IslandPath Analysis: Chlamydophila pneumoniae TW-183



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.62   STD DEV: 3.18
Chlamydophila pneumoniae TW-183, complete genome - 1..1225935
1113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
320	 38.29	0	350986..351852	-	288	33241655	-	CpB0320	-	prolipoprotein diacylglyceryl transferase
321	 37.94	0	351938..352393	+	151	33241656	-	CpB0321	-	hypothetical protein
322	 42.28	0	352404..352772	+	122	33241657	acpS	CpB0323	-	4'-phosphopantetheinyl transferase
323	 41.56	0	352764..353699	-	311	33241658	-	CpB0322	-	thioredoxin reductase
324	 31.58	-2	354164..354334	+	56	33241659	-	CpB0324	-	hypothetical protein
325	 36.95	-1	354391..356133	+	580	33241660	rpsA	CpB0325	-	30S ribosomal protein S1
326	 37.16	-1	356234..357538	+	434	33241661	nusA	CpB0326	-	transcription elongation factor NusA
327	 40.88	0	357477..360167	+	896	33241662	infB	CpB0327	-	translation initiation factor IF-2
328	 34.99	-1	360181..360543	+	120	33241663	rbfA	CpB0328	-	ribosome-binding factor A
329	 41.10	0	360589..361296	+	235	33241664	truB	CpB0329	-	tRNA pseudouridine synthase B
330	 38.98	0	361280..362200	+	306	33241665	ribC	CpB0331	-	bifunctional riboflavin kinase/FMN adenylyltransferase
331	 40.00	0	362178..363272	-	364	33241666	-	CpB0330	-	translation-associated GTPase
332	 37.21	-1	363663..364745	+	360	33241667	-	CpB0332	-	type III secretion system protein
333	 42.80	0	364745..366877	+	710	33241668	lcrD	CpB0333	-	low calcium response D
334	 43.58	0	366906..368105	+	399	33241669	copN	CpB0334	-	CopN
335	 41.44	0	368122..368565	+	147	33241670	scc1	CpB0335	-	Scc1
336	 40.42	0	368562..370142	+	526	33241671	-	CpB0336	-	4-alpha-glucanotransferase
337	 37.04	-1	370359..370628	+	89	33241672	rpmB	CpB0337	-	50S ribosomal protein L28
338	 44.05	+1	370655..372409	+	584	33241673	-	CpB0338	-	hypothetical protein
339	 35.40	-1	372502..373563	+	353	33241674	-	CpB0339	-	putative phopholipase D
340	 39.83	0	373613..374089	-	158	33241675	-	CpB0340	-	hypothetical protein
341	 45.80	+1	374112..375851	-	579	33241676	-	CpB0341	-	hypothetical protein
342	 39.12	0	376211..376504	-	97	33241677	ltuB	CpB0342	-	LtuB
343	 39.34	0	376725..377240	+	171	33241678	-	CpB0343	-	hypothetical protein
344	 46.46	+1	377231..378091	+	286	33241679	-	CpB0344	-	methenyltetrahydrofolate cyclohydrolase
345	 40.63	0	378064..379008	+	314	33241680	apbE	CpB0346	-	thiamine biosynthesis lipoprotein precursor
346	 42.97	0	378986..379483	-	165	33241681	smpB	CpB0345	-	SsrA-binding protein
347	 40.33	0	379692..380792	+	366	33241682	-	CpB0347	-	DNA polymerase III subunit beta
348	 40.08	0	382036..383013	+	325	33241683	-	CpB0351	-	hypothetical protein
349	 40.30	0	382970..384835	-	621	33241684	-	CpB0350	-	putative metalloproteinase
350	 40.26	0	384848..385987	-	379	33241685	-	CpB0352	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
351	 36.41	-1	386116..387090	-	324	33241686	-	CpB0353	-	putative integral membrane protein
352	 39.16	0	387090..388445	-	451	33241687	-	CpB0354	-	putative integral membrane protein
353	 40.90	0	388439..389218	-	259	33241688	-	CpB0355	-	ABC transporter
354	 40.02	0	389202..390173	-	323	33241689	-	CpB0356	-	periplasmic substrate binding protein TroA
355	 22.06	-2	390301..390504	+	67	33241690	-	CpB0357	-	hypothetical protein
356	 39.84	0	390681..391187	+	168	33241691	-	CpB0358	-	hypothetical protein
357	 40.44	0	391388..392935	+	515	33241692	-	CpB0359	-	ATP/ADP-transporter
358	 37.78	0	393053..394333	+	426	33241693	-	CpB0360	-	hypothetical protein
359	 23.17	-2	394393..394638	+	81	33241694	-	CpB0361	-	hypothetical protein
360	 37.80	0	394667..396010	+	447	33241695	-	CpB0362	-	hypothetical protein
361	 39.02	0	396088..397389	-	433	33241696	-	CpB0363	-	hypothetical protein
362	 38.14	0	397606..397959	-	117	33241697	-	CpB0364	-	hypothetical protein
363	 38.26	0	397966..398817	-	283	33241698	-	CpB0365	-	hypothetical protein
364	 33.90	-2	399075..399251	-	58	33241699	-	CpB0366	-	hypothetical protein
365	 37.43	-1	399327..399497	+	56	33241700	-	CpB0367	-	hypothetical protein
366	 40.85	0	399512..401320	+	602	33241701	-	CpB0368	-	GTP-binding protein LepA
367	 44.03	+1	401419..402858	-	479	33241702	-	CpB0369	-	6-phosphogluconate dehydrogenase
368	 41.45	0	402879..404147	-	422	33241703	-	CpB0370	-	tyrosyl-tRNA synthetase
369	 48.63	+2	404270..404452	-	60	33241704	-	CpB0371	-	hypothetical protein
370	 44.19	+1	404552..405325	-	257	33241705	-	CpB0372	-	RNA polymerase sigma factor sigma-28
371	 41.11	0	405440..407188	-	582	33241706	-	CpB0373	-	type III secretion system protein
372	 44.20	+1	407466..407741	+	91	33241707	-	CpB0374	-	ferredoxin IV
373	 41.26	0	408013..409047	+	344	33241708	-	CpB0375	-	hypothetical protein
374	 29.41	-2	409199..409351	+	50	33241709	-	CpB0376	-	hypothetical protein
375	 44.23	+1	409476..409943	+	155	33241710	-	CpB0377	-	hypothetical protein
376	 44.14	+1	410209..410430	-	73	33241711	-	CpB0378	-	hypothetical protein
377	 44.99	+1	410602..411339	+	245	33241712	-	CpB0379	-	hypothetical protein
378	 42.40	0	411269..411610	+	113	33241713	-	CpB0380	-	hypothetical protein
379	 46.17	+1	411851..413065	+	404	33241714	-	CpB0381	-	hypothetical protein
380	 44.80	+1	413300..414415	+	371	33241715	-	CpB0382	-	hypothetical protein
381	 41.11	0	414647..415006	+	119	33241716	-	CpB0383	-	hypothetical protein
382	 41.19	0	415187..415504	+	105	33241717	-	CpB0384	-	hypothetical protein
383	 43.59	0	415880..417721	+	613	33241718	aarC	CpB0385	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
384	 46.87	+1	417778..418464	+	228	33241719	-	CpB0386	-	hypothetical protein
385	 42.37	0	418621..419118	+	165	33241720	-	CpB0387	-	hypothetical protein
386	 38.51	0	419354..419797	+	147	33241721	-	CpB0388	-	hypothetical protein
387	 44.47	+1	419844..420938	-	364	33241722	-	CpB0389	-	dihydrolipoamide acetyltransferase
388	 42.17	0	420942..423668	-	908	33241723	kgd	CpB0390	-	alpha-ketoglutarate decarboxylase
389	 43.62	0	423822..424268	+	148	33241724	-	CpB0391	-	hypothetical protein
390	 44.59	+1	424234..425379	+	381	33241725	-	CpB0392	-	coproporphyrinogen III oxidase
391	 44.52	+1	425534..427312	-	592	33241726	-	CpB0393	-	hypothetical protein
392	 45.19	+1	427533..428249	-	238	33241727	-	CpB0394	-	hypothetical protein
393	 42.41	0	428246..429193	-	315	33241728	-	CpB0395	-	hypothetical protein
394	 42.97	0	429359..429877	-	172	33241729	-	CpB0396	-	putative histone-like protein 2
395	 41.93	0	430019..431518	-	499	33241730	-	CpB0397	-	leucyl aminopeptidase
396	 41.61	0	431543..432025	-	160	33241731	-	CpB0398	-	single-strand DNA-binding protein
397	 40.12	0	432196..432696	-	166	33241732	-	CpB0399	-	hypothetical protein
398	 43.16	0	432829..434823	+	664	33241733	-	CpB0401	-	glycogen hydrolase (debranching)
399	 40.66	0	434816..435634	-	272	33241734	-	CpB0400	-	hypothetical protein
400	 42.70	0	435631..436644	-	337	33241735	ruvB	CpB0402	-	Holliday junction DNA helicase B
401	 37.10	-1	437007..437192	-	61	33241736	-	CpB0403	-	hypothetical protein
402	 40.66	0	437314..437886	+	190	33241737	dcd	CpB0404	-	deoxycytidine triphosphate deaminase
403	 41.61	0	437780..438226	+	148	33241738	-	CpB0405	-	hypothetical protein
404	 39.81	0	438236..439471	+	411	33241739	-	CpB0406	-	hemolysin
405	 37.20	-1	439464..440678	+	404	33241740	-	CpB0407	-	hypothetical protein
406	 44.62	+1	440738..441853	-	371	33241741	nifS	CpB0408	-	nitrogen fixation protein
407	 43.90	+1	441878..442615	-	245	33241742	-	CpB0409	-	hypothetical protein
408	 29.09	-2	442679..442843	-	54	33241743	-	CpB0410	-	hypothetical protein
409	 32.85	-2	442954..443160	-	68	33241744	-	CpB0411	-	hypothetical protein
410	 40.97	0	443268..444026	+	252	33241745	-	CpB0412	-	hypothetical protein
411	 41.09	0	444036..444809	+	257	33241746	-	CpB0413	-	hypothetical protein
412	 46.06	+1	444992..445384	-	130	33241747	-	CpB0414	-	beta-lactamase regulatory protein
413	 40.81	0	445385..446494	-	369	33241748	-	CpB0415	-	A/G-specific adenine glycosylase
414	 43.63	0	446515..447213	+	232	33241749	sfhB	CpB0416	-	pseudouridine synthetase
415	 45.13	+1	447368..448333	-	321	33241750	-	CpB0417	-	hypothetical protein
416	 48.33	+2	448463..449209	-	248	33241751	-	CpB0418	-	hypothetical protein
417	 33.92	-2	449281..449451	-	56	33241752	-	CpB0419	-	hypothetical protein
418	 43.78	0	449469..450368	+	299	33241753	-	CpB0421	-	enoyl-(acyl carrier protein) reductase
419	 41.81	0	450355..451227	-	290	33241754	-	CpB0420	-	putative had hydrolase/phosphatase
40.62	MEAN

3.18	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.