IslandPath Analysis: Chlamydophila pneumoniae TW-183



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.62   STD DEV: 3.18
Chlamydophila pneumoniae TW-183, complete genome - 1..1225935
1113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
464	 38.60	0	502346..502516	-	56	33241799	-	CpB0466	-	hypothetical protein
465	 42.56	0	502828..505611	-	927	33241800	-	CpB0467	-	outer membrane protein 5
466	 43.74	0	505774..508560	+	928	33241801	-	CpB0468	-	outer membrane protein 4
467	 43.88	+1	508818..510362	+	514	33241802	-	CpB0469	-	outer membrane protein 13
468	 44.32	+1	510733..513654	+	973	33241803	-	CpB0470	-	outer membrane protein 14
469	 45.08	+1	513681..516617	+	978	33241804	-	CpB0471	-	outer membrane protein 11
470	 40.61	0	516670..516834	-	54	33241805	-	CpB0472	-	hypothetical protein
471	 43.70	0	516955..518874	-	639	33241806	-	CpB0473	-	hypothetical protein
472	 42.91	0	519477..521366	-	629	33241807	-	CpB0474	-	hypothetical protein
473	 43.63	0	521734..523821	-	695	33241808	-	CpB0475	-	hypothetical protein
474	 40.74	0	524117..524548	-	143	33241809	-	CpB0476	-	hypothetical protein
475	 43.08	0	524490..525341	-	283	33241810	-	CpB0477	-	hypothetical protein
476	 45.01	+1	525342..525992	-	216	33241811	-	CpB0478	-	hypothetical protein
477	 43.44	0	526535..528553	-	672	33241812	-	CpB0479	-	hypothetical protein
478	 42.92	0	528689..529960	-	423	33241813	-	CpB0480	-	hypothetical protein
479	 42.92	0	529864..530343	-	159	33241814	-	CpB0481	-	hypothetical protein
480	 43.77	0	530369..530713	-	114	33241815	-	CpB0482	-	hypothetical protein
481	 41.52	0	530766..530936	-	56	33241816	-	CpB0483	-	hypothetical protein
482	 44.06	+1	531246..534041	+	931	33241817	-	CpB0484	-	outer membrane protein 11
483	 43.58	0	534080..536938	+	952	33241818	-	CpB0485	-	outer membrane protein 5
484	 39.84	0	537184..537936	+	250	33241819	-	CpB0486	-	outer membrane protein 10
485	 40.80	0	538041..538964	+	307	33241820	-	CpB0487	-	outer membrane protein 11
486	 44.87	+1	538858..540036	+	392	33241821	-	CpB0488	-	outer membrane protein
487	 41.46	0	540065..542905	+	946	33241822	-	CpB0489	-	outer membrane protein 11
488	 46.65	+1	543079..545406	-	775	33241823	-	CpB0490	-	hypothetical protein
489	 46.33	+1	545568..546914	-	448	33241824	-	CpB0491	-	hypothetical protein
490	 22.22	-2	546954..547115	-	53	33241825	-	CpB0492	-	hypothetical protein
491	 45.21	+1	547125..548858	-	577	33241826	-	CpB0493	-	hypothetical protein
492	 45.77	+1	549003..551165	-	720	33241827	-	CpB0494	-	glycogen branching enzyme
493	 45.76	+1	551176..552165	-	329	33241828	-	CpB0495	-	hypothetical protein
494	 43.05	0	552162..553427	-	421	33241829	-	CpB0496	-	hypothetical protein
495	 43.97	+1	553528..554946	-	472	33241830	-	CpB0497	-	GTP binding protein hflX
496	 42.19	0	554934..555746	-	270	33241831	-	CpB0498	-	putative metal dependent hydrolase
497	 44.44	+1	555968..556624	-	218	33241832	-	CpB0499	-	hypothetical protein
498	 42.18	0	558279..559013	-	244	33241833	-	CpB0502	-	arginine-binding periplasmic protein 2 precursor
499	 43.23	0	559187..562288	+	1033	33241834	-	CpB0503	-	hypothetical protein
500	 48.83	+2	562291..563148	+	285	33241835	-	CpB0504	-	3-deoxy-7-phosphoheptulonate synthase
501	 41.03	0	563359..563553	+	64	33241836	-	CpB0505	-	hypothetical protein
502	 45.17	+1	563723..565057	-	444	33241837	-	CpB0506	-	prolin permease protein
503	 44.72	+1	565430..566983	-	517	33241838	-	CpB0507	-	hypothetical protein
504	 39.64	0	567085..567417	-	110	33241839	-	CpB0508	-	histidine triad homology
505	 39.63	0	567414..568286	-	290	33241840	-	CpB0509	-	hypothetical protein
506	 43.88	+1	568600..570657	+	685	33241841	-	CpB0510	-	hypothetical protein
507	 42.54	0	570654..571793	-	379	33241842	-	CpB0511	-	hypothetical protein
508	 42.95	0	571973..572128	+	51	33241843	-	CpB0512	-	hypothetical protein
509	 44.44	+1	572173..572325	-	50	33241844	-	CpB0513	-	hypothetical protein
510	 45.50	+1	572464..572685	-	73	33241845	-	CpB0514	-	hypothetical protein
511	 43.44	0	572852..574117	+	421	33241846	-	CpB0515	-	L,L-diaminopimelate aminotransferase
512	 40.76	0	574114..575136	+	340	33241847	-	CpB0516	-	hypothetical protein
513	 37.73	0	575138..575410	-	90	33241848	-	CpB0517	-	hypothetical protein
514	 43.29	0	575403..576356	-	317	33241849	-	CpB0518	-	hypothetical protein
515	 46.20	+1	576524..577681	-	385	33241850	-	CpB0519	-	hypothetical protein
516	 45.40	+1	577981..579687	+	568	33241851	-	CpB0520	-	prolyl-tRNA synthetase
517	 40.03	0	579752..580975	+	407	33241852	hrcA	CpB0521	-	heat-inducible transcription repressor
518	 38.20	0	580972..581526	+	184	33241853	grpE	CpB0522	-	hypothetical protein
519	 42.21	0	581556..583538	+	660	33241854	dnaK	CpB0523	-	molecular chaperone DnaK
520	 38.89	0	583575..583808	-	77	33241855	-	CpB0524	-	hypothetical protein
521	 42.98	0	583809..585839	+	676	33241856	-	CpB0525	-	proteins of ribonuclease
522	 46.02	+1	585841..586431	+	196	33241857	-	CpB0526	-	N-methylpurine-DNA glycosylase
523	 40.74	0	586383..587165	+	260	33241858	-	CpB0527	-	hypothetical protein
524	 40.61	0	587283..587447	+	54	33241859	-	CpB0528	-	hypothetical protein
525	 38.89	0	587464..587625	+	53	33241860	-	CpB0529	-	hypothetical protein
526	 38.78	0	587657..588133	+	158	33241861	-	CpB0530	-	hypothetical protein
527	 43.99	+1	588135..589298	+	387	33241862	-	CpB0531	-	hemolysin C
528	 39.60	0	589463..589813	+	116	33241863	-	CpB0532	-	sigma F regulatory factor
529	 44.71	+1	589875..591737	+	620	33241864	-	CpB0533	-	hypothetical protein
530	 42.77	0	591924..593078	+	384	33241865	-	CpB0534	-	hypothetical protein
531	 45.41	+1	593051..593845	+	264	33241866	-	CpB0535	-	hypothetical protein
532	 44.68	+1	593793..594506	+	237	33241867	ubiE	CpB0536	-	ubiquinone/menaquinone biosynthesis methyltransferase
533	 45.31	+1	594574..596193	-	539	33241868	-	CpB0537	-	hypothetical protein
534	 45.12	+1	596114..596953	-	279	33241869	-	CpB0538	-	hypothetical protein
535	 38.36	0	597151..598125	-	324	33241870	-	CpB0539	-	hypothetical protein
536	 43.51	0	598223..599008	-	261	33241871	dapF	CpB0540	-	diaminopimelate epimerase
537	 40.45	0	598965..599540	-	191	33241872	clp	CpB0541	-	ATP-dependent Clp protease proteolytic subunit
538	 41.67	0	599560..601119	-	519	33241873	glyA	CpB0542	-	serine hydroxymethyltransferase
539	 42.41	0	601309..601980	+	223	33241874	hemD	CpB0543	-	uroporphyrinogen-III synthase
540	 45.35	+1	602045..602377	+	110	33241875	-	CpB0544	-	hypothetical protein
541	 41.76	0	602425..603504	+	359	33241876	-	CpB0545	-	hypothetical protein
542	 37.91	0	603844..604608	+	254	33241877	-	CpB0546	-	hypothetical protein
543	 41.11	0	605029..606018	-	329	33241878	kpsF	CpB0547	-	KpsF
544	 44.08	+1	606045..607226	-	393	33241879	-	CpB0548	-	branched-chain alpha-keto acid dehydrogenase subunit E2
545	 42.25	0	607240..608484	-	414	33241880	-	CpB0549	-	proton/sodium glutamate symport transporter
546	 43.81	+1	608484..609581	-	365	33241881	lpxK	CpB0550	-	tetraacyldisaccharide 4'-kinase
547	 38.60	0	609779..610576	-	265	33241882	spoU	CpB0551	-	tRNA methylase
548	 43.24	0	610564..611391	-	275	33241883	-	CpB0552	-	putative SAM dependent methyltransferase
549	 38.31	0	611394..611996	-	200	33241884	-	CpB0553	-	riboflavin synthase subunit alpha
550	 38.13	0	612252..612710	+	152	33241885	-	CpB0554	-	transcriptional regulator NrdR
551	 39.73	0	612735..613109	+	124	33241886	-	CpB0555	-	general stress protein 160
552	 36.48	-1	613145..613621	+	158	33241887	lspA	CpB0556	-	lipoprotein signal peptidase
553	 42.81	0	613667..615016	+	449	33241888	-	CpB0557	-	alanine/glycine transporter protein
554	 38.61	0	615155..615514	+	119	33241889	-	CpB0558	-	hypothetical protein
555	 38.36	0	615519..615836	+	105	33241890	-	CpB0559	-	hypothetical protein
556	 42.41	0	616027..618870	+	947	33241891	-	CpB0560	-	Omp11
557	 43.12	0	619016..624187	+	1723	33241892	-	CpB0561	-	outer membrane protein omp5
558	 39.67	0	624492..625328	+	278	33241893	-	CpB0562	-	adhesin B protein
559	 41.33	0	625325..626062	+	245	33241894	-	CpB0563	-	ABC transporter ATPase
560	 41.67	0	626041..626928	+	295	33241895	-	CpB0565	-	iron transport protein
561	 45.34	+1	626844..627851	-	335	33241896	obgE	CpB0564	-	GTPase ObgE
562	 45.10	+1	627952..628206	-	84	33241897	rpmA	CpB0566	-	50S ribosomal protein L27
563	 40.43	0	628231..628554	-	107	33241898	rplU	CpB0567	-	50S ribosomal protein L21
40.62	MEAN

3.18	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.