IslandPathversion 1.0

IslandPath Analysis: Chlamydophila pneumoniae TW-183



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.62 STD DEV: 3.18
Chlamydophila pneumoniae TW-183, complete genome - 1..1225935
1113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
601	 39.39	0	668064..668756	-	230	33241936	-	CpB0604	-	putative phosphoglycolate phosphatase
602	 42.92	0	668825..669502	+	225	33241937	-	CpB0606	-	hypothetical protein
603	 36.63	-1	669740..670042	+	100	33241938	-	CpB0607	-	hypothetical protein
604	 42.37	0	670029..671123	+	364	33241939	atoS	CpB0608	-	AtoS
605	 44.01	+1	671184..673028	-	614	33241940	-	CpB0609	-	hypothetical protein
606	 44.73	+1	673324..674508	+	394	33241941	atoC	CpB0610	-	acetate metabolism regulatory protein
607	 43.38	0	674763..675449	+	228	33241942	-	CpB0611	-	hypothetical protein
608	 43.73	0	675394..675951	+	185	33241943	-	CpB0612	-	hypothetical protein
609	 41.37	0	675962..676720	+	252	33241944	recO	CpB0613	-	DNA repair protein RecO
610	 37.50	0	676835..677434	-	199	33241945	-	CpB0614	-	hypothetical protein
611	 42.70	0	677695..678345	+	216	33241946	-	CpB0615	-	hypothetical protein
612	 44.23	+1	678475..678786	+	103	33241947	hlyA	CpB0617	-	alpha-hemolysin
613	 42.06	0	678710..679798	-	362	33241948	-	CpB0616	-	hypothetical protein
614	 43.93	+1	679905..682283	+	792	33241949	pheT	CpB0618	-	phenylalanyl-tRNA synthetase subunit beta
615	 42.70	0	682280..683251	+	323	33241950	-	CpB0619	-	hypothetical protein
616	 43.87	+1	683261..683782	+	173	33241951	-	CpB0620	-	methylated-DNA-protein-cysteine S-methyltransferase
617	 43.51	0	683798..685537	-	579	33241952	-	CpB0621	-	oligopeptide ABC transporter permease protein
618	 40.82	0	685538..687019	-	493	33241953	dppB	CpB0622	-	dipeptide transport system permease protein
619	 41.87	0	687001..689109	-	702	33241954	-	CpB0623	-	oligopeptide ABC transporter
620	 37.65	0	689146..689469	-	107	33241955	-	CpB0624	-	hypothetical protein
621	 35.35	-1	689783..690229	-	148	33241956	-	CpB0625	-	hypothetical protein
622	 35.82	-1	690423..691427	-	334	33241957	-	CpB0626	-	hypothetical protein
623	 41.46	0	691527..692510	+	327	161484685	hemH	CpB0627	-	ferrochelatase
624	 38.91	0	692515..693267	-	250	33241959	-	CpB0628	-	glutamine-binding periplasmic protein precursor
625	 39.04	0	693469..694029	-	186	33241960	-	CpB0629	-	putative methylase
626	 42.97	0	694026..694793	-	255	33241961	-	CpB0630	-	hypothetical protein
627	 38.01	0	694892..696217	-	441	33241962	-	CpB0631	-	glucose-1-phosphate adenylyltransferase
628	 41.55	0	696335..696967	-	210	33241963	-	CpB0632	-	UMP synthase
629	 36.49	-1	697027..697311	+	94	33241964	-	CpB0633	-	hypothetical protein
630	 42.15	0	697348..698742	-	464	33241965	rho	CpB0634	-	transcription termination factor Rho
631	 38.03	0	698739..699356	-	205	33241966	coaE	CpB0635	-	dephospho-CoA kinase
632	 38.12	0	699341..701953	-	870	33241967	-	CpB0636	-	DNA polymerase I
633	 41.69	0	701977..702969	-	330	33241968	-	CpB0637	-	proteinase IV
634	 42.45	0	703102..704724	-	540	33241969	-	CpB0638	-	plastidic ATP/ADP-transporter
635	 40.63	0	704953..705459	-	168	33241970	-	CpB0639	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
636	 36.54	-1	705823..705978	-	51	33241971	-	CpB0640	-	hypothetical protein
637	 39.94	0	706056..707462	+	468	33241972	dnaB	CpB0641	-	replicative DNA helicase
638	 38.36	0	707591..707749	-	52	33241973	-	CpB0642	-	hypothetical protein
639	 42.81	0	707806..709641	+	611	33241974	gidA	CpB0643	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
640	 40.11	0	709628..710335	+	235	33241975	-	CpB0644	-	lipoate--protein ligase A
641	 40.69	0	710332..710766	-	144	33241976	ndk	CpB0645	-	nucleoside diphosphate kinase
642	 41.35	0	710838..711461	-	207	33241977	ruvA	CpB0646	-	Holliday junction DNA helicase motor protein
643	 42.41	0	711463..711969	-	168	33241978	ruvC	CpB0647	-	Holliday junction resolvase
644	 38.32	0	712112..713074	-	320	33241979	-	CpB0648	-	hypothetical protein
645	 40.77	0	713482..714315	-	277	33241980	-	CpB0649	-	hypothetical protein
646	 38.69	0	714330..715337	-	335	33241981	-	CpB0650	-	glyceraldehyde-3-phosphate dehydrogenase
647	 35.90	-1	715379..715807	-	142	33241982	rplQ	CpB0651	-	50S ribosomal protein L17
648	 36.62	-1	715814..716938	-	374	33241983	-	CpB0652	-	DNA-directed RNA polymerase subunit alpha
649	 41.54	0	716959..717360	-	133	33241984	-	CpB0653	-	30S ribosomal protein S11
650	 37.40	-1	717382..717750	-	122	33241985	rpsM	CpB0654	-	30S ribosomal protein S13
651	 39.74	0	717806..719179	-	457	33241986	secY	CpB0655	-	preprotein translocase subunit SecY
652	 39.08	0	719204..719638	-	144	33241987	rplO	CpB0656	-	50S ribosomal protein L15
653	 39.16	0	719631..720128	-	165	33241988	rpsE	CpB0657	-	30S ribosomal protein S5
654	 37.10	-1	720146..720517	-	123	33241989	rplR	CpB0658	-	50S ribosomal protein L18
655	 39.67	0	720528..721079	-	183	33241990	rplF	CpB0659	-	50S ribosomal protein L6
656	 41.54	0	721106..721507	-	133	33241991	rpsH	CpB0660	-	30S ribosomal protein S8
657	 37.75	0	721525..722067	-	180	33241992	rplE	CpB0661	-	50S ribosomal protein L5
658	 39.58	0	722069..722404	-	111	33241993	rplX	CpB0662	-	50S ribosomal protein L24
659	 36.86	-1	722418..722786	-	122	33241994	rplN	CpB0663	-	50S ribosomal protein L14
660	 37.16	-1	722809..723069	-	86	33241995	rpsQ	CpB0664	-	30S ribosomal protein S17
661	 36.07	-1	723062..723280	-	72	33241996	rpmC	CpB0665	-	50S ribosomal protein L29
662	 41.49	0	723283..723699	-	138	33241997	rplP	CpB0666	-	50S ribosomal protein L16
663	 41.82	0	723728..724399	-	223	33241998	rpsC	CpB0667	-	30S ribosomal protein S3
664	 41.37	0	724415..724750	-	111	33241999	rplV	CpB0668	-	50S ribosomal protein L22
665	 38.20	0	724769..725035	-	88	33242000	rpsS	CpB0669	-	30S ribosomal protein S19
666	 42.22	0	725041..725895	-	284	33242001	rplB	CpB0670	-	50S ribosomal protein L2
667	 38.39	0	725917..726252	-	111	33242002	rplW	CpB0671	-	50S ribosomal protein L23
668	 36.89	-1	726269..726943	-	224	33242003	rplD	CpB0672	-	50S ribosomal protein L4
669	 41.36	0	726976..727635	-	219	161484684	rplC	CpB0673	-	50S ribosomal protein L3
670	 44.21	+1	727924..728925	-	333	33242005	-	CpB0674	-	hypothetical protein
671	 44.72	+1	729029..729994	-	321	33242006	fmt	CpB0675	-	methionyl-tRNA formyltransferase
672	 42.14	0	729984..730823	-	279	33242007	-	CpB0676	-	UDP-N-acetylglucosamine acyltransferase
673	 40.26	0	730836..731297	-	153	33242008	fabZ	CpB0677	-	(3R)-hydroxymyristoyl-ACP dehydratase
674	 39.46	0	731309..732157	-	282	33242009	lpxC	CpB0678	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
675	 42.44	0	732187..733812	-	541	33242010	lnt	CpB0679	-	apolipoprotein N-acyltransferase
676	 41.45	0	733822..734289	-	155	33242011	-	CpB0680	-	cytosolic acyl coenzyme A thioester hydrolase
677	 37.20	-1	734420..735169	-	249	33242012	-	CpB0681	-	DNA polymerase III subunit epsilon
678	 38.33	0	735194..735373	+	59	33242013	-	CpB0682	-	hypothetical protein
679	 39.29	0	735370..735705	-	111	33242014	-	CpB0683	-	hypothetical protein
680	 39.75	0	735774..736490	-	238	33242015	-	CpB0684	-	hypothetical protein
681	 41.42	0	736855..737163	+	102	33242016	-	CpB0685	-	thioredoxin
682	 40.13	0	737179..737649	-	156	33242017	-	CpB0686	-	putative rRNA methylase
683	 38.61	0	737646..738422	-	258	33242018	-	CpB0687	-	MIP protein
684	 40.85	0	738491..740245	-	584	33242019	aspS	CpB0688	-	aspartyl-tRNA synthetase
685	 41.07	0	740220..741512	-	430	33242020	hisS	CpB0689	-	histidyl-tRNA synthetase
686	 39.22	0	741876..742079	-	67	33242021	-	CpB0690	-	hypothetical protein
687	 42.18	0	742323..743690	+	455	33242022	uhpC	CpB0691	-	hexose phosphate transport system regulatory protein
688	 40.26	0	743710..747432	+	1240	33242023	dnaE	CpB0692	-	DNA polymerase III subunit alpha
689	 43.39	0	747496..748380	-	294	33242024	-	CpB0693	-	hypothetical protein
690	 40.02	0	748531..749487	+	318	33242025	-	CpB0694	-	hypothetical protein
691	 38.83	0	749501..750100	+	199	33242026	-	CpB0695	-	hypothetical protein
692	 40.62	0	750069..750521	+	150	33242027	-	CpB0696	-	putative sigma regulatory factor-histidine kinase
693	 40.09	0	750524..750952	-	142	33242028	-	CpB0697	-	hypothetical protein
694	 44.09	+1	751063..752373	+	436	33242029	dacB	CpB0698	-	serine-type D-Ala-D-Ala carboxypeptidase
695	 36.67	-1	752445..752624	+	59	33242030	-	CpB0699	-	hypothetical protein
696	 38.33	0	752609..752788	+	59	33242031	-	CpB0700	-	hypothetical protein
697	 41.10	0	752896..753990	-	364	33242032	-	CpB0701	-	fmu methyltransferase
698	 40.87	0	754087..755241	-	384	33242033	-	CpB0702	-	hypothetical protein
699	 43.25	0	755370..756539	-	389	33242034	-	CpB0703	-	hypothetical protein
700	 45.60	+1	756575..757723	-	382	33242035	-	CpB0704	-	hypothetical protein
40.62	MEAN

3.18	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.