IslandPath Analysis: Chlamydophila pneumoniae TW-183



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.62   STD DEV: 3.18
Chlamydophila pneumoniae TW-183, complete genome - 1..1225935
1113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
796	 40.16	0	867788..869707	-	639	33242131	-	CpB0800	-	hypothetical protein
797	 41.91	0	869810..870520	+	236	33242132	-	CpB0801	-	uracil-DNA glycosylase
798	 46.34	+1	870505..870750	+	81	33242133	-	CpB0803	-	hypothetical protein
799	 41.38	0	870733..871353	-	206	33242134	-	CpB0802	-	putative deoxyribonucleotide triphosphate pyrophosphatase
800	 41.88	0	871538..872812	+	424	33242135	-	CpB0804	-	hypothetical protein
801	 43.01	0	872923..874503	+	526	33242136	groEL	CpB0805	-	chaperonin GroEL
802	 40.78	0	874827..875417	+	196	33242137	-	CpB0806	-	2-cys peroxiredoxin BAS1 precursor
803	 35.38	-1	875414..875803	-	129	33242138	-	CpB0807	-	hypothetical protein
804	 38.67	0	875910..876527	-	205	33242139	-	CpB0808	-	protein p60 precursor
805	 41.45	0	876517..877095	-	192	33242140	-	CpB0809	-	peptidoglycan-associated lipoprotein precursor
806	 42.21	0	877092..878387	-	431	33242141	tolB	CpB0810	-	translocation protein TolB
807	 41.44	0	878419..879207	-	262	33242142	-	CpB0811	-	hypothetical protein
808	 42.89	0	879211..879618	-	135	33242143	exbD	CpB0812	-	hypothetical protein
809	 40.34	0	879615..880313	-	232	33242144	exbB	CpB0813	-	ExbB
810	 43.68	0	880474..882618	+	714	33242145	dsbD	CpB0814	-	thiol:disulfide interchange protein
811	 43.89	+1	882941..883726	+	261	33242146	mttC	CpB0815	-	MttC
812	 41.95	0	883864..884757	+	297	33242147	-	CpB0816	-	succinate dehydrogenase subunit C
813	 44.28	+1	884761..886641	+	626	33242148	sdhA	CpB0817	-	succinate dehydrogenase flavoprotein subunit
814	 42.76	0	886655..887428	+	257	33242149	sdhB	CpB0818	-	succinate dehydrogenase iron-sulfur subunit
815	 42.26	0	887430..890396	-	988	33242150	-	CpB0819	-	hypothetical protein
816	 40.72	0	890427..892241	-	604	33242151	-	CpB0820	-	hypothetical protein
817	 40.62	0	892238..894145	-	635	33242152	rsbU	CpB0821	-	hypothetical protein
818	 34.64	-1	894151..894303	-	50	33242153	-	CpB0822	-	hypothetical protein
819	 43.88	+1	894496..895329	+	277	33242154	-	CpB0823	-	hypothetical protein
820	 42.48	0	895450..896520	+	356	33242155	-	CpB0824	-	hypothetical protein
821	 42.88	0	896623..898665	+	680	33242156	-	CpB0825	-	hypothetical protein
822	 44.94	+1	898874..900019	+	381	33242157	-	CpB0826	-	hypothetical protein
823	 42.60	0	900168..901181	+	337	33242158	-	CpB0827	-	hypothetical protein
824	 42.29	0	901259..902308	-	349	33242159	-	CpB0828	-	hypothetical protein
825	 42.97	0	902568..903854	-	428	33242160	eno	CpB0829	-	phosphopyruvate hydratase
826	 43.77	0	904046..906019	-	657	33242161	-	CpB0830	-	excinuclease ABC subunit B
827	 42.90	0	906028..907062	-	344	33242162	-	CpB0831	-	tryptophanyl-tRNA synthetase
828	 36.04	-1	907071..907625	-	184	33242163	-	CpB0832	-	hypothetical protein
829	 40.64	0	907629..908381	-	250	33242164	-	CpB0833	-	plasmid virulence protein pGP6-D
830	 42.19	0	908386..909153	-	255	33242165	soj	CpB0834	-	Spo0A activation inhibitor
831	 42.09	0	909186..911093	-	635	33242166	thrS	CpB0835	-	threonyl-tRNA synthetase
832	 41.72	0	911287..912204	+	305	33242167	-	CpB0836	-	hypothetical protein
833	 45.47	+1	912275..913609	-	444	33242168	-	CpB0837	-	hypothetical protein
834	 46.28	+1	913642..915108	-	488	33242169	-	CpB0838	-	hypothetical protein
835	 40.22	0	915145..915507	-	120	33242170	-	CpB0839	-	hypothetical protein
836	 40.80	0	915528..916223	-	231	33242171	lcrH	CpB0840	-	LcrH
837	 42.86	0	916446..918188	+	580	33242172	mutL	CpB0841	-	DNA mismatch repair protein
838	 44.29	+1	918193..919260	+	355	33242173	-	CpB0842	-	X-Pro aminopeptidase
839	 46.71	+1	919406..920683	+	425	33242174	-	CpB0843	-	hypothetical protein
840	 43.97	+1	920684..922948	+	754	33242175	-	CpB0844	-	general secretion pathway protein D precursor
841	 45.34	+1	922938..924428	+	496	33242176	xcpR	CpB0845	-	XcpR
842	 43.96	+1	924438..925613	+	391	33242177	-	CpB0846	-	XcpS
843	 39.25	0	925637..926008	+	123	33242178	-	CpB0847	-	general secretion pathway protein g precursor
844	 43.18	0	926012..926458	+	148	33242179	-	CpB0848	-	hypothetical protein
845	 39.59	0	926443..926985	+	180	33242180	-	CpB0849	-	hypothetical protein
846	 42.30	0	926969..927994	+	341	33242181	-	CpB0850	-	hypothetical protein
847	 38.64	0	928028..928555	+	175	33242182	-	CpB0851	-	hypothetical protein
848	 42.76	0	928821..929690	-	289	33242183	-	CpB0852	-	YOP proteins translocation protein T
849	 38.54	0	929698..929985	-	95	33242184	-	CpB0853	-	translocation protein S
850	 42.02	0	929997..930917	-	306	33242185	yscR	CpB0854	-	type III secretion system protein
851	 38.89	0	930932..931633	-	233	33242186	-	CpB0855	-	type III secretion system protein
852	 39.57	0	931754..932587	-	277	33242187	-	CpB0856	-	hypothetical protein
853	 43.06	0	932587..933594	-	335	33242188	-	CpB0857	-	secretion protein
854	 37.63	0	934067..934624	+	185	33242189	-	CpB0858	-	hypothetical protein
855	 35.45	-1	934767..935285	+	172	33242190	-	CpB0859	-	hypothetical protein
856	 40.35	0	935590..935760	+	56	33242191	-	CpB0860	-	hypothetical protein
857	 45.67	+1	936147..937070	-	307	33242192	-	CpB0861	-	lipoyl synthase
858	 44.01	+1	937067..938452	-	461	33242193	-	CpB0862	-	dihydrolipoamide dehydrogenase
859	 45.16	+1	938876..939340	+	154	33242194	-	CpB0863	-	hypothetical protein
860	 40.84	0	939365..943012	-	1215	33242195	-	CpB0864	-	SNF protein
861	 39.55	0	943042..944280	-	412	33242196	brnQ	CpB0865	-	branched-chain amino acid transporter
862	 42.22	0	944465..945094	-	209	33242197	-	CpB0866	-	endonuclease III
863	 43.49	0	945101..946429	-	442	33242198	trmE	CpB0867	-	tRNA modification GTPase TrmE
864	 39.96	0	946580..947485	+	301	33242199	-	CpB0868	-	phosphatidylserine decarboxylase
865	 42.76	0	947545..948870	+	441	33242200	-	CpB0869	-	hypothetical protein
866	 41.74	0	949054..951966	+	970	33242201	secA	CpB0870	-	preprotein translocase subunit SecA
867	 39.90	0	952136..952333	+	65	33242202	-	CpB0872	-	hypothetical protein
868	 38.31	0	952314..952514	-	66	33242203	-	CpB0871	-	hypothetical protein
869	 39.07	0	952590..954053	-	487	33242204	engA	CpB0873	-	GTP-binding protein EngA
870	 42.01	0	954170..955402	-	410	33242205	-	CpB0874	-	poly(A) polymerase
871	 40.28	0	955432..956697	-	421	33242206	clpX	CpB0875	-	ATP-dependent protease ATP-binding subunit
872	 45.10	+1	956707..957318	-	203	33242207	clpP	CpB0876	-	ATP-dependent Clp protease proteolytic subunit
873	 39.20	0	957497..958825	-	442	33242208	tig	CpB0877	-	trigger factor
874	 40.59	0	959111..962611	+	1166	33242209	-	CpB0878	-	swf/snf helicase
875	 43.14	0	962616..963716	+	366	33242210	-	CpB0879	-	rod shape-determining protein
876	 43.76	0	963719..965521	+	600	33242211	-	CpB0880	-	phosphoenolpyruvate carboxykinase
877	 40.42	0	965639..967939	+	766	33242212	-	CpB0881	-	hypothetical protein
878	 40.77	0	967960..969129	+	389	33242213	-	CpB0882	-	hypothetical protein
879	 43.30	0	969126..970148	-	340	33242214	-	CpB0883	-	major outer membrane protein
880	 45.27	+1	970314..971318	-	334	33242215	gpsA	CpB0884	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
881	 41.99	0	971315..972700	-	461	33242216	-	CpB0885	-	UDP-N-acetylglucosamine pyrophosphorylase
882	 31.98	-2	972712..973080	-	122	33242217	-	CpB0886	-	hypothetical protein
883	 44.55	+1	973077..974378	-	433	33242218	-	CpB0887	-	type III secretion system ATPase
884	 43.39	0	974375..974911	-	178	33242219	-	CpB0888	-	hypothetical protein
885	 38.79	0	974928..975953	-	341	33242220	-	CpB0889	-	type III secretion system protein
886	 43.07	0	976245..977045	-	266	33242221	-	CpB0890	-	NifU-like protein
887	 43.98	+1	977042..978196	-	384	33242222	nifS	CpB0891	-	nitrogen fixation protein
888	 39.30	0	978151..978837	-	228	33242223	-	CpB0892	-	phosphoglyceromutase
889	 42.66	0	978993..979700	+	235	33242224	-	CpB0893	-	putative pseudouridine synthase
890	 42.42	0	979741..980268	+	175	33242225	-	CpB0895	-	hypothetical protein
891	 41.62	0	980236..980814	-	192	33242226	birA	CpB0894	-	biotin--protein ligase
892	 41.35	0	980746..981993	+	415	33242227	-	CpB0896	-	stage V sporulation protein E
893	 42.08	0	981990..983966	-	658	33242228	copA	CpB0897	-	copper-transporting ATPase
894	 39.36	0	983978..984724	-	248	33242229	-	CpB0898	-	hypothetical protein
895	 42.37	0	984768..986051	-	427	33242230	-	CpB0899	-	seryl-tRNA synthetase
40.62	MEAN

3.18	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.