IslandPath Analysis: Chlamydophila pneumoniae TW-183



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.62   STD DEV: 3.18
Chlamydophila pneumoniae TW-183, complete genome - 1..1225935
1113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
399	 40.66	0	434816..435634	-	272	33241734	-	CpB0400	-	hypothetical protein
400	 42.70	0	435631..436644	-	337	33241735	ruvB	CpB0402	-	Holliday junction DNA helicase B
401	 37.10	-1	437007..437192	-	61	33241736	-	CpB0403	-	hypothetical protein
402	 40.66	0	437314..437886	+	190	33241737	dcd	CpB0404	-	deoxycytidine triphosphate deaminase
403	 41.61	0	437780..438226	+	148	33241738	-	CpB0405	-	hypothetical protein
404	 39.81	0	438236..439471	+	411	33241739	-	CpB0406	-	hemolysin
405	 37.20	-1	439464..440678	+	404	33241740	-	CpB0407	-	hypothetical protein
406	 44.62	+1	440738..441853	-	371	33241741	nifS	CpB0408	-	nitrogen fixation protein
407	 43.90	+1	441878..442615	-	245	33241742	-	CpB0409	-	hypothetical protein
408	 29.09	-2	442679..442843	-	54	33241743	-	CpB0410	-	hypothetical protein
409	 32.85	-2	442954..443160	-	68	33241744	-	CpB0411	-	hypothetical protein
410	 40.97	0	443268..444026	+	252	33241745	-	CpB0412	-	hypothetical protein
411	 41.09	0	444036..444809	+	257	33241746	-	CpB0413	-	hypothetical protein
412	 46.06	+1	444992..445384	-	130	33241747	-	CpB0414	-	beta-lactamase regulatory protein
413	 40.81	0	445385..446494	-	369	33241748	-	CpB0415	-	A/G-specific adenine glycosylase
414	 43.63	0	446515..447213	+	232	33241749	sfhB	CpB0416	-	pseudouridine synthetase
415	 45.13	+1	447368..448333	-	321	33241750	-	CpB0417	-	hypothetical protein
416	 48.33	+2	448463..449209	-	248	33241751	-	CpB0418	-	hypothetical protein
417	 33.92	-2	449281..449451	-	56	33241752	-	CpB0419	-	hypothetical protein
418	 43.78	0	449469..450368	+	299	33241753	-	CpB0421	-	enoyl-(acyl carrier protein) reductase
419	 41.81	0	450355..451227	-	290	33241754	-	CpB0420	-	putative had hydrolase/phosphatase
420	 42.19	0	451227..451418	-	63	33241755	-	CpB0422	-	hypothetical protein
421	 35.35	-1	451415..451711	-	98	33241756	-	CpB0423	-	hypothetical protein
422	 35.83	-1	451605..452084	+	159	33241757	-	CpB0424	-	hypothetical protein
423	 37.45	0	452145..452630	+	161	33241758	-	CpB0425	-	hypothetical protein
424	 41.77	0	452638..453336	+	232	33241759	-	CpB0426	-	DNA polymerase III subunit epsilon
425	 42.44	0	453333..454112	+	259	33241760	-	CpB0427	-	hypothetical protein
426	 41.36	0	454090..454749	+	219	33241761	-	CpB0429	-	hypothetical protein
427	 40.15	0	454724..456703	-	659	33241762	hetA	CpB0428	-	HetA
428	 42.46	0	456669..457643	-	324	33241763	-	CpB0430	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
429	 41.92	0	457718..458998	-	426	33241764	-	CpB0431	-	hypothetical protein
430	 40.26	0	459054..459356	-	100	33241765	-	CpB0432	-	integration host factor beta chain
431	 43.02	0	459741..460535	-	264	33241766	-	CpB0433	-	N-acetylmuramoyl-L-alanine amidase 50K precursor
432	 42.70	0	460450..461901	-	483	33241767	murE	CpB0434	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
433	 44.24	+1	462374..464335	-	653	33241768	-	CpB0435	-	penicillin-binding protein 2
434	 35.07	-1	464322..464609	-	95	33241769	-	CpB0436	-	hypothetical protein
435	 42.73	0	464606..465499	-	297	33241770	mraW	CpB0437	-	S-adenosyl-methyltransferase MraW
436	 39.19	0	465743..466288	+	181	33241771	-	CpB0438	-	hypothetical protein
437	 39.16	0	466292..466720	+	142	33241772	-	CpB0439	-	hypothetical protein
438	 37.77	0	467113..468465	+	450	33241773	dnaA	CpB0440	-	chromosomal replication initiation protein
439	 42.52	0	468481..469068	+	195	33241774	-	CpB0442	-	hypothetical protein
440	 42.31	0	469034..469612	-	192	33241775	-	CpB0441	-	hypothetical protein
441	 44.25	+1	469708..471219	+	503	33241776	nrqB	CpB0443	-	Na(+)-translocating NADH-quinone reductase subunit B
442	 41.74	0	471223..472185	+	320	33241777	-	CpB0444	-	Na(+)-translocating NADH-quinone reductase subunit C
443	 40.03	0	472182..472823	+	213	33241778	nqrD	CpB0445	-	Na(+)-translocating NADH-quinone reductase subunit D
444	 43.71	0	472827..473597	+	256	33241779	nqr5	CpB0446	-	Na(+)-translocating NADH-quinone reductase subunit E
445	 41.07	0	473649..473984	-	111	33241780	-	CpB0447	-	hypothetical protein
446	 44.44	+1	474012..474317	-	101	33241781	-	CpB0448	-	hypothetical protein
447	 42.45	0	474427..474777	-	116	33241782	-	CpB0449	-	glycine cleavage system protein H
448	 41.80	0	474774..476852	-	692	33241783	-	CpB0450	-	hypothetical protein
449	 41.51	0	476973..478403	-	476	33241784	-	CpB0451	-	putative phospholipase D
450	 42.92	0	478400..479119	-	239	33241785	-	CpB0452	-	putative lipoate protein ligase
451	 43.70	0	479317..481854	+	845	33241786	clpC	CpB0454	-	class III stress response-related ATPase
452	 43.65	0	481832..482917	-	361	33241787	trmU	CpB0453	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
453	 41.27	0	483141..483581	+	146	33241788	-	CpB0455	-	hypothetical protein
454	 41.94	0	483606..484244	+	212	33241789	-	CpB0456	-	hypothetical protein
455	 41.01	0	484392..485342	+	316	33241790	-	CpB0457	-	hypothetical protein
456	 45.66	+1	485514..486032	+	172	33241791	-	CpB0458	-	hypothetical protein
457	 46.97	+1	486230..487483	+	417	33241792	-	CpB0459	-	hypothetical protein
458	 44.72	+1	487788..492011	+	1407	33241793	-	CpB0460	-	Omp11
459	 41.21	0	492027..492191	-	54	33241794	-	CpB0461	-	hypothetical protein
460	 44.61	+1	492273..495083	+	936	33241795	-	CpB0462	-	Omp5
461	 44.68	+1	495127..497919	+	930	33241796	-	CpB0463	-	outer membrane protein 11
462	 43.88	+1	498069..500855	+	928	33241797	-	CpB0464	-	outer membrane protein 10
463	 40.81	0	501196..502305	-	369	33241798	-	CpB0465	-	hypothetical protein
464	 38.60	0	502346..502516	-	56	33241799	-	CpB0466	-	hypothetical protein
465	 42.56	0	502828..505611	-	927	33241800	-	CpB0467	-	outer membrane protein 5
466	 43.74	0	505774..508560	+	928	33241801	-	CpB0468	-	outer membrane protein 4
467	 43.88	+1	508818..510362	+	514	33241802	-	CpB0469	-	outer membrane protein 13
468	 44.32	+1	510733..513654	+	973	33241803	-	CpB0470	-	outer membrane protein 14
469	 45.08	+1	513681..516617	+	978	33241804	-	CpB0471	-	outer membrane protein 11
470	 40.61	0	516670..516834	-	54	33241805	-	CpB0472	-	hypothetical protein
471	 43.70	0	516955..518874	-	639	33241806	-	CpB0473	-	hypothetical protein
472	 42.91	0	519477..521366	-	629	33241807	-	CpB0474	-	hypothetical protein
473	 43.63	0	521734..523821	-	695	33241808	-	CpB0475	-	hypothetical protein
474	 40.74	0	524117..524548	-	143	33241809	-	CpB0476	-	hypothetical protein
475	 43.08	0	524490..525341	-	283	33241810	-	CpB0477	-	hypothetical protein
476	 45.01	+1	525342..525992	-	216	33241811	-	CpB0478	-	hypothetical protein
477	 43.44	0	526535..528553	-	672	33241812	-	CpB0479	-	hypothetical protein
478	 42.92	0	528689..529960	-	423	33241813	-	CpB0480	-	hypothetical protein
479	 42.92	0	529864..530343	-	159	33241814	-	CpB0481	-	hypothetical protein
480	 43.77	0	530369..530713	-	114	33241815	-	CpB0482	-	hypothetical protein
481	 41.52	0	530766..530936	-	56	33241816	-	CpB0483	-	hypothetical protein
482	 44.06	+1	531246..534041	+	931	33241817	-	CpB0484	-	outer membrane protein 11
483	 43.58	0	534080..536938	+	952	33241818	-	CpB0485	-	outer membrane protein 5
484	 39.84	0	537184..537936	+	250	33241819	-	CpB0486	-	outer membrane protein 10
485	 40.80	0	538041..538964	+	307	33241820	-	CpB0487	-	outer membrane protein 11
486	 44.87	+1	538858..540036	+	392	33241821	-	CpB0488	-	outer membrane protein
487	 41.46	0	540065..542905	+	946	33241822	-	CpB0489	-	outer membrane protein 11
488	 46.65	+1	543079..545406	-	775	33241823	-	CpB0490	-	hypothetical protein
489	 46.33	+1	545568..546914	-	448	33241824	-	CpB0491	-	hypothetical protein
490	 22.22	-2	546954..547115	-	53	33241825	-	CpB0492	-	hypothetical protein
491	 45.21	+1	547125..548858	-	577	33241826	-	CpB0493	-	hypothetical protein
492	 45.77	+1	549003..551165	-	720	33241827	-	CpB0494	-	glycogen branching enzyme
493	 45.76	+1	551176..552165	-	329	33241828	-	CpB0495	-	hypothetical protein
494	 43.05	0	552162..553427	-	421	33241829	-	CpB0496	-	hypothetical protein
495	 43.97	+1	553528..554946	-	472	33241830	-	CpB0497	-	GTP binding protein hflX
496	 42.19	0	554934..555746	-	270	33241831	-	CpB0498	-	putative metal dependent hydrolase
497	 44.44	+1	555968..556624	-	218	33241832	-	CpB0499	-	hypothetical protein
498	 42.18	0	558279..559013	-	244	33241833	-	CpB0502	-	arginine-binding periplasmic protein 2 precursor
40.62	MEAN

3.18	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.