IslandPath Analysis: Chlamydophila pneumoniae TW-183



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.62   STD DEV: 3.18
Chlamydophila pneumoniae TW-183, complete genome - 1..1225935
1113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
367	 44.03	+1	401419..402858	-	479	33241702	-	CpB0369	-	6-phosphogluconate dehydrogenase
368	 41.45	0	402879..404147	-	422	33241703	-	CpB0370	-	tyrosyl-tRNA synthetase
369	 48.63	+2	404270..404452	-	60	33241704	-	CpB0371	-	hypothetical protein
370	 44.19	+1	404552..405325	-	257	33241705	-	CpB0372	-	RNA polymerase sigma factor sigma-28
371	 41.11	0	405440..407188	-	582	33241706	-	CpB0373	-	type III secretion system protein
372	 44.20	+1	407466..407741	+	91	33241707	-	CpB0374	-	ferredoxin IV
373	 41.26	0	408013..409047	+	344	33241708	-	CpB0375	-	hypothetical protein
374	 29.41	-2	409199..409351	+	50	33241709	-	CpB0376	-	hypothetical protein
375	 44.23	+1	409476..409943	+	155	33241710	-	CpB0377	-	hypothetical protein
376	 44.14	+1	410209..410430	-	73	33241711	-	CpB0378	-	hypothetical protein
377	 44.99	+1	410602..411339	+	245	33241712	-	CpB0379	-	hypothetical protein
378	 42.40	0	411269..411610	+	113	33241713	-	CpB0380	-	hypothetical protein
379	 46.17	+1	411851..413065	+	404	33241714	-	CpB0381	-	hypothetical protein
380	 44.80	+1	413300..414415	+	371	33241715	-	CpB0382	-	hypothetical protein
381	 41.11	0	414647..415006	+	119	33241716	-	CpB0383	-	hypothetical protein
382	 41.19	0	415187..415504	+	105	33241717	-	CpB0384	-	hypothetical protein
383	 43.59	0	415880..417721	+	613	33241718	aarC	CpB0385	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
384	 46.87	+1	417778..418464	+	228	33241719	-	CpB0386	-	hypothetical protein
385	 42.37	0	418621..419118	+	165	33241720	-	CpB0387	-	hypothetical protein
386	 38.51	0	419354..419797	+	147	33241721	-	CpB0388	-	hypothetical protein
387	 44.47	+1	419844..420938	-	364	33241722	-	CpB0389	-	dihydrolipoamide acetyltransferase
388	 42.17	0	420942..423668	-	908	33241723	kgd	CpB0390	-	alpha-ketoglutarate decarboxylase
389	 43.62	0	423822..424268	+	148	33241724	-	CpB0391	-	hypothetical protein
390	 44.59	+1	424234..425379	+	381	33241725	-	CpB0392	-	coproporphyrinogen III oxidase
391	 44.52	+1	425534..427312	-	592	33241726	-	CpB0393	-	hypothetical protein
392	 45.19	+1	427533..428249	-	238	33241727	-	CpB0394	-	hypothetical protein
393	 42.41	0	428246..429193	-	315	33241728	-	CpB0395	-	hypothetical protein
394	 42.97	0	429359..429877	-	172	33241729	-	CpB0396	-	putative histone-like protein 2
395	 41.93	0	430019..431518	-	499	33241730	-	CpB0397	-	leucyl aminopeptidase
396	 41.61	0	431543..432025	-	160	33241731	-	CpB0398	-	single-strand DNA-binding protein
397	 40.12	0	432196..432696	-	166	33241732	-	CpB0399	-	hypothetical protein
398	 43.16	0	432829..434823	+	664	33241733	-	CpB0401	-	glycogen hydrolase (debranching)
399	 40.66	0	434816..435634	-	272	33241734	-	CpB0400	-	hypothetical protein
400	 42.70	0	435631..436644	-	337	33241735	ruvB	CpB0402	-	Holliday junction DNA helicase B
401	 37.10	-1	437007..437192	-	61	33241736	-	CpB0403	-	hypothetical protein
402	 40.66	0	437314..437886	+	190	33241737	dcd	CpB0404	-	deoxycytidine triphosphate deaminase
403	 41.61	0	437780..438226	+	148	33241738	-	CpB0405	-	hypothetical protein
404	 39.81	0	438236..439471	+	411	33241739	-	CpB0406	-	hemolysin
405	 37.20	-1	439464..440678	+	404	33241740	-	CpB0407	-	hypothetical protein
406	 44.62	+1	440738..441853	-	371	33241741	nifS	CpB0408	-	nitrogen fixation protein
407	 43.90	+1	441878..442615	-	245	33241742	-	CpB0409	-	hypothetical protein
408	 29.09	-2	442679..442843	-	54	33241743	-	CpB0410	-	hypothetical protein
409	 32.85	-2	442954..443160	-	68	33241744	-	CpB0411	-	hypothetical protein
410	 40.97	0	443268..444026	+	252	33241745	-	CpB0412	-	hypothetical protein
411	 41.09	0	444036..444809	+	257	33241746	-	CpB0413	-	hypothetical protein
412	 46.06	+1	444992..445384	-	130	33241747	-	CpB0414	-	beta-lactamase regulatory protein
413	 40.81	0	445385..446494	-	369	33241748	-	CpB0415	-	A/G-specific adenine glycosylase
414	 43.63	0	446515..447213	+	232	33241749	sfhB	CpB0416	-	pseudouridine synthetase
415	 45.13	+1	447368..448333	-	321	33241750	-	CpB0417	-	hypothetical protein
416	 48.33	+2	448463..449209	-	248	33241751	-	CpB0418	-	hypothetical protein
417	 33.92	-2	449281..449451	-	56	33241752	-	CpB0419	-	hypothetical protein
418	 43.78	0	449469..450368	+	299	33241753	-	CpB0421	-	enoyl-(acyl carrier protein) reductase
419	 41.81	0	450355..451227	-	290	33241754	-	CpB0420	-	putative had hydrolase/phosphatase
420	 42.19	0	451227..451418	-	63	33241755	-	CpB0422	-	hypothetical protein
421	 35.35	-1	451415..451711	-	98	33241756	-	CpB0423	-	hypothetical protein
422	 35.83	-1	451605..452084	+	159	33241757	-	CpB0424	-	hypothetical protein
423	 37.45	0	452145..452630	+	161	33241758	-	CpB0425	-	hypothetical protein
424	 41.77	0	452638..453336	+	232	33241759	-	CpB0426	-	DNA polymerase III subunit epsilon
425	 42.44	0	453333..454112	+	259	33241760	-	CpB0427	-	hypothetical protein
426	 41.36	0	454090..454749	+	219	33241761	-	CpB0429	-	hypothetical protein
427	 40.15	0	454724..456703	-	659	33241762	hetA	CpB0428	-	HetA
428	 42.46	0	456669..457643	-	324	33241763	-	CpB0430	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
429	 41.92	0	457718..458998	-	426	33241764	-	CpB0431	-	hypothetical protein
430	 40.26	0	459054..459356	-	100	33241765	-	CpB0432	-	integration host factor beta chain
431	 43.02	0	459741..460535	-	264	33241766	-	CpB0433	-	N-acetylmuramoyl-L-alanine amidase 50K precursor
432	 42.70	0	460450..461901	-	483	33241767	murE	CpB0434	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
433	 44.24	+1	462374..464335	-	653	33241768	-	CpB0435	-	penicillin-binding protein 2
434	 35.07	-1	464322..464609	-	95	33241769	-	CpB0436	-	hypothetical protein
435	 42.73	0	464606..465499	-	297	33241770	mraW	CpB0437	-	S-adenosyl-methyltransferase MraW
436	 39.19	0	465743..466288	+	181	33241771	-	CpB0438	-	hypothetical protein
437	 39.16	0	466292..466720	+	142	33241772	-	CpB0439	-	hypothetical protein
438	 37.77	0	467113..468465	+	450	33241773	dnaA	CpB0440	-	chromosomal replication initiation protein
439	 42.52	0	468481..469068	+	195	33241774	-	CpB0442	-	hypothetical protein
440	 42.31	0	469034..469612	-	192	33241775	-	CpB0441	-	hypothetical protein
441	 44.25	+1	469708..471219	+	503	33241776	nrqB	CpB0443	-	Na(+)-translocating NADH-quinone reductase subunit B
442	 41.74	0	471223..472185	+	320	33241777	-	CpB0444	-	Na(+)-translocating NADH-quinone reductase subunit C
443	 40.03	0	472182..472823	+	213	33241778	nqrD	CpB0445	-	Na(+)-translocating NADH-quinone reductase subunit D
444	 43.71	0	472827..473597	+	256	33241779	nqr5	CpB0446	-	Na(+)-translocating NADH-quinone reductase subunit E
445	 41.07	0	473649..473984	-	111	33241780	-	CpB0447	-	hypothetical protein
446	 44.44	+1	474012..474317	-	101	33241781	-	CpB0448	-	hypothetical protein
447	 42.45	0	474427..474777	-	116	33241782	-	CpB0449	-	glycine cleavage system protein H
448	 41.80	0	474774..476852	-	692	33241783	-	CpB0450	-	hypothetical protein
449	 41.51	0	476973..478403	-	476	33241784	-	CpB0451	-	putative phospholipase D
450	 42.92	0	478400..479119	-	239	33241785	-	CpB0452	-	putative lipoate protein ligase
451	 43.70	0	479317..481854	+	845	33241786	clpC	CpB0454	-	class III stress response-related ATPase
452	 43.65	0	481832..482917	-	361	33241787	trmU	CpB0453	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
453	 41.27	0	483141..483581	+	146	33241788	-	CpB0455	-	hypothetical protein
454	 41.94	0	483606..484244	+	212	33241789	-	CpB0456	-	hypothetical protein
455	 41.01	0	484392..485342	+	316	33241790	-	CpB0457	-	hypothetical protein
456	 45.66	+1	485514..486032	+	172	33241791	-	CpB0458	-	hypothetical protein
457	 46.97	+1	486230..487483	+	417	33241792	-	CpB0459	-	hypothetical protein
458	 44.72	+1	487788..492011	+	1407	33241793	-	CpB0460	-	Omp11
459	 41.21	0	492027..492191	-	54	33241794	-	CpB0461	-	hypothetical protein
460	 44.61	+1	492273..495083	+	936	33241795	-	CpB0462	-	Omp5
461	 44.68	+1	495127..497919	+	930	33241796	-	CpB0463	-	outer membrane protein 11
462	 43.88	+1	498069..500855	+	928	33241797	-	CpB0464	-	outer membrane protein 10
463	 40.81	0	501196..502305	-	369	33241798	-	CpB0465	-	hypothetical protein
464	 38.60	0	502346..502516	-	56	33241799	-	CpB0466	-	hypothetical protein
465	 42.56	0	502828..505611	-	927	33241800	-	CpB0467	-	outer membrane protein 5
466	 43.74	0	505774..508560	+	928	33241801	-	CpB0468	-	outer membrane protein 4
40.62	MEAN

3.18	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.