IslandPathversion 1.0

IslandPath Analysis: Chlamydophila pneumoniae TW-183



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.62 STD DEV: 3.18
Chlamydophila pneumoniae TW-183, complete genome - 1..1225935
1113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
507	 42.54	0	570654..571793	-	379	33241842	-	CpB0511	-	hypothetical protein
508	 42.95	0	571973..572128	+	51	33241843	-	CpB0512	-	hypothetical protein
509	 44.44	+1	572173..572325	-	50	33241844	-	CpB0513	-	hypothetical protein
510	 45.50	+1	572464..572685	-	73	33241845	-	CpB0514	-	hypothetical protein
511	 43.44	0	572852..574117	+	421	33241846	-	CpB0515	-	L,L-diaminopimelate aminotransferase
512	 40.76	0	574114..575136	+	340	33241847	-	CpB0516	-	hypothetical protein
513	 37.73	0	575138..575410	-	90	33241848	-	CpB0517	-	hypothetical protein
514	 43.29	0	575403..576356	-	317	33241849	-	CpB0518	-	hypothetical protein
515	 46.20	+1	576524..577681	-	385	33241850	-	CpB0519	-	hypothetical protein
516	 45.40	+1	577981..579687	+	568	33241851	-	CpB0520	-	prolyl-tRNA synthetase
517	 40.03	0	579752..580975	+	407	33241852	hrcA	CpB0521	-	heat-inducible transcription repressor
518	 38.20	0	580972..581526	+	184	33241853	grpE	CpB0522	-	hypothetical protein
519	 42.21	0	581556..583538	+	660	33241854	dnaK	CpB0523	-	molecular chaperone DnaK
520	 38.89	0	583575..583808	-	77	33241855	-	CpB0524	-	hypothetical protein
521	 42.98	0	583809..585839	+	676	33241856	-	CpB0525	-	proteins of ribonuclease
522	 46.02	+1	585841..586431	+	196	33241857	-	CpB0526	-	N-methylpurine-DNA glycosylase
523	 40.74	0	586383..587165	+	260	33241858	-	CpB0527	-	hypothetical protein
524	 40.61	0	587283..587447	+	54	33241859	-	CpB0528	-	hypothetical protein
525	 38.89	0	587464..587625	+	53	33241860	-	CpB0529	-	hypothetical protein
526	 38.78	0	587657..588133	+	158	33241861	-	CpB0530	-	hypothetical protein
527	 43.99	+1	588135..589298	+	387	33241862	-	CpB0531	-	hemolysin C
528	 39.60	0	589463..589813	+	116	33241863	-	CpB0532	-	sigma F regulatory factor
529	 44.71	+1	589875..591737	+	620	33241864	-	CpB0533	-	hypothetical protein
530	 42.77	0	591924..593078	+	384	33241865	-	CpB0534	-	hypothetical protein
531	 45.41	+1	593051..593845	+	264	33241866	-	CpB0535	-	hypothetical protein
532	 44.68	+1	593793..594506	+	237	33241867	ubiE	CpB0536	-	ubiquinone/menaquinone biosynthesis methyltransferase
533	 45.31	+1	594574..596193	-	539	33241868	-	CpB0537	-	hypothetical protein
534	 45.12	+1	596114..596953	-	279	33241869	-	CpB0538	-	hypothetical protein
535	 38.36	0	597151..598125	-	324	33241870	-	CpB0539	-	hypothetical protein
536	 43.51	0	598223..599008	-	261	33241871	dapF	CpB0540	-	diaminopimelate epimerase
537	 40.45	0	598965..599540	-	191	33241872	clp	CpB0541	-	ATP-dependent Clp protease proteolytic subunit
538	 41.67	0	599560..601119	-	519	33241873	glyA	CpB0542	-	serine hydroxymethyltransferase
539	 42.41	0	601309..601980	+	223	33241874	hemD	CpB0543	-	uroporphyrinogen-III synthase
540	 45.35	+1	602045..602377	+	110	33241875	-	CpB0544	-	hypothetical protein
541	 41.76	0	602425..603504	+	359	33241876	-	CpB0545	-	hypothetical protein
542	 37.91	0	603844..604608	+	254	33241877	-	CpB0546	-	hypothetical protein
543	 41.11	0	605029..606018	-	329	33241878	kpsF	CpB0547	-	KpsF
544	 44.08	+1	606045..607226	-	393	33241879	-	CpB0548	-	branched-chain alpha-keto acid dehydrogenase subunit E2
545	 42.25	0	607240..608484	-	414	33241880	-	CpB0549	-	proton/sodium glutamate symport transporter
546	 43.81	+1	608484..609581	-	365	33241881	lpxK	CpB0550	-	tetraacyldisaccharide 4'-kinase
547	 38.60	0	609779..610576	-	265	33241882	spoU	CpB0551	-	tRNA methylase
548	 43.24	0	610564..611391	-	275	33241883	-	CpB0552	-	putative SAM dependent methyltransferase
549	 38.31	0	611394..611996	-	200	33241884	-	CpB0553	-	riboflavin synthase subunit alpha
550	 38.13	0	612252..612710	+	152	33241885	-	CpB0554	-	transcriptional regulator NrdR
551	 39.73	0	612735..613109	+	124	33241886	-	CpB0555	-	general stress protein 160
552	 36.48	-1	613145..613621	+	158	33241887	lspA	CpB0556	-	lipoprotein signal peptidase
553	 42.81	0	613667..615016	+	449	33241888	-	CpB0557	-	alanine/glycine transporter protein
554	 38.61	0	615155..615514	+	119	33241889	-	CpB0558	-	hypothetical protein
555	 38.36	0	615519..615836	+	105	33241890	-	CpB0559	-	hypothetical protein
556	 42.41	0	616027..618870	+	947	33241891	-	CpB0560	-	Omp11
557	 43.12	0	619016..624187	+	1723	33241892	-	CpB0561	-	outer membrane protein omp5
558	 39.67	0	624492..625328	+	278	33241893	-	CpB0562	-	adhesin B protein
559	 41.33	0	625325..626062	+	245	33241894	-	CpB0563	-	ABC transporter ATPase
560	 41.67	0	626041..626928	+	295	33241895	-	CpB0565	-	iron transport protein
561	 45.34	+1	626844..627851	-	335	33241896	obgE	CpB0564	-	GTPase ObgE
562	 45.10	+1	627952..628206	-	84	33241897	rpmA	CpB0566	-	50S ribosomal protein L27
563	 40.43	0	628231..628554	-	107	33241898	rplU	CpB0567	-	50S ribosomal protein L21
564	 41.81	0	628983..629513	+	176	161484687	ispF	CpB0568	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
565	 40.13	0	629510..630553	-	347	33241900	-	CpB0569	-	sulfite reductase [NADPH] flavoprotein alpha-component
566	 39.31	0	630574..630891	-	105	161484686	rpsJ	CpB0570	-	30S ribosomal protein S10
567	 41.73	0	630899..632983	-	694	33241902	-	CpB0571	-	elongation factor G
568	 42.19	0	633017..633490	-	157	33241903	-	CpB0572	-	30S ribosomal protein S7
569	 44.35	+1	633538..633909	-	123	33241904	rpsL	CpB0573	-	30S ribosomal protein S12
570	 32.20	-2	633969..634145	+	58	33241905	-	CpB0575	-	hypothetical protein
571	 40.26	0	634131..635069	-	312	33241906	-	CpB0574	-	hypothetical protein
572	 39.23	0	635128..635466	+	112	33241907	-	CpB0576	-	hypothetical protein
573	 40.66	0	635629..637566	+	645	33241908	-	CpB0577	-	carboxy-terminal proteinase precursor
574	 41.12	0	637644..638234	-	196	33241909	-	CpB0578	-	sulfur-rich protein
575	 42.55	0	638513..640183	-	556	33241910	-	CpB0579	-	60K cysteine-rich outer membrane protein precursor
576	 41.39	0	640350..640622	-	90	33241911	-	CpB0580	-	9K cysteine-rich outer membrane protein
577	 36.51	-1	641064..641252	+	62	33241912	-	CpB0581	-	hypothetical protein
578	 45.45	+1	641417..642934	-	505	33241913	gltX	CpB0582	-	glutamyl-tRNA synthetase
579	 39.48	0	643190..643726	-	178	33241914	-	CpB0583	-	early upstream orf EUO
580	 42.96	0	644237..645358	-	373	33241915	-	CpB0584	-	hypothetical protein
581	 43.35	0	645612..647378	-	588	33241916	recJ	CpB0585	-	ssDNA-specific exonuclease
582	 40.65	0	647464..651672	-	1402	33241917	-	CpB0586	-	bifunctional preprotein translocase subunit SecD/SecF
583	 43.42	0	651852..652952	-	366	33241918	-	CpB0587	-	hypothetical protein
584	 39.84	0	653463..654215	+	250	33241919	-	CpB0588	-	hypothetical protein
585	 40.02	0	654216..655142	+	308	33241920	-	CpB0589	-	phosphatidate cytidylyltransferase
586	 42.09	0	655139..655789	+	216	33241921	cmk	CpB0590	-	cytidylate kinase
587	 40.06	0	655786..656424	+	212	33241922	-	CpB0591	-	glycerol-3-phosphate acyltransferase
588	 41.28	0	656429..658114	+	561	33241923	argS	CpB0593	-	arginyl-tRNA synthetase
589	 45.10	+1	658068..659444	-	458	33241924	-	CpB0592	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
590	 46.56	+1	659674..661941	+	755	33241925	-	CpB0594	-	hypothetical protein
591	 41.14	0	662010..662726	-	238	33241926	-	CpB0595	-	hypothetical protein
592	 40.54	0	662713..663267	-	184	33241927	-	CpB0596	-	hypothetical protein
593	 39.92	0	663301..663816	-	171	33241928	bltD	CpB0597	-	spermine/spermidine acetyltransferase
594	 43.57	0	663813..664574	-	253	33241929	prfB	CpB0598	-	peptide chain release factor 2
595	 37.78	0	664821..665000	+	59	33241930	-	CpB0599	-	hypothetical protein
596	 37.18	-1	665062..665217	-	51	33241931	-	CpB0600	-	histone H3
597	 35.98	-1	665217..665480	+	87	33241932	-	CpB0601	-	hypothetical protein
598	 42.68	0	665728..666690	+	320	33241933	yaeI	CpB0602	-	putative phosphoesterase
599	 43.24	0	666683..667318	+	211	33241934	ispD	CpB0603	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
600	 44.28	+1	667315..668118	+	267	33241935	truA	CpB0605	-	tRNA pseudouridine synthase A
601	 39.39	0	668064..668756	-	230	33241936	-	CpB0604	-	putative phosphoglycolate phosphatase
602	 42.92	0	668825..669502	+	225	33241937	-	CpB0606	-	hypothetical protein
603	 36.63	-1	669740..670042	+	100	33241938	-	CpB0607	-	hypothetical protein
604	 42.37	0	670029..671123	+	364	33241939	atoS	CpB0608	-	AtoS
605	 44.01	+1	671184..673028	-	614	33241940	-	CpB0609	-	hypothetical protein
606	 44.73	+1	673324..674508	+	394	33241941	atoC	CpB0610	-	acetate metabolism regulatory protein
40.62	MEAN

3.18	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.