IslandPath Analysis: Chlamydophila pneumoniae TW-183



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.62   STD DEV: 3.18
Chlamydophila pneumoniae TW-183, complete genome - 1..1225935
1113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
662	 41.49	0	723283..723699	-	138	33241997	rplP	CpB0666	-	50S ribosomal protein L16
663	 41.82	0	723728..724399	-	223	33241998	rpsC	CpB0667	-	30S ribosomal protein S3
664	 41.37	0	724415..724750	-	111	33241999	rplV	CpB0668	-	50S ribosomal protein L22
665	 38.20	0	724769..725035	-	88	33242000	rpsS	CpB0669	-	30S ribosomal protein S19
666	 42.22	0	725041..725895	-	284	33242001	rplB	CpB0670	-	50S ribosomal protein L2
667	 38.39	0	725917..726252	-	111	33242002	rplW	CpB0671	-	50S ribosomal protein L23
668	 36.89	-1	726269..726943	-	224	33242003	rplD	CpB0672	-	50S ribosomal protein L4
669	 41.36	0	726976..727635	-	219	161484684	rplC	CpB0673	-	50S ribosomal protein L3
670	 44.21	+1	727924..728925	-	333	33242005	-	CpB0674	-	hypothetical protein
671	 44.72	+1	729029..729994	-	321	33242006	fmt	CpB0675	-	methionyl-tRNA formyltransferase
672	 42.14	0	729984..730823	-	279	33242007	-	CpB0676	-	UDP-N-acetylglucosamine acyltransferase
673	 40.26	0	730836..731297	-	153	33242008	fabZ	CpB0677	-	(3R)-hydroxymyristoyl-ACP dehydratase
674	 39.46	0	731309..732157	-	282	33242009	lpxC	CpB0678	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
675	 42.44	0	732187..733812	-	541	33242010	lnt	CpB0679	-	apolipoprotein N-acyltransferase
676	 41.45	0	733822..734289	-	155	33242011	-	CpB0680	-	cytosolic acyl coenzyme A thioester hydrolase
677	 37.20	-1	734420..735169	-	249	33242012	-	CpB0681	-	DNA polymerase III subunit epsilon
678	 38.33	0	735194..735373	+	59	33242013	-	CpB0682	-	hypothetical protein
679	 39.29	0	735370..735705	-	111	33242014	-	CpB0683	-	hypothetical protein
680	 39.75	0	735774..736490	-	238	33242015	-	CpB0684	-	hypothetical protein
681	 41.42	0	736855..737163	+	102	33242016	-	CpB0685	-	thioredoxin
682	 40.13	0	737179..737649	-	156	33242017	-	CpB0686	-	putative rRNA methylase
683	 38.61	0	737646..738422	-	258	33242018	-	CpB0687	-	MIP protein
684	 40.85	0	738491..740245	-	584	33242019	aspS	CpB0688	-	aspartyl-tRNA synthetase
685	 41.07	0	740220..741512	-	430	33242020	hisS	CpB0689	-	histidyl-tRNA synthetase
686	 39.22	0	741876..742079	-	67	33242021	-	CpB0690	-	hypothetical protein
687	 42.18	0	742323..743690	+	455	33242022	uhpC	CpB0691	-	hexose phosphate transport system regulatory protein
688	 40.26	0	743710..747432	+	1240	33242023	dnaE	CpB0692	-	DNA polymerase III subunit alpha
689	 43.39	0	747496..748380	-	294	33242024	-	CpB0693	-	hypothetical protein
690	 40.02	0	748531..749487	+	318	33242025	-	CpB0694	-	hypothetical protein
691	 38.83	0	749501..750100	+	199	33242026	-	CpB0695	-	hypothetical protein
692	 40.62	0	750069..750521	+	150	33242027	-	CpB0696	-	putative sigma regulatory factor-histidine kinase
693	 40.09	0	750524..750952	-	142	33242028	-	CpB0697	-	hypothetical protein
694	 44.09	+1	751063..752373	+	436	33242029	dacB	CpB0698	-	serine-type D-Ala-D-Ala carboxypeptidase
695	 36.67	-1	752445..752624	+	59	33242030	-	CpB0699	-	hypothetical protein
696	 38.33	0	752609..752788	+	59	33242031	-	CpB0700	-	hypothetical protein
697	 41.10	0	752896..753990	-	364	33242032	-	CpB0701	-	fmu methyltransferase
698	 40.87	0	754087..755241	-	384	33242033	-	CpB0702	-	hypothetical protein
699	 43.25	0	755370..756539	-	389	33242034	-	CpB0703	-	hypothetical protein
700	 45.60	+1	756575..757723	-	382	33242035	-	CpB0704	-	hypothetical protein
701	 54.86	+2	758001..758525	-	174	33242036	-	CpB0705	-	hypothetical protein
702	 44.33	+1	759044..760252	-	402	33242037	pgk	CpB0706	-	phosphoglycerate kinase
703	 42.86	0	760290..761570	-	426	33242038	-	CpB0707	-	phosphate permease
704	 36.89	-1	761577..762251	-	224	33242039	-	CpB0708	-	hypothetical protein
705	 43.90	+1	762306..763280	+	324	33242040	-	CpB0709	-	dipeptide ABC transporter, ATP-binding protein
706	 41.23	0	763270..764244	+	324	33242041	dppF	CpB0710	-	dipeptide transport protein
707	 39.71	0	764316..764519	+	67	33242042	-	CpB0712	-	hypothetical protein
708	 43.09	0	764500..765360	-	286	33242043	spoOJ	CpB0711	-	Soj antagonist
709	 40.74	0	765495..765683	-	62	33242044	-	CpB0713	-	hypothetical protein
710	 40.37	0	765886..766539	+	217	33242045	-	CpB0714	-	hypothetical protein
711	 40.16	0	766848..767462	+	204	33242046	-	CpB0715	-	hypothetical protein
712	 42.51	0	767506..768726	-	406	33242047	-	CpB0716	-	putative NifS-related protein
713	 41.47	0	768755..770020	-	421	33242048	-	CpB0717	-	putative ABC transporter membrane protein
714	 41.12	0	770004..770774	-	256	33242049	-	CpB0718	-	ABC transporter ATPase
715	 41.92	0	770780..772234	-	484	33242050	-	CpB0719	-	cysteine desulfurase activator complex subunit SufB
716	 40.59	0	772559..773578	-	339	33242051	-	CpB0720	-	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
717	 40.67	0	773649..776921	-	1090	33242052	-	CpB0721	-	penicillin-binding protein 2
718	 42.82	0	777538..778707	+	389	33242053	-	CpB0722	-	major outer membrane protein
719	 38.13	0	779091..779924	+	277	33242054	rpsB	CpB0723	-	30S ribosomal protein S2
720	 39.81	0	779924..780772	+	282	33242055	tsf	CpB0724	-	elongation factor Ts
721	 39.89	0	780780..781526	+	248	33242056	pyrH	CpB0725	-	uridylate kinase
722	 38.86	0	781504..782046	+	180	33242057	frr	CpB0726	-	ribosome recycling factor
723	 40.50	0	782419..782934	+	171	33242058	-	CpB0727	-	hypothetical protein
724	 37.79	0	782921..783997	+	358	33242059	-	CpB0728	-	ATP:guanido phosphotransferase
725	 41.41	0	784248..787007	-	919	33242060	-	CpB0729	-	outer membrane secretion protein Q
726	 40.29	0	787004..788512	-	502	33242061	-	CpB0730	-	serine/threonine-protein kinase
727	 42.11	0	788528..789643	-	371	33242062	fliN	CpB0731	-	type III secretion system protein
728	 37.60	0	789653..790495	-	280	33242063	-	CpB0732	-	hypothetical protein
729	 39.25	0	790499..791005	-	168	33242064	-	CpB0733	-	hypothetical protein
730	 45.82	+1	791023..792351	-	442	33242065	yopN	CpB0734	-	type III secretion system ATPase
731	 42.22	0	792353..793027	-	224	33242066	-	CpB0735	-	hypothetical protein
732	 38.89	0	793061..793510	-	149	33242067	-	CpB0736	-	hypothetical protein
733	 39.61	0	793529..793783	-	84	33242068	-	CpB0737	-	hypothetical protein
734	 35.76	-1	793805..794092	-	95	33242069	-	CpB0738	-	hypothetical protein
735	 40.07	0	794100..796622	-	840	33242070	-	CpB0739	-	forkhead domain-containing protein
736	 39.71	0	796636..797043	-	135	33242071	-	CpB0740	-	hypothetical protein
737	 39.41	0	797395..798414	-	339	33242072	hemA	CpB0741	-	glutamyl-tRNA reductase
738	 40.18	0	798694..798912	-	72	33242073	-	CpB0742	-	hypothetical protein
739	 38.09	0	798964..800772	+	602	33242074	-	CpB0743	-	DNA topoisomerase IV subunit B
740	 40.99	0	800776..802212	+	478	33242075	-	CpB0744	-	DNA topoisomerase IV subunit A
741	 41.67	0	802317..802616	+	99	33242076	-	CpB0745	-	hypothetical protein
742	 41.12	0	802616..802936	+	106	33242077	-	CpB0746	-	hypothetical protein
743	 41.41	0	803223..804200	+	325	33242078	-	CpB0747	-	ribosomal large subunit pseudouridine synthase A
744	 39.24	0	804310..804546	+	78	33242079	-	CpB0748	-	hypothetical protein
745	 44.69	+1	804990..805799	+	269	33242080	-	CpB0749	-	2-dehydro-3-deoxyphosphooctonate aldolase
746	 38.45	0	805796..806284	+	162	33242081	-	CpB0750	-	hypothetical protein
747	 40.94	0	806291..807013	+	240	33242082	-	CpB0751	-	ABC transporter
748	 41.58	0	807010..807834	-	274	33242083	-	CpB0752	-	hypothetical protein
749	 42.11	0	807891..808118	-	75	33242084	-	CpB0753	-	hypothetical protein
750	 40.99	0	808184..810679	-	831	33242085	-	CpB0754	-	hypothetical protein
751	 39.44	0	810884..813502	+	872	33242086	-	CpB0755	-	hypothetical protein
752	 44.84	+1	813829..815784	-	651	33242087	-	CpB0756	-	hypothetical protein
753	 39.32	0	815896..817164	-	422	33242088	-	CpB0757	-	hypothetical protein
754	 41.00	0	817267..818910	-	547	33242089	mviN	CpB0758	-	hypothetical protein
755	 36.16	-1	818894..819070	+	58	33242090	-	CpB0759	-	hypothetical protein
756	 40.59	0	819405..820286	+	293	33242091	-	CpB0760	-	endonuclease IV
757	 40.48	0	820405..821034	-	209	33242092	rpsD	CpB0761	-	30S ribosomal protein S4
758	 39.08	0	821251..822225	+	324	33242093	yceA	CpB0762	-	hypothetical protein
759	 35.72	-1	822306..822974	-	222	33242094	-	CpB0763	-	uridine kinase
760	 39.87	0	823295..824992	-	565	33242095	-	CpB0764	-	putative efflux protein
761	 38.21	0	824991..828065	+	1024	33242096	-	CpB0765	-	putative exodeoxyribonuclease V gamma
40.62	MEAN

3.18	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.