monooxygenase
150	 45.36	+1	171816..172763	-	315	15604868	-	CT149	-	hydrolase
151	 34.59	-2	173162..173320	+	52	15604869	rpmG	CT150	-	50S ribosomal protein L33
152	 41.07	0	173356..174867	+	503	15604870	-	CT151	-	hypothetical protein
153	 43.22	0	174874..175551	+	225	15604871	ycfV	CT152	-	ABC transporter ATPase
154	 40.69	0	175702..178134	-	810	15604872	-	CT153	-	MAC/perforin family protein
155	 42.62	0	178320..179471	-	383	15604873	-	CT154	-	phospholipase D endonuclease superfamily protein
156	 42.46	0	179440..180381	-	313	15604874	-	CT155	-	phospholipase D endonuclease superfamily protein
157	 49.71	+2	180261..180602	-	113	15604875	-	CT156	-	hypothetical protein
158	 39.34	0	180738..181952	-	404	15604876	-	CT157	-	phospholipase D endonuclease superfamily protein
159	 44.63	+1	182076..182792	-	238	15604877	-	CT158	-	phospholipase D endonuclease superfamily protein
160	 42.98	0	182735..183667	-	310	15604878	-	CT159	-	hypothetical protein
161	 40.28	0	183813..184316	-	167	15604879	-	CT160	-	hypothetical protein
162	 38.06	-1	184313..185053	-	246	15604880	-	CT161	-	hypothetical protein
163	 43.33	0	185201..185440	-	79	15604881	-	CT162	-	hypothetical protein
164	 38.86	-1	185673..187319	+	548	15604882	-	CT163	-	hypothetical protein
165	 40.23	0	187372..187632	+	86	15604883	-	CT164	-	hypothetical protein
166	 41.61	0	188106..188552	+	148	15604884	-	CT165	-	hypothetical protein
167	 40.36	0	188549..190468	+	639	15604885	-	CT166	-	hypothetical protein
168	 39.56	0	190524..191855	+	443	15604886	-	CT167	-	hypothetical protein
169	 42.57	0	191921..192223	+	100	15604887	-	CT168	-	hypothetical protein
170	 37.19	-1	192279..192563	+	94	15604888	trpR	CT169	-	Trp operon repressor
171	 41.82	0	192912..194090	+	392	15604889	trpB	CT170	-	tryptophan synthase subunit beta
172	 38.45	-1	194083..194844	+	253	15604890	trpA	CT171	-	tryptophan synthase subunit alpha
173	 33.13	-2	195091..195582	-	163	15604891	-	CT172	-	hypothetical protein
174	 35.67	-2	195610..195780	-	56	15604892	-	CT172.1	-	hypothetical protein
175	 35.53	-2	195848..196120	-	90	15604893	-	CT173	-	hypothetical protein
176	 35.75	-2	196207..196662	-	151	15604894	-	CT174	-	hypothetical protein
177	 36.67	-2	196857..198446	+	529	15604895	oppA_2	CT175	-	oligopeptide binding protein permease
178	 37.50	-1	198473..198880	-	135	15604896	dsbB	CT176	-	putative disulfide oxidoreductase
179	 40.03	0	198877..199593	-	238	15604897	dsbG	CT177	-	disulfide bond chaperone
180	 37.37	-1	199739..200953	+	404	15604898	-	CT178	-	hypothetical protein
181	 38.60	-1	200955..201467	-	170	15604899	-	CT179	-	hypothetical protein
182	 40.12	0	201611..202303	-	230	15604900	tauB	CT180	-	nitrate/iron ABC transporter ATPase
183	 39.38	0	202611..203321	-	236	15604901	-	CT181	-	hypothetical protein
184	 42.09	0	203689..204453	+	254	15604902	kdsB	CT182	-	3-deoxy-manno-octulosonate cytidylyltransferase
185	 41.30	0	204429..206048	+	539	15604903	pyrG	CT183	-	CTP synthetase
186	 42.28	0	206035..206481	+	148	15604904	yqgF	CT184	-	Holliday junction resolvase-like protein
187	 39.57	0	206598..208121	+	507	161723223	zwf	CT185	-	glucose-6-phosphate 1-dehydrogenase
188	 41.12	0	208146..208916	+	256	15604906	devB	CT186	-	6-phosphogluconolactonase
189	 40.89	0	208913..209785	-	290	15604907	dnaX_1	CT187	-	DNA polymerase III subunit delta'
190	 41.99	0	209799..210410	-	203	15604908	tdk	CT188	-	thymidylate kinase
191	 41.34	0	210412..212922	-	836	15604909	gyrA_1	CT189	-	DNA gyrase subunit A
192	 40.29	0	212937..215351	-	804	15604910	gyrB	CT190	-	DNA gyrase subunit B
193	 39.03	-1	215354..215704	-	116	15604911	-	CT191	-	hypothetical protein
194	 40.70	0	215851..216624	-	257	15604912	-	CT192	-	hypothetical protein
195	 42.36	0	216651..217769	-	372	15604913	tgt	CT193	-	queuine tRNA-ribosyltransferase
196	 40.76	0	217896..219308	-	470	15604914	mgtE	CT194	-	Mg2+ transporter
197	 43.13	0	219747..220838	-	363	15604915	-	CT195	-	hypothetical protein
198	 38.94	-1	221062..221382	+	106	15604916	-	CT196	-	hypothetical protein
199	 43.17	0	221458..222474	+	338	15604917	gcp_1	CT197	-	O-sialoglycoprotein endopeptidase
200	 40.27	0	222438..223994	+	518	15604918	oppA_3	CT198	-	oligopeptide binding protein
201	 38.22	-1	224153..225094	+	313	15604919	oppB_1	CT199	-	oligopeptide permease
202	 39.01	-1	225126..225971	+	281	15604920	oppC_1	CT200	-	oligopeptide permease
203	 41.97	0	225964..226797	+	277	15604921	oppD	CT201	-	oligopeptide transport ATPase
204	 37.77	-1	226812..227555	+	247	15604922	oppF	CT202	-	oligopeptide transport ATPase
205	 40.21	0	227862..228617	+	251	15604923	-	CT203	-	hypothetical protein
206	 39.90	0	228647..230062	+	471	15604924	ybhI	CT204	-	dicarboxylate translocator
207	 38.63	-1	230082..231743	+	553	15604925	pfkA_1	CT205	-	diphosphate--fructose-6-phosphate 1-phosphotransferase
208	 40.64	0	231752..232600	+	282	15604926	-	CT206	-	acyltransferase family protein
209	 38.62	-1	232582..234228	+	548	15604927	pfkA_2	CT207	-	diphosphate--fructose-6-phosphate 1-phosphotransferase
210	 38.19	-1	234474..235769	-	431	15604928	gseA	CT208	-	3-deoxy-D-manno-octulosonic-acid transferase
211	 42.68	0	235766..238225	-	819	15604929	leuS	CT209	-	leucyl-tRNA synthetase
212	 42.24	0	238422..239690	+	422	15604930	hemL	CT210	-	glutamate-1-semialdehyde aminotransferase
213	 39.82	0	239682..240251	-	189	15604931	-	CT211	-	hypothetical protein
214	 38.70	-1	240271..240717	-	148	15604932	-	CT212	-	hypothetical protein
215	 43.21	0	240707..241435	-	242	15604933	rpiA	CT213	-	ribose-5-phosphate isomerase A
216	 39.54	0	241530..243173	-	547	15604934	-	CT214	-	hypothetical protein
217	 42.50	0	243477..244523	+	348	15604935	dhnA	CT215	-	fructose-bisphosphate aldolase
218	 40.47	0	244537..245937	+	466	15604936	xasA	CT216	-	glutamate/gamma-aminobutyrate antiporter
219	 43.83	0	246091..246795	+	234	15604937	ydaO	CT217	-	PP-loop superfamily ATPase
220	 42.02	0	246926..247777	+	283	15604938	surE	CT218	-	stationary phase survival protein SurE
221	 38.17	-1	247889..248797	+	302	15604939	ubiA	CT219	-	prenyltransferase
222	 39.90	0	248794..249372	+	192	15604940	ubiX	CT220	-	aromatic acid decarboxylase
223	 40.69	0	249369..250265	-	298	15604941	yqfU	CT221	-	hypothetical protein
224	 39.72	0	250554..250694	-	46	15604942	-	CT221.1	-	hypothetical protein
225	 38.46	-1	250721..251110	-	129	15604943	-	CT222	-	hypothetical protein
226	 41.70	0	251252..252064	-	270	15604944	-	CT223	-	hypothetical protein
227	 40.54	0	252455..252898	-	147	15604945	-	CT224	-	hypothetical protein
228	 38.48	-1	252989..253357	-	122	15604946	-	CT225	-	hypothetical protein
229	 39.74	0	253456..253986	-	176	15604947	-	CT226	-	hypothetical protein
230	 39.80	0	254102..254503	-	133	15604948	-	CT227	-	hypothetical protein
231	 40.44	0	254774..255364	-	196	15604949	-	CT228	-	hypothetical protein
232	 42.75	0	255514..256161	-	215	15604950	-	CT229	-	hypothetical protein
233	 42.39	0	256387..257634	+	415	15604951	-	CT230	-	neutral amino acid (glutamate) transporter
234	 40.39	0	257818..259290	+	490	15604952	-	CT231	-	sodium-dependent amino acid transporter
235	 41.95	0	259395..259742	+	115	15604953	incB	CT232	-	inclusion membrane protein B
236	 45.25	+1	259819..260355	+	178	15604954	incC	CT233	-	inclusion membrane protein C
41.53	MEAN

2.32	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.