IslandPathversion 1.0

IslandPath Analysis: Chlamydophila pneumoniae TW-183



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.62 STD DEV: 3.18
Chlamydophila pneumoniae TW-183, complete genome - 1..1225935
1113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
286	 36.26	-1	309471..310289	-	272	33241621	-	CpB0286	-	gene encoding a 29 kDa immunogenic protein
287	 39.64	0	310286..310951	-	221	33241622	-	CpB0287	-	ABC transporter
288	 36.16	-1	310961..311986	-	341	33241623	-	CpB0288	-	amino-acid ABC transporter protein
289	 39.90	0	312471..313520	+	349	33241624	-	CpB0289	-	fructose-bisphosphate aldolase
290	 39.30	0	313540..314946	+	468	33241625	-	CpB0290	-	extreme acid resistance protein xasA
291	 37.46	0	314943..315911	-	322	33241626	-	CpB0291	-	hypothetical protein
292	 38.06	0	315962..316384	-	140	33241627	-	CpB0292	-	hypothetical protein
293	 39.15	0	316462..318009	-	515	33241628	-	CpB0293	-	hypothetical protein
294	 41.54	0	318061..319473	-	470	33241629	mgtE	CpB0294	-	MgtE
295	 38.81	0	319500..321635	-	711	33241630	-	CpB0295	-	hypothetical protein
296	 41.08	0	321982..323130	-	382	33241631	-	CpB0296	-	hypothetical protein
297	 38.22	0	323226..324413	+	395	33241632	-	CpB0297	-	amino acid (glutamate) transporter
298	 40.47	0	324456..325940	+	494	33241633	-	CpB0299	-	sodium-dependent amino acid transporter
299	 28.21	-2	325925..326080	-	51	33241634	-	CpB0298	-	hypothetical protein
300	 41.43	0	326081..326611	+	176	33241635	-	CpB0300	-	inclusion membrane protein B
301	 44.61	+1	326642..327253	+	203	33241636	-	CpB0301	-	inclusion membrane protein C
302	 38.84	0	327363..330140	+	925	33241637	-	CpB0302	-	hypothetical protein
303	 34.78	-1	330506..330919	+	137	33241638	-	CpB0303	-	cAMP-dependent protein kinase type I regulatory subunit
304	 31.25	-2	331038..331277	-	79	33241639	acpP	CpB0304	-	acyl carrier protein
305	 42.30	0	331433..332179	-	248	33241640	fabG	CpB0305	-	3-ketoacyl-(acyl-carrier-protein) reductase
306	 39.48	0	332185..333111	-	308	33241641	fabD	CpB0306	-	acyl-carrier-protein S-malonyltransferase
307	 42.16	0	333128..334135	-	335	33241642	yjaX	CpB0307	-	3-oxoacyl-(acyl carrier protein) synthase III
308	 36.32	-1	334230..334832	+	200	33241643	recR	CpB0308	-	recombination protein RecR
309	 38.08	0	335191..337569	+	792	33241644	-	CpB0309	-	putative omp85 analog
310	 33.91	-2	337664..338179	+	171	33241645	-	CpB0310	-	OmpH-like outer membrane protein
311	 40.54	0	338201..339283	+	360	33241646	lpxD	CpB0311	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
312	 34.58	-1	339332..340372	-	346	33241647	-	CpB0312	-	hypothetical protein
313	 42.37	0	340547..341575	+	342	33241648	-	CpB0313	-	pyruvate dehydrogenase complex E1 alpha subunit
314	 39.92	0	341568..342554	+	328	33241649	-	CpB0314	-	pyruvate dehydrogenase E1 beta subunit
315	 42.48	0	342559..343848	+	429	33241650	-	CpB0315	-	branched-chain alpha-keto acid dehydrogenase subunit E2
316	 38.83	0	343926..346400	-	824	33241651	-	CpB0316	-	glycogen phosphorylase
317	 41.80	0	346648..347013	+	121	33241652	-	CpB0318	-	hypothetical protein
318	 37.31	-1	347006..348388	-	460	33241653	dnaA	CpB0317	-	chromosomal replication initiation protein
319	 37.29	-1	348460..350832	-	790	33241654	-	CpB0319	-	putative inner membrane protein translocase component YidC
320	 38.29	0	350986..351852	-	288	33241655	-	CpB0320	-	prolipoprotein diacylglyceryl transferase
321	 37.94	0	351938..352393	+	151	33241656	-	CpB0321	-	hypothetical protein
322	 42.28	0	352404..352772	+	122	33241657	acpS	CpB0323	-	4'-phosphopantetheinyl transferase
323	 41.56	0	352764..353699	-	311	33241658	-	CpB0322	-	thioredoxin reductase
324	 31.58	-2	354164..354334	+	56	33241659	-	CpB0324	-	hypothetical protein
325	 36.95	-1	354391..356133	+	580	33241660	rpsA	CpB0325	-	30S ribosomal protein S1
326	 37.16	-1	356234..357538	+	434	33241661	nusA	CpB0326	-	transcription elongation factor NusA
327	 40.88	0	357477..360167	+	896	33241662	infB	CpB0327	-	translation initiation factor IF-2
328	 34.99	-1	360181..360543	+	120	33241663	rbfA	CpB0328	-	ribosome-binding factor A
329	 41.10	0	360589..361296	+	235	33241664	truB	CpB0329	-	tRNA pseudouridine synthase B
330	 38.98	0	361280..362200	+	306	33241665	ribC	CpB0331	-	bifunctional riboflavin kinase/FMN adenylyltransferase
331	 40.00	0	362178..363272	-	364	33241666	-	CpB0330	-	translation-associated GTPase
332	 37.21	-1	363663..364745	+	360	33241667	-	CpB0332	-	type III secretion system protein
333	 42.80	0	364745..366877	+	710	33241668	lcrD	CpB0333	-	low calcium response D
334	 43.58	0	366906..368105	+	399	33241669	copN	CpB0334	-	CopN
335	 41.44	0	368122..368565	+	147	33241670	scc1	CpB0335	-	Scc1
336	 40.42	0	368562..370142	+	526	33241671	-	CpB0336	-	4-alpha-glucanotransferase
337	 37.04	-1	370359..370628	+	89	33241672	rpmB	CpB0337	-	50S ribosomal protein L28
338	 44.05	+1	370655..372409	+	584	33241673	-	CpB0338	-	hypothetical protein
339	 35.40	-1	372502..373563	+	353	33241674	-	CpB0339	-	putative phopholipase D
340	 39.83	0	373613..374089	-	158	33241675	-	CpB0340	-	hypothetical protein
341	 45.80	+1	374112..375851	-	579	33241676	-	CpB0341	-	hypothetical protein
342	 39.12	0	376211..376504	-	97	33241677	ltuB	CpB0342	-	LtuB
343	 39.34	0	376725..377240	+	171	33241678	-	CpB0343	-	hypothetical protein
344	 46.46	+1	377231..378091	+	286	33241679	-	CpB0344	-	methenyltetrahydrofolate cyclohydrolase
345	 40.63	0	378064..379008	+	314	33241680	apbE	CpB0346	-	thiamine biosynthesis lipoprotein precursor
346	 42.97	0	378986..379483	-	165	33241681	smpB	CpB0345	-	SsrA-binding protein
347	 40.33	0	379692..380792	+	366	33241682	-	CpB0347	-	DNA polymerase III subunit beta
348	 40.08	0	382036..383013	+	325	33241683	-	CpB0351	-	hypothetical protein
349	 40.30	0	382970..384835	-	621	33241684	-	CpB0350	-	putative metalloproteinase
350	 40.26	0	384848..385987	-	379	33241685	-	CpB0352	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
351	 36.41	-1	386116..387090	-	324	33241686	-	CpB0353	-	putative integral membrane protein
352	 39.16	0	387090..388445	-	451	33241687	-	CpB0354	-	putative integral membrane protein
353	 40.90	0	388439..389218	-	259	33241688	-	CpB0355	-	ABC transporter
354	 40.02	0	389202..390173	-	323	33241689	-	CpB0356	-	periplasmic substrate binding protein TroA
355	 22.06	-2	390301..390504	+	67	33241690	-	CpB0357	-	hypothetical protein
356	 39.84	0	390681..391187	+	168	33241691	-	CpB0358	-	hypothetical protein
357	 40.44	0	391388..392935	+	515	33241692	-	CpB0359	-	ATP/ADP-transporter
358	 37.78	0	393053..394333	+	426	33241693	-	CpB0360	-	hypothetical protein
359	 23.17	-2	394393..394638	+	81	33241694	-	CpB0361	-	hypothetical protein
360	 37.80	0	394667..396010	+	447	33241695	-	CpB0362	-	hypothetical protein
361	 39.02	0	396088..397389	-	433	33241696	-	CpB0363	-	hypothetical protein
362	 38.14	0	397606..397959	-	117	33241697	-	CpB0364	-	hypothetical protein
363	 38.26	0	397966..398817	-	283	33241698	-	CpB0365	-	hypothetical protein
364	 33.90	-2	399075..399251	-	58	33241699	-	CpB0366	-	hypothetical protein
365	 37.43	-1	399327..399497	+	56	33241700	-	CpB0367	-	hypothetical protein
366	 40.85	0	399512..401320	+	602	33241701	-	CpB0368	-	GTP-binding protein LepA
367	 44.03	+1	401419..402858	-	479	33241702	-	CpB0369	-	6-phosphogluconate dehydrogenase
368	 41.45	0	402879..404147	-	422	33241703	-	CpB0370	-	tyrosyl-tRNA synthetase
369	 48.63	+2	404270..404452	-	60	33241704	-	CpB0371	-	hypothetical protein
370	 44.19	+1	404552..405325	-	257	33241705	-	CpB0372	-	RNA polymerase sigma factor sigma-28
371	 41.11	0	405440..407188	-	582	33241706	-	CpB0373	-	type III secretion system protein
372	 44.20	+1	407466..407741	+	91	33241707	-	CpB0374	-	ferredoxin IV
373	 41.26	0	408013..409047	+	344	33241708	-	CpB0375	-	hypothetical protein
374	 29.41	-2	409199..409351	+	50	33241709	-	CpB0376	-	hypothetical protein
375	 44.23	+1	409476..409943	+	155	33241710	-	CpB0377	-	hypothetical protein
376	 44.14	+1	410209..410430	-	73	33241711	-	CpB0378	-	hypothetical protein
377	 44.99	+1	410602..411339	+	245	33241712	-	CpB0379	-	hypothetical protein
378	 42.40	0	411269..411610	+	113	33241713	-	CpB0380	-	hypothetical protein
379	 46.17	+1	411851..413065	+	404	33241714	-	CpB0381	-	hypothetical protein
380	 44.80	+1	413300..414415	+	371	33241715	-	CpB0382	-	hypothetical protein
381	 41.11	0	414647..415006	+	119	33241716	-	CpB0383	-	hypothetical protein
382	 41.19	0	415187..415504	+	105	33241717	-	CpB0384	-	hypothetical protein
383	 43.59	0	415880..417721	+	613	33241718	aarC	CpB0385	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
384	 46.87	+1	417778..418464	+	228	33241719	-	CpB0386	-	hypothetical protein
385	 42.37	0	418621..419118	+	165	33241720	-	CpB0387	-	hypothetical protein
40.62	MEAN

3.18	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.