IslandPathversion 1.0

IslandPath Analysis: Chlamydophila pneumoniae TW-183



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.62 STD DEV: 3.18
Chlamydophila pneumoniae TW-183, complete genome - 1..1225935
1113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
552	 36.48	-1	613145..613621	+	158	33241887	lspA	CpB0556	-	lipoprotein signal peptidase
553	 42.81	0	613667..615016	+	449	33241888	-	CpB0557	-	alanine/glycine transporter protein
554	 38.61	0	615155..615514	+	119	33241889	-	CpB0558	-	hypothetical protein
555	 38.36	0	615519..615836	+	105	33241890	-	CpB0559	-	hypothetical protein
556	 42.41	0	616027..618870	+	947	33241891	-	CpB0560	-	Omp11
557	 43.12	0	619016..624187	+	1723	33241892	-	CpB0561	-	outer membrane protein omp5
558	 39.67	0	624492..625328	+	278	33241893	-	CpB0562	-	adhesin B protein
559	 41.33	0	625325..626062	+	245	33241894	-	CpB0563	-	ABC transporter ATPase
560	 41.67	0	626041..626928	+	295	33241895	-	CpB0565	-	iron transport protein
561	 45.34	+1	626844..627851	-	335	33241896	obgE	CpB0564	-	GTPase ObgE
562	 45.10	+1	627952..628206	-	84	33241897	rpmA	CpB0566	-	50S ribosomal protein L27
563	 40.43	0	628231..628554	-	107	33241898	rplU	CpB0567	-	50S ribosomal protein L21
564	 41.81	0	628983..629513	+	176	161484687	ispF	CpB0568	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
565	 40.13	0	629510..630553	-	347	33241900	-	CpB0569	-	sulfite reductase [NADPH] flavoprotein alpha-component
566	 39.31	0	630574..630891	-	105	161484686	rpsJ	CpB0570	-	30S ribosomal protein S10
567	 41.73	0	630899..632983	-	694	33241902	-	CpB0571	-	elongation factor G
568	 42.19	0	633017..633490	-	157	33241903	-	CpB0572	-	30S ribosomal protein S7
569	 44.35	+1	633538..633909	-	123	33241904	rpsL	CpB0573	-	30S ribosomal protein S12
570	 32.20	-2	633969..634145	+	58	33241905	-	CpB0575	-	hypothetical protein
571	 40.26	0	634131..635069	-	312	33241906	-	CpB0574	-	hypothetical protein
572	 39.23	0	635128..635466	+	112	33241907	-	CpB0576	-	hypothetical protein
573	 40.66	0	635629..637566	+	645	33241908	-	CpB0577	-	carboxy-terminal proteinase precursor
574	 41.12	0	637644..638234	-	196	33241909	-	CpB0578	-	sulfur-rich protein
575	 42.55	0	638513..640183	-	556	33241910	-	CpB0579	-	60K cysteine-rich outer membrane protein precursor
576	 41.39	0	640350..640622	-	90	33241911	-	CpB0580	-	9K cysteine-rich outer membrane protein
577	 36.51	-1	641064..641252	+	62	33241912	-	CpB0581	-	hypothetical protein
578	 45.45	+1	641417..642934	-	505	33241913	gltX	CpB0582	-	glutamyl-tRNA synthetase
579	 39.48	0	643190..643726	-	178	33241914	-	CpB0583	-	early upstream orf EUO
580	 42.96	0	644237..645358	-	373	33241915	-	CpB0584	-	hypothetical protein
581	 43.35	0	645612..647378	-	588	33241916	recJ	CpB0585	-	ssDNA-specific exonuclease
582	 40.65	0	647464..651672	-	1402	33241917	-	CpB0586	-	bifunctional preprotein translocase subunit SecD/SecF
583	 43.42	0	651852..652952	-	366	33241918	-	CpB0587	-	hypothetical protein
584	 39.84	0	653463..654215	+	250	33241919	-	CpB0588	-	hypothetical protein
585	 40.02	0	654216..655142	+	308	33241920	-	CpB0589	-	phosphatidate cytidylyltransferase
586	 42.09	0	655139..655789	+	216	33241921	cmk	CpB0590	-	cytidylate kinase
587	 40.06	0	655786..656424	+	212	33241922	-	CpB0591	-	glycerol-3-phosphate acyltransferase
588	 41.28	0	656429..658114	+	561	33241923	argS	CpB0593	-	arginyl-tRNA synthetase
589	 45.10	+1	658068..659444	-	458	33241924	-	CpB0592	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
590	 46.56	+1	659674..661941	+	755	33241925	-	CpB0594	-	hypothetical protein
591	 41.14	0	662010..662726	-	238	33241926	-	CpB0595	-	hypothetical protein
592	 40.54	0	662713..663267	-	184	33241927	-	CpB0596	-	hypothetical protein
593	 39.92	0	663301..663816	-	171	33241928	bltD	CpB0597	-	spermine/spermidine acetyltransferase
594	 43.57	0	663813..664574	-	253	33241929	prfB	CpB0598	-	peptide chain release factor 2
595	 37.78	0	664821..665000	+	59	33241930	-	CpB0599	-	hypothetical protein
596	 37.18	-1	665062..665217	-	51	33241931	-	CpB0600	-	histone H3
597	 35.98	-1	665217..665480	+	87	33241932	-	CpB0601	-	hypothetical protein
598	 42.68	0	665728..666690	+	320	33241933	yaeI	CpB0602	-	putative phosphoesterase
599	 43.24	0	666683..667318	+	211	33241934	ispD	CpB0603	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
600	 44.28	+1	667315..668118	+	267	33241935	truA	CpB0605	-	tRNA pseudouridine synthase A
601	 39.39	0	668064..668756	-	230	33241936	-	CpB0604	-	putative phosphoglycolate phosphatase
602	 42.92	0	668825..669502	+	225	33241937	-	CpB0606	-	hypothetical protein
603	 36.63	-1	669740..670042	+	100	33241938	-	CpB0607	-	hypothetical protein
604	 42.37	0	670029..671123	+	364	33241939	atoS	CpB0608	-	AtoS
605	 44.01	+1	671184..673028	-	614	33241940	-	CpB0609	-	hypothetical protein
606	 44.73	+1	673324..674508	+	394	33241941	atoC	CpB0610	-	acetate metabolism regulatory protein
607	 43.38	0	674763..675449	+	228	33241942	-	CpB0611	-	hypothetical protein
608	 43.73	0	675394..675951	+	185	33241943	-	CpB0612	-	hypothetical protein
609	 41.37	0	675962..676720	+	252	33241944	recO	CpB0613	-	DNA repair protein RecO
610	 37.50	0	676835..677434	-	199	33241945	-	CpB0614	-	hypothetical protein
611	 42.70	0	677695..678345	+	216	33241946	-	CpB0615	-	hypothetical protein
612	 44.23	+1	678475..678786	+	103	33241947	hlyA	CpB0617	-	alpha-hemolysin
613	 42.06	0	678710..679798	-	362	33241948	-	CpB0616	-	hypothetical protein
614	 43.93	+1	679905..682283	+	792	33241949	pheT	CpB0618	-	phenylalanyl-tRNA synthetase subunit beta
615	 42.70	0	682280..683251	+	323	33241950	-	CpB0619	-	hypothetical protein
616	 43.87	+1	683261..683782	+	173	33241951	-	CpB0620	-	methylated-DNA-protein-cysteine S-methyltransferase
617	 43.51	0	683798..685537	-	579	33241952	-	CpB0621	-	oligopeptide ABC transporter permease protein
618	 40.82	0	685538..687019	-	493	33241953	dppB	CpB0622	-	dipeptide transport system permease protein
619	 41.87	0	687001..689109	-	702	33241954	-	CpB0623	-	oligopeptide ABC transporter
620	 37.65	0	689146..689469	-	107	33241955	-	CpB0624	-	hypothetical protein
621	 35.35	-1	689783..690229	-	148	33241956	-	CpB0625	-	hypothetical protein
622	 35.82	-1	690423..691427	-	334	33241957	-	CpB0626	-	hypothetical protein
623	 41.46	0	691527..692510	+	327	161484685	hemH	CpB0627	-	ferrochelatase
624	 38.91	0	692515..693267	-	250	33241959	-	CpB0628	-	glutamine-binding periplasmic protein precursor
625	 39.04	0	693469..694029	-	186	33241960	-	CpB0629	-	putative methylase
626	 42.97	0	694026..694793	-	255	33241961	-	CpB0630	-	hypothetical protein
627	 38.01	0	694892..696217	-	441	33241962	-	CpB0631	-	glucose-1-phosphate adenylyltransferase
628	 41.55	0	696335..696967	-	210	33241963	-	CpB0632	-	UMP synthase
629	 36.49	-1	697027..697311	+	94	33241964	-	CpB0633	-	hypothetical protein
630	 42.15	0	697348..698742	-	464	33241965	rho	CpB0634	-	transcription termination factor Rho
631	 38.03	0	698739..699356	-	205	33241966	coaE	CpB0635	-	dephospho-CoA kinase
632	 38.12	0	699341..701953	-	870	33241967	-	CpB0636	-	DNA polymerase I
633	 41.69	0	701977..702969	-	330	33241968	-	CpB0637	-	proteinase IV
634	 42.45	0	703102..704724	-	540	33241969	-	CpB0638	-	plastidic ATP/ADP-transporter
635	 40.63	0	704953..705459	-	168	33241970	-	CpB0639	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
636	 36.54	-1	705823..705978	-	51	33241971	-	CpB0640	-	hypothetical protein
637	 39.94	0	706056..707462	+	468	33241972	dnaB	CpB0641	-	replicative DNA helicase
638	 38.36	0	707591..707749	-	52	33241973	-	CpB0642	-	hypothetical protein
639	 42.81	0	707806..709641	+	611	33241974	gidA	CpB0643	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
640	 40.11	0	709628..710335	+	235	33241975	-	CpB0644	-	lipoate--protein ligase A
641	 40.69	0	710332..710766	-	144	33241976	ndk	CpB0645	-	nucleoside diphosphate kinase
642	 41.35	0	710838..711461	-	207	33241977	ruvA	CpB0646	-	Holliday junction DNA helicase motor protein
643	 42.41	0	711463..711969	-	168	33241978	ruvC	CpB0647	-	Holliday junction resolvase
644	 38.32	0	712112..713074	-	320	33241979	-	CpB0648	-	hypothetical protein
645	 40.77	0	713482..714315	-	277	33241980	-	CpB0649	-	hypothetical protein
646	 38.69	0	714330..715337	-	335	33241981	-	CpB0650	-	glyceraldehyde-3-phosphate dehydrogenase
647	 35.90	-1	715379..715807	-	142	33241982	rplQ	CpB0651	-	50S ribosomal protein L17
648	 36.62	-1	715814..716938	-	374	33241983	-	CpB0652	-	DNA-directed RNA polymerase subunit alpha
649	 41.54	0	716959..717360	-	133	33241984	-	CpB0653	-	30S ribosomal protein S11
650	 37.40	-1	717382..717750	-	122	33241985	rpsM	CpB0654	-	30S ribosomal protein S13
651	 39.74	0	717806..719179	-	457	33241986	secY	CpB0655	-	preprotein translocase subunit SecY
40.62	MEAN

3.18	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.