IslandPathversion 1.0

IslandPath Analysis: Chlamydophila pneumoniae TW-183



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.62 STD DEV: 3.18
Chlamydophila pneumoniae TW-183, complete genome - 1..1225935
1113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
929	 41.95	0	1030610..1031863	+	417	33242264	murD	CpB0933	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
930	 43.87	+1	1031866..1032567	+	233	33242265	lytE	CpB0934	-	cell wall hydrolase
931	 43.26	0	1032586..1033743	+	385	33242266	-	CpB0935	-	stage V sporulation protein E
932	 42.76	0	1033652..1034722	+	356	33242267	murG	CpB0936	-	N-acetylglucosaminyl transferase
933	 40.99	0	1034732..1037161	+	809	33242268	-	CpB0937	-	UDP-N-acetylmuramate--alanine ligase
934	 35.41	-1	1037235..1037813	-	192	33242269	-	CpB0938	-	hypothetical protein
935	 42.48	0	1037765..1038103	-	112	33242270	cutA1	CpB0939	-	divalent cation tolerance protein
936	 37.53	0	1038100..1038885	-	261	33242271	-	CpB0940	-	hypothetical protein
937	 37.64	0	1038945..1039292	+	115	33242272	-	CpB0941	-	sigma-F 5-region regulatory protein SpoIIAA
938	 38.87	0	1039302..1040330	+	342	33242273	miaA	CpB0943	-	tRNA delta(2)-isopentenylpyrophosphate transferase
939	 42.00	0	1040305..1041366	-	353	33242274	-	CpB0942	-	hypothetical protein
940	 38.21	0	1041452..1043113	+	553	33242275	-	CpB0944	-	hypothetical protein
941	 35.98	-1	1043110..1043298	+	62	33242276	-	CpB0945	-	hypothetical protein
942	 39.30	0	1043349..1043750	+	133	33242277	-	CpB0946	-	hypothetical protein
943	 35.56	-1	1043811..1044170	+	119	33242278	-	CpB0947	-	Iojap
944	 44.36	+1	1044187..1045437	+	416	33242279	-	CpB0948	-	3-oxoacyl-(acyl carrier protein) synthase II
945	 36.87	-1	1045440..1045892	+	150	33242280	-	CpB0949	-	diadenosine tetraphosphatase
946	 39.20	0	1045926..1046573	-	215	33242281	-	CpB0950	-	inorganic pyrophosphatase
947	 42.71	0	1046728..1047783	+	351	33242282	-	CpB0951	-	leucine dehydrogenase
948	 41.72	0	1047778..1048755	-	325	33242283	-	CpB0952	-	bisphosphonucleoside 3(2')-phosphohydrolase-like protein
949	 39.90	0	1048885..1049646	+	253	33242284	-	CpB0953	-	2-acylglycerophosphoethanolamine acyl transferase/acyl carrier
950	 41.25	0	1049664..1051280	+	538	33242285	-	CpB0954	-	long chain fatty acid--[acyl-carrier-protein] ligase
951	 40.79	0	1051334..1052446	+	370	33242286	-	CpB0956	-	8-amino-7-oxononanoate synthase
952	 42.89	0	1052375..1054624	-	749	33242287	priA	CpB0955	-	primosome assembly protein PriA
953	 38.35	0	1054573..1055250	-	225	33242288	-	CpB0957	-	hypothetical protein
954	 41.92	0	1055410..1055910	+	166	33242289	-	CpB0958	-	putative thioredoxin disulfide isomerase
955	 42.17	0	1056017..1057159	-	380	33242290	-	CpB0959	-	hypothetical protein
956	 41.69	0	1057231..1058331	-	366	33242291	-	CpB0960	-	hypothetical protein
957	 41.26	0	1058533..1059642	-	369	33242292	-	CpB0961	-	hypothetical protein
958	 35.95	-1	1059728..1059880	+	50	33242293	-	CpB0962	-	hypothetical protein
959	 43.76	0	1060243..1060683	+	146	33242294	-	CpB0963	-	hypothetical protein
960	 38.89	0	1060719..1060898	-	59	33242295	-	CpB0964	-	hypothetical protein
961	 41.04	0	1061488..1063071	+	527	33242296	lysS	CpB0965	-	lysyl-tRNA synthetase
962	 42.32	0	1063068..1064492	-	474	33242297	cysS	CpB0966	-	cysteinyl-tRNA synthetase
963	 42.02	0	1064885..1065931	+	348	33242298	-	CpB0968	-	putative disulfide bond isomerase
964	 44.29	+1	1065873..1066292	-	139	33242299	rnpA	CpB0967	-	ribonuclease P
965	 46.38	+1	1066304..1066441	-	45	33242300	rpmH	CpB0969	-	50S ribosomal protein L34
966	 39.86	0	1066686..1066823	+	45	33242301	rpmJ	CpB0970	-	50S ribosomal protein L36
967	 39.54	0	1066846..1067151	+	101	33242302	rpsN	CpB0971	-	30S ribosomal protein S14
968	 36.06	-1	1067196..1067672	-	158	33242303	-	CpB0972	-	hypothetical protein
969	 38.00	0	1068078..1068548	+	156	33242304	-	CpB0973	-	hypothetical protein
970	 41.50	0	1068551..1070362	-	603	33242305	uvrC	CpB0974	-	excinuclease ABC subunit C
971	 41.94	0	1070365..1072851	-	828	33242306	mutS	CpB0975	-	DNA mismatch repair protein
972	 41.36	0	1072944..1073105	-	53	33242307	-	CpB0976	-	hypothetical protein
973	 40.27	0	1073335..1075107	+	590	33242308	dnaG	CpB0977	-	DNA primase
974	 40.15	0	1075328..1075591	+	87	33242309	-	CpB0978	-	hypothetical protein
975	 43.35	0	1075862..1076350	+	162	33242310	-	CpB0979	-	hypothetical protein
976	 43.10	0	1076420..1077013	+	197	33242311	-	CpB0980	-	hypothetical protein
977	 41.21	0	1077092..1080124	-	1010	33242312	-	CpB0981	-	glycyl-tRNA synthetase
978	 36.92	-1	1080167..1080361	-	64	33242313	-	CpB0982	-	hypothetical protein
979	 39.45	0	1080792..1081412	+	206	33242314	-	CpB0984	-	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
980	 40.95	0	1081394..1082824	-	476	33242315	glgA	CpB0983	-	glycogen synthase
981	 35.94	-1	1083045..1083236	+	63	33242316	-	CpB0985	-	hypothetical protein
982	 38.71	0	1083279..1083836	+	185	33242317	-	CpB0986	-	50S ribosomal protein L25/general stress protein Ctc
983	 41.80	0	1083838..1084380	+	180	33242318	-	CpB0987	-	peptidyl-tRNA hydrolase
984	 37.46	0	1084472..1084810	+	112	33242319	rpsF	CpB0988	-	30S ribosomal protein S6
985	 36.14	-1	1084828..1085076	+	82	33242320	rpsR	CpB0989	-	30S ribosomal protein S18
986	 38.82	0	1085092..1085601	+	169	33242321	rplI	CpB0990	-	50S ribosomal protein L9
987	 39.91	0	1085636..1086061	+	141	33242322	-	CpB0991	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
988	 39.24	0	1086004..1086528	+	174	33242323	-	CpB0992	-	putative kinase
989	 40.95	0	1086910..1088262	+	450	33242324	-	CpB0993	-	hypothetical protein
990	 40.76	0	1088310..1091138	-	942	33242325	-	CpB0994	-	protein-degrading enzyme
991	 37.75	0	1091140..1092135	-	331	33242326	-	CpB0995	-	glycerol-3-phosphate acyltransferase
992	 38.31	0	1092146..1093693	-	515	33242327	-	CpB0996	-	cytosolic axial filament protein cafA and ribonuclease E
993	 41.13	0	1093994..1094455	+	153	33242328	-	CpB0997	-	hypothetical protein
994	 40.98	0	1094468..1094650	+	60	33242329	rpmF	CpB0998	-	50S ribosomal protein L32
995	 42.89	0	1094666..1095628	+	320	33242330	-	CpB0999	-	putative glycerol-3-phosphate acyltransferase PlsX
996	 39.71	0	1095814..1100577	+	1587	33242331	-	CpB1000	-	outer membrane protein 11
997	 40.76	0	1100648..1102102	-	484	33242332	-	CpB1001	-	hypothetical protein
998	 41.10	0	1102272..1104086	-	604	33242333	lpxB	CpB1002	-	lipid-A-disaccharide synthase
999	 37.41	-1	1104095..1105345	-	416	33242334	-	CpB1003	-	poly(A) polymerase
1000	 42.41	0	1105862..1107238	+	458	33242335	-	CpB1004	-	phosphohexosemutase
1001	 41.42	0	1107245..1109074	+	609	33242336	-	CpB1005	-	D-fructose-6-phosphate amidotransferase
1002	 40.13	0	1109162..1110352	+	396	33242337	-	CpB1006	-	tyrosine-specific transport protein
1003	 41.14	0	1110403..1111119	+	238	33242338	-	CpB1007	-	putative transport permease
1004	 41.26	0	1111128..1112060	-	310	33242339	-	CpB1008	-	ftsY cell division protein
1005	 43.93	+1	1112071..1113231	+	386	33242340	sucC	CpB1009	-	succinyl-CoA synthetase subunit beta
1006	 48.41	+2	1113245..1114126	+	293	33242341	-	CpB1010	-	succinyl-CoA synthetase subunit alpha
1007	 36.84	-1	1114378..1114548	+	56	33242342	-	CpB1011	-	hypothetical protein
1008	 42.96	0	1114937..1115341	+	134	33242343	-	CpB1012	-	hypothetical protein
1009	 40.29	0	1115783..1116889	+	368	33242344	-	CpB1013	-	hypothetical protein
1010	 39.90	0	1117072..1118106	+	344	33242345	-	CpB1014	-	hypothetical protein
1011	 39.15	0	1118366..1119397	+	343	33242346	-	CpB1015	-	hypothetical protein
1012	 42.36	0	1119696..1121147	+	483	33242347	htrA	CpB1016	-	serine protease DO
1013	 41.63	0	1121202..1122683	-	493	33242348	-	CpB1017	-	hypothetical protein
1014	 41.68	0	1122732..1125656	+	974	33242349	-	CpB1018	-	putative zinc metalloproteinase
1015	 40.13	0	1125660..1126895	-	411	33242350	-	CpB1019	-	hypothetical protein
1016	 40.98	0	1126904..1127701	-	265	33242351	-	CpB1020	-	CDP-diacylglycerol-serine O-phosphatidyltransferase
1017	 40.93	0	1128080..1131214	+	1044	33242352	-	CpB1021	-	ribonucleotide-diphosphate reductase subunit alpha
1018	 37.80	0	1131178..1132275	+	365	33242353	-	CpB1022	-	ribonucleotide-diphosphate reductase subunit beta
1019	 39.56	0	1132425..1133099	+	224	33242354	trmB	CpB1023	-	tRNA (guanine-N(7))-methyltransferase
1020	 42.45	0	1133217..1133819	+	200	33242355	-	CpB1025	-	putative rRNA methylase
1021	 44.26	+1	1133773..1134669	-	298	33242356	murB	CpB1024	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1022	 35.61	-1	1134714..1135109	-	131	33242357	nusB	CpB1026	-	transcription antitermination protein NusB
1023	 38.17	0	1135494..1135679	-	61	33242358	-	CpB1027	-	hypothetical protein
1024	 37.91	0	1135687..1136145	+	152	33242359	infC	CpB1028	-	translation initiation factor IF-3
1025	 38.46	0	1136123..1136317	+	64	33242360	rpmI	CpB1029	-	50S ribosomal protein L35
1026	 41.80	0	1136336..1136701	+	121	33242361	rplT	CpB1030	-	50S ribosomal protein L20
1027	 39.61	0	1136716..1137735	+	339	33242362	pheS	CpB1031	-	phenylalanyl-tRNA synthetase subunit alpha
1028	 37.88	0	1138100..1140145	+	681	33242363	-	CpB1033	-	hypothetical protein
40.62	MEAN

3.18	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.