IslandPathversion 1.0

IslandPath Analysis: Chlamydophila pneumoniae TW-183



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.62 STD DEV: 3.18
Chlamydophila pneumoniae TW-183, complete genome - 1..1225935
1113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
710	 40.37	0	765886..766539	+	217	33242045	-	CpB0714	-	hypothetical protein
711	 40.16	0	766848..767462	+	204	33242046	-	CpB0715	-	hypothetical protein
712	 42.51	0	767506..768726	-	406	33242047	-	CpB0716	-	putative NifS-related protein
713	 41.47	0	768755..770020	-	421	33242048	-	CpB0717	-	putative ABC transporter membrane protein
714	 41.12	0	770004..770774	-	256	33242049	-	CpB0718	-	ABC transporter ATPase
715	 41.92	0	770780..772234	-	484	33242050	-	CpB0719	-	cysteine desulfurase activator complex subunit SufB
716	 40.59	0	772559..773578	-	339	33242051	-	CpB0720	-	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
717	 40.67	0	773649..776921	-	1090	33242052	-	CpB0721	-	penicillin-binding protein 2
718	 42.82	0	777538..778707	+	389	33242053	-	CpB0722	-	major outer membrane protein
719	 38.13	0	779091..779924	+	277	33242054	rpsB	CpB0723	-	30S ribosomal protein S2
720	 39.81	0	779924..780772	+	282	33242055	tsf	CpB0724	-	elongation factor Ts
721	 39.89	0	780780..781526	+	248	33242056	pyrH	CpB0725	-	uridylate kinase
722	 38.86	0	781504..782046	+	180	33242057	frr	CpB0726	-	ribosome recycling factor
723	 40.50	0	782419..782934	+	171	33242058	-	CpB0727	-	hypothetical protein
724	 37.79	0	782921..783997	+	358	33242059	-	CpB0728	-	ATP:guanido phosphotransferase
725	 41.41	0	784248..787007	-	919	33242060	-	CpB0729	-	outer membrane secretion protein Q
726	 40.29	0	787004..788512	-	502	33242061	-	CpB0730	-	serine/threonine-protein kinase
727	 42.11	0	788528..789643	-	371	33242062	fliN	CpB0731	-	type III secretion system protein
728	 37.60	0	789653..790495	-	280	33242063	-	CpB0732	-	hypothetical protein
729	 39.25	0	790499..791005	-	168	33242064	-	CpB0733	-	hypothetical protein
730	 45.82	+1	791023..792351	-	442	33242065	yopN	CpB0734	-	type III secretion system ATPase
731	 42.22	0	792353..793027	-	224	33242066	-	CpB0735	-	hypothetical protein
732	 38.89	0	793061..793510	-	149	33242067	-	CpB0736	-	hypothetical protein
733	 39.61	0	793529..793783	-	84	33242068	-	CpB0737	-	hypothetical protein
734	 35.76	-1	793805..794092	-	95	33242069	-	CpB0738	-	hypothetical protein
735	 40.07	0	794100..796622	-	840	33242070	-	CpB0739	-	forkhead domain-containing protein
736	 39.71	0	796636..797043	-	135	33242071	-	CpB0740	-	hypothetical protein
737	 39.41	0	797395..798414	-	339	33242072	hemA	CpB0741	-	glutamyl-tRNA reductase
738	 40.18	0	798694..798912	-	72	33242073	-	CpB0742	-	hypothetical protein
739	 38.09	0	798964..800772	+	602	33242074	-	CpB0743	-	DNA topoisomerase IV subunit B
740	 40.99	0	800776..802212	+	478	33242075	-	CpB0744	-	DNA topoisomerase IV subunit A
741	 41.67	0	802317..802616	+	99	33242076	-	CpB0745	-	hypothetical protein
742	 41.12	0	802616..802936	+	106	33242077	-	CpB0746	-	hypothetical protein
743	 41.41	0	803223..804200	+	325	33242078	-	CpB0747	-	ribosomal large subunit pseudouridine synthase A
744	 39.24	0	804310..804546	+	78	33242079	-	CpB0748	-	hypothetical protein
745	 44.69	+1	804990..805799	+	269	33242080	-	CpB0749	-	2-dehydro-3-deoxyphosphooctonate aldolase
746	 38.45	0	805796..806284	+	162	33242081	-	CpB0750	-	hypothetical protein
747	 40.94	0	806291..807013	+	240	33242082	-	CpB0751	-	ABC transporter
748	 41.58	0	807010..807834	-	274	33242083	-	CpB0752	-	hypothetical protein
749	 42.11	0	807891..808118	-	75	33242084	-	CpB0753	-	hypothetical protein
750	 40.99	0	808184..810679	-	831	33242085	-	CpB0754	-	hypothetical protein
751	 39.44	0	810884..813502	+	872	33242086	-	CpB0755	-	hypothetical protein
752	 44.84	+1	813829..815784	-	651	33242087	-	CpB0756	-	hypothetical protein
753	 39.32	0	815896..817164	-	422	33242088	-	CpB0757	-	hypothetical protein
754	 41.00	0	817267..818910	-	547	33242089	mviN	CpB0758	-	hypothetical protein
755	 36.16	-1	818894..819070	+	58	33242090	-	CpB0759	-	hypothetical protein
756	 40.59	0	819405..820286	+	293	33242091	-	CpB0760	-	endonuclease IV
757	 40.48	0	820405..821034	-	209	33242092	rpsD	CpB0761	-	30S ribosomal protein S4
758	 39.08	0	821251..822225	+	324	33242093	yceA	CpB0762	-	hypothetical protein
759	 35.72	-1	822306..822974	-	222	33242094	-	CpB0763	-	uridine kinase
760	 39.87	0	823295..824992	-	565	33242095	-	CpB0764	-	putative efflux protein
761	 38.21	0	824991..828065	+	1024	33242096	-	CpB0765	-	putative exodeoxyribonuclease V gamma
762	 37.81	0	828052..831204	+	1050	33242097	-	CpB0767	-	exodeoxyribonuclease V 135K chain
763	 39.74	0	831164..832177	-	337	33242098	-	CpB0766	-	hypothetical protein
764	 38.22	0	832167..833354	-	395	33242099	-	CpB0768	-	aromatic amino acid aminotransferase
765	 39.51	0	833488..835656	-	722	33242100	greA	CpB0769	-	fused transcript cleavage factor/uncharacterized domain-containing protein
766	 33.56	-2	835754..836197	+	147	33242101	-	CpB0770	-	hypothetical protein
767	 38.96	0	836268..837671	+	467	33242102	-	CpB0771	-	Na(+)-translocating NADH-quinone reductase subunit A
768	 39.24	0	837692..838690	-	332	33242103	-	CpB0772	-	delta-aminolevulinic acid dehydratase
769	 43.64	0	839045..839209	-	54	33242104	-	CpB0773	-	hypothetical protein
770	 40.29	0	839281..840876	+	531	33242105	-	CpB0774	-	hypothetical protein
771	 35.69	-1	840981..841235	+	84	33242106	-	CpB0775	-	hypothetical protein
772	 40.57	0	841440..842309	-	289	33242107	-	CpB0776	-	geranylgeranyl pyrophosphate synthase
773	 41.79	0	842325..842951	-	208	33242108	-	CpB0777	-	UDP-N-acetylglucosamine pyrophosphorylase
774	 38.56	0	843026..843733	-	235	33242109	tctD	CpB0778	-	trans-activating transcription regulator
775	 38.36	0	843930..845759	+	609	33242110	-	CpB0779	-	hypothetical protein
776	 39.74	0	845926..847407	+	493	33242111	recD	CpB0780	-	exonuclease V alpha-subunit
777	 42.87	0	847480..848328	-	282	33242112	-	CpB0781	-	hypothetical protein
778	 36.33	-1	848359..848658	-	99	161484683	rpsT	CpB0782	-	30S ribosomal protein S20
779	 37.15	-1	848919..850124	+	401	33242114	-	CpB0783	-	hypothetical protein
780	 39.97	0	850283..852001	+	572	33242115	-	CpB0784	-	RNA polymerase sigma factor
781	 38.02	0	852055..852459	+	134	33242116	-	CpB0785	-	dihydroneopterin-triphosphate epimerase
782	 41.91	0	852432..853784	+	450	33242117	-	CpB0786	-	dihydropteroate synthase
783	 38.40	0	853810..854322	+	170	33242118	-	CpB0787	-	dihydrofolate reductase
784	 39.41	0	854279..855019	+	246	33242119	-	CpB0788	-	hypothetical protein
785	 39.39	0	855074..855700	+	208	33242120	-	CpB0789	-	coenzyme pyrrolo-quinoline-quinone biosynthesis protein
786	 41.62	0	855858..856919	-	353	33242121	recA	CpB0790	-	recombinase A
787	 45.12	+1	857291..857833	-	180	33242122	-	CpB0791	-	5-formyltetrahydrofolate cyclo-ligase
788	 41.72	0	857843..859129	-	428	33242123	-	CpB0792	-	hypothetical protein
789	 38.63	0	859120..859704	-	194	33242124	-	CpB0793	-	hypothetical protein
790	 42.10	0	859713..861104	-	463	33242125	-	CpB0794	-	hypothetical protein
791	 36.36	-1	861206..861502	+	98	33242126	-	CpB0795	-	hypothetical protein
792	 43.45	0	861481..862488	+	335	33242127	nifR3	CpB0797	-	nitrogen regulating protein
793	 40.56	0	862440..865055	-	871	33242128	-	CpB0796	-	fused DNA topoisomerase I/SWI domain-containing protein
794	 42.14	0	865662..866456	+	264	33242129	-	CpB0798	-	hypothetical protein
795	 41.04	0	866463..867785	-	440	33242130	-	CpB0799	-	RNA polymerase factor sigma-54
796	 40.16	0	867788..869707	-	639	33242131	-	CpB0800	-	hypothetical protein
797	 41.91	0	869810..870520	+	236	33242132	-	CpB0801	-	uracil-DNA glycosylase
798	 46.34	+1	870505..870750	+	81	33242133	-	CpB0803	-	hypothetical protein
799	 41.38	0	870733..871353	-	206	33242134	-	CpB0802	-	putative deoxyribonucleotide triphosphate pyrophosphatase
800	 41.88	0	871538..872812	+	424	33242135	-	CpB0804	-	hypothetical protein
801	 43.01	0	872923..874503	+	526	33242136	groEL	CpB0805	-	chaperonin GroEL
802	 40.78	0	874827..875417	+	196	33242137	-	CpB0806	-	2-cys peroxiredoxin BAS1 precursor
803	 35.38	-1	875414..875803	-	129	33242138	-	CpB0807	-	hypothetical protein
804	 38.67	0	875910..876527	-	205	33242139	-	CpB0808	-	protein p60 precursor
805	 41.45	0	876517..877095	-	192	33242140	-	CpB0809	-	peptidoglycan-associated lipoprotein precursor
806	 42.21	0	877092..878387	-	431	33242141	tolB	CpB0810	-	translocation protein TolB
807	 41.44	0	878419..879207	-	262	33242142	-	CpB0811	-	hypothetical protein
808	 42.89	0	879211..879618	-	135	33242143	exbD	CpB0812	-	hypothetical protein
809	 40.34	0	879615..880313	-	232	33242144	exbB	CpB0813	-	ExbB
40.62	MEAN

3.18	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.