IslandPathversion 1.0

IslandPath Analysis: Chlamydophila pneumoniae TW-183



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.62 STD DEV: 3.18
Chlamydophila pneumoniae TW-183, complete genome - 1..1225935
1113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
840	 43.97	+1	920684..922948	+	754	33242175	-	CpB0844	-	general secretion pathway protein D precursor
841	 45.34	+1	922938..924428	+	496	33242176	xcpR	CpB0845	-	XcpR
842	 43.96	+1	924438..925613	+	391	33242177	-	CpB0846	-	XcpS
843	 39.25	0	925637..926008	+	123	33242178	-	CpB0847	-	general secretion pathway protein g precursor
844	 43.18	0	926012..926458	+	148	33242179	-	CpB0848	-	hypothetical protein
845	 39.59	0	926443..926985	+	180	33242180	-	CpB0849	-	hypothetical protein
846	 42.30	0	926969..927994	+	341	33242181	-	CpB0850	-	hypothetical protein
847	 38.64	0	928028..928555	+	175	33242182	-	CpB0851	-	hypothetical protein
848	 42.76	0	928821..929690	-	289	33242183	-	CpB0852	-	YOP proteins translocation protein T
849	 38.54	0	929698..929985	-	95	33242184	-	CpB0853	-	translocation protein S
850	 42.02	0	929997..930917	-	306	33242185	yscR	CpB0854	-	type III secretion system protein
851	 38.89	0	930932..931633	-	233	33242186	-	CpB0855	-	type III secretion system protein
852	 39.57	0	931754..932587	-	277	33242187	-	CpB0856	-	hypothetical protein
853	 43.06	0	932587..933594	-	335	33242188	-	CpB0857	-	secretion protein
854	 37.63	0	934067..934624	+	185	33242189	-	CpB0858	-	hypothetical protein
855	 35.45	-1	934767..935285	+	172	33242190	-	CpB0859	-	hypothetical protein
856	 40.35	0	935590..935760	+	56	33242191	-	CpB0860	-	hypothetical protein
857	 45.67	+1	936147..937070	-	307	33242192	-	CpB0861	-	lipoyl synthase
858	 44.01	+1	937067..938452	-	461	33242193	-	CpB0862	-	dihydrolipoamide dehydrogenase
859	 45.16	+1	938876..939340	+	154	33242194	-	CpB0863	-	hypothetical protein
860	 40.84	0	939365..943012	-	1215	33242195	-	CpB0864	-	SNF protein
861	 39.55	0	943042..944280	-	412	33242196	brnQ	CpB0865	-	branched-chain amino acid transporter
862	 42.22	0	944465..945094	-	209	33242197	-	CpB0866	-	endonuclease III
863	 43.49	0	945101..946429	-	442	33242198	trmE	CpB0867	-	tRNA modification GTPase TrmE
864	 39.96	0	946580..947485	+	301	33242199	-	CpB0868	-	phosphatidylserine decarboxylase
865	 42.76	0	947545..948870	+	441	33242200	-	CpB0869	-	hypothetical protein
866	 41.74	0	949054..951966	+	970	33242201	secA	CpB0870	-	preprotein translocase subunit SecA
867	 39.90	0	952136..952333	+	65	33242202	-	CpB0872	-	hypothetical protein
868	 38.31	0	952314..952514	-	66	33242203	-	CpB0871	-	hypothetical protein
869	 39.07	0	952590..954053	-	487	33242204	engA	CpB0873	-	GTP-binding protein EngA
870	 42.01	0	954170..955402	-	410	33242205	-	CpB0874	-	poly(A) polymerase
871	 40.28	0	955432..956697	-	421	33242206	clpX	CpB0875	-	ATP-dependent protease ATP-binding subunit
872	 45.10	+1	956707..957318	-	203	33242207	clpP	CpB0876	-	ATP-dependent Clp protease proteolytic subunit
873	 39.20	0	957497..958825	-	442	33242208	tig	CpB0877	-	trigger factor
874	 40.59	0	959111..962611	+	1166	33242209	-	CpB0878	-	swf/snf helicase
875	 43.14	0	962616..963716	+	366	33242210	-	CpB0879	-	rod shape-determining protein
876	 43.76	0	963719..965521	+	600	33242211	-	CpB0880	-	phosphoenolpyruvate carboxykinase
877	 40.42	0	965639..967939	+	766	33242212	-	CpB0881	-	hypothetical protein
878	 40.77	0	967960..969129	+	389	33242213	-	CpB0882	-	hypothetical protein
879	 43.30	0	969126..970148	-	340	33242214	-	CpB0883	-	major outer membrane protein
880	 45.27	+1	970314..971318	-	334	33242215	gpsA	CpB0884	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
881	 41.99	0	971315..972700	-	461	33242216	-	CpB0885	-	UDP-N-acetylglucosamine pyrophosphorylase
882	 31.98	-2	972712..973080	-	122	33242217	-	CpB0886	-	hypothetical protein
883	 44.55	+1	973077..974378	-	433	33242218	-	CpB0887	-	type III secretion system ATPase
884	 43.39	0	974375..974911	-	178	33242219	-	CpB0888	-	hypothetical protein
885	 38.79	0	974928..975953	-	341	33242220	-	CpB0889	-	type III secretion system protein
886	 43.07	0	976245..977045	-	266	33242221	-	CpB0890	-	NifU-like protein
887	 43.98	+1	977042..978196	-	384	33242222	nifS	CpB0891	-	nitrogen fixation protein
888	 39.30	0	978151..978837	-	228	33242223	-	CpB0892	-	phosphoglyceromutase
889	 42.66	0	978993..979700	+	235	33242224	-	CpB0893	-	putative pseudouridine synthase
890	 42.42	0	979741..980268	+	175	33242225	-	CpB0895	-	hypothetical protein
891	 41.62	0	980236..980814	-	192	33242226	birA	CpB0894	-	biotin--protein ligase
892	 41.35	0	980746..981993	+	415	33242227	-	CpB0896	-	stage V sporulation protein E
893	 42.08	0	981990..983966	-	658	33242228	copA	CpB0897	-	copper-transporting ATPase
894	 39.36	0	983978..984724	-	248	33242229	-	CpB0898	-	hypothetical protein
895	 42.37	0	984768..986051	-	427	33242230	-	CpB0899	-	seryl-tRNA synthetase
896	 45.62	+1	986095..987225	+	376	33242231	-	CpB0900	-	riboflavin-specific deaminase
897	 42.80	0	987286..988542	+	418	33242232	-	CpB0901	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
898	 42.32	0	988565..989020	+	151	33242233	ribH	CpB0902	-	riboflavin synthase subunit beta
899	 42.22	0	989069..990430	-	453	33242234	-	CpB0903	-	hypothetical protein
900	 42.35	0	990695..991348	+	217	33242235	-	CpB0904	-	hypothetical protein
901	 43.86	+1	991467..992843	+	458	33242236	-	CpB0905	-	D-alanine/glycine transport protein, sodium-dependent
902	 44.59	+1	992856..993308	+	150	33242237	-	CpB0906	-	hypothetical protein
903	 41.74	0	993312..993977	-	221	33242238	-	CpB0907	-	SET domain-containing protein
904	 39.47	0	993965..994762	-	265	33242239	-	CpB0908	-	putative metal dependent hydrolase
905	 39.07	0	994764..997184	-	806	33242240	-	CpB0909	-	DNA translocase SpoIIIE
906	 42.19	0	1003107..1003535	+	142	33242241	-	CpB0910	-	hypothetical protein
907	 41.93	0	1003591..1004730	+	379	33242242	-	CpB0911	-	hypothetical protein
908	 40.35	0	1004893..1006188	-	431	33242243	-	CpB0912	-	Na(+)-translocating NADH-quinone reductase subunit F
909	 38.42	0	1006329..1006682	-	117	33242244	yajC	CpB0913	-	preprotein translocase subunit YajC
910	 40.71	0	1006753..1007958	-	401	33242245	-	CpB0914	-	protein Hom1
911	 32.72	-2	1008045..1008206	+	53	33242246	-	CpB0915	-	hypothetical protein
912	 38.26	0	1008228..1008572	-	114	33242247	-	CpB0916	-	histone H1-like protein
913	 31.96	-2	1008777..1008995	+	72	33242248	-	CpB0917	-	hypothetical protein
914	 42.00	0	1009015..1011483	+	822	33242249	-	CpB0919	-	putative chltr phosphoprotein
915	 43.73	0	1011439..1012746	-	435	33242250	-	CpB0918	-	protoporphyrinogen oxidase
916	 40.38	0	1012782..1014158	-	458	33242251	-	CpB0920	-	coproporphyrinogen III oxidase
917	 40.30	0	1014139..1015128	-	329	33242252	hemE	CpB0921	-	uroporphyrinogen decarboxylase
918	 41.31	0	1015139..1018396	-	1085	33242253	-	CpB0922	-	transcription-repair coupling factor
919	 42.42	0	1018366..1020984	-	872	33242254	alaS	CpB0923	-	alanyl-tRNA synthetase
920	 42.59	0	1021163..1023214	+	683	33242255	-	CpB0924	-	transketolase
921	 41.61	0	1023208..1024089	-	293	33242256	-	CpB0925	-	AMP nucleosidase
922	 42.58	0	1024311..1024883	+	190	33242257	-	CpB0926	-	elongation factor P
923	 38.53	0	1024918..1025148	+	76	33242258	-	CpB0927	-	hypothetical protein
924	 41.89	0	1025173..1026060	-	295	33242259	cpdA	CpB0928	-	3,5'-cyclic-nucleotide phosphodiesterase
925	 40.32	0	1026224..1027783	-	519	33242260	-	CpB0929	-	chaperonin HSP60
926	 34.72	-1	1027937..1028152	+	71	33242261	-	CpB0930	-	hypothetical protein
927	 41.89	0	1028198..1029541	+	447	33242262	-	CpB0931	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase
928	 42.48	0	1029558..1030607	+	349	33242263	mraY	CpB0932	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
929	 41.95	0	1030610..1031863	+	417	33242264	murD	CpB0933	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
930	 43.87	+1	1031866..1032567	+	233	33242265	lytE	CpB0934	-	cell wall hydrolase
931	 43.26	0	1032586..1033743	+	385	33242266	-	CpB0935	-	stage V sporulation protein E
932	 42.76	0	1033652..1034722	+	356	33242267	murG	CpB0936	-	N-acetylglucosaminyl transferase
933	 40.99	0	1034732..1037161	+	809	33242268	-	CpB0937	-	UDP-N-acetylmuramate--alanine ligase
934	 35.41	-1	1037235..1037813	-	192	33242269	-	CpB0938	-	hypothetical protein
935	 42.48	0	1037765..1038103	-	112	33242270	cutA1	CpB0939	-	divalent cation tolerance protein
936	 37.53	0	1038100..1038885	-	261	33242271	-	CpB0940	-	hypothetical protein
937	 37.64	0	1038945..1039292	+	115	33242272	-	CpB0941	-	sigma-F 5-region regulatory protein SpoIIAA
938	 38.87	0	1039302..1040330	+	342	33242273	miaA	CpB0943	-	tRNA delta(2)-isopentenylpyrophosphate transferase
939	 42.00	0	1040305..1041366	-	353	33242274	-	CpB0942	-	hypothetical protein
40.62	MEAN

3.18	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.