IslandPathversion 1.0

IslandPath Analysis: Chlamydophila pneumoniae TW-183



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.62 STD DEV: 3.18
Chlamydophila pneumoniae TW-183, complete genome - 1..1225935
1113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
246	 43.70	0	274109..275275	-	388	33241581	-	CpB0246	-	hypothetical protein
247	 41.39	0	275614..276780	-	388	33241582	-	CpB0247	-	hypothetical protein
248	 38.62	0	276898..277332	-	144	33241583	-	CpB0248	-	hypothetical protein
249	 38.03	0	277544..277969	-	141	33241584	-	CpB0249	-	hypothetical protein
250	 36.67	-1	278100..278339	+	79	33241585	-	CpB0250	-	hypothetical protein
251	 40.97	0	278332..278973	+	213	33241586	adk	CpB0251	-	adenylate kinase
252	 40.68	0	279059..279916	+	285	33241587	-	CpB0252	-	p60 precursor
253	 37.04	-1	279962..280366	-	134	33241588	rpsI	CpB0253	-	30S ribosomal protein S9
254	 37.11	-1	280380..280829	-	149	33241589	rplM	CpB0254	-	50S ribosomal protein L13
255	 39.35	0	281061..281741	-	226	33241590	-	CpB0255	-	ABC transporter ATPase
256	 38.56	0	281744..283255	-	503	33241591	-	CpB0256	-	hypothetical protein
257	 33.96	-2	283313..283471	-	52	33241592	rpmG	CpB0257	-	50S ribosomal protein L33
258	 37.66	0	283474..284976	+	500	33241593	-	CpB0258	-	hypothetical protein
259	 39.96	0	284987..285499	-	170	33241594	-	CpB0259	-	hypothetical protein
260	 39.22	0	285361..285870	-	169	33241595	-	CpB0260	-	hypothetical protein
261	 39.90	0	285870..286676	-	268	33241596	-	CpB0261	-	hypothetical protein
262	 38.45	0	286740..287579	-	279	33241597	-	CpB0262	-	hypothetical protein
263	 37.24	-1	287809..288678	-	289	33241598	-	CpB0263	-	hypothetical protein
264	 38.43	0	288678..289541	-	287	33241599	-	CpB0264	-	hypothetical protein
265	 38.98	0	289852..290400	-	182	33241600	-	CpB0265	-	hypothetical protein
266	 28.48	-2	290547..290711	-	54	33241601	-	CpB0266	-	pEARLI 4
267	 35.47	-1	290959..291474	-	171	33241602	-	CpB0267	-	YecA
268	 41.90	0	291716..292450	+	244	33241603	-	CpB0268	-	YdaO
269	 40.90	0	292505..293350	+	281	33241604	surE	CpB0269	-	stationary phase survival protein SurE
270	 39.84	0	293663..294553	+	296	33241605	-	CpB0270	-	hypothetical protein
271	 39.72	0	294566..295144	-	192	33241606	-	CpB0271	-	aromatic acid decarboxylase
272	 34.45	-1	295141..296034	-	297	33241607	ubiA	CpB0272	-	prenyltransferase
273	 42.67	0	296598..297293	+	231	33241608	-	CpB0273	-	HB6 protein
274	 40.87	0	297545..298327	+	260	33241609	-	CpB0274	-	hypothetical protein
275	 43.77	0	298391..298735	+	114	33241610	-	CpB0275	-	hypothetical protein
276	 40.18	0	298887..299864	-	325	33241611	-	CpB0276	-	membrane dipeptidase precursor
277	 37.63	0	299879..300739	-	286	33241612	-	CpB0277	-	SUA5 protein
278	 40.71	0	301048..301779	+	243	33241613	-	CpB0279	-	esterase
279	 38.23	0	301751..302506	-	251	33241614	dnaX	CpB0278	-	DNA polymerase III subunit delta'
280	 42.83	0	302638..303258	-	206	33241615	tdk	CpB0280	-	thymidylate kinase
281	 41.00	0	303263..305767	-	834	33241616	-	CpB0281	-	DNA gyrase subunit A
282	 39.25	0	305783..308200	-	805	33241617	gyrB	CpB0282	-	DNA gyrase subunit B
283	 35.34	-1	308204..308551	-	115	33241618	-	CpB0283	-	hypothetical protein
284	 31.34	-2	308618..308818	+	66	33241619	-	CpB0284	-	hypothetical protein
285	 39.02	0	308815..309324	-	169	33241620	-	CpB0285	-	hypothetical protein
286	 36.26	-1	309471..310289	-	272	33241621	-	CpB0286	-	gene encoding a 29 kDa immunogenic protein
287	 39.64	0	310286..310951	-	221	33241622	-	CpB0287	-	ABC transporter
288	 36.16	-1	310961..311986	-	341	33241623	-	CpB0288	-	amino-acid ABC transporter protein
289	 39.90	0	312471..313520	+	349	33241624	-	CpB0289	-	fructose-bisphosphate aldolase
290	 39.30	0	313540..314946	+	468	33241625	-	CpB0290	-	extreme acid resistance protein xasA
291	 37.46	0	314943..315911	-	322	33241626	-	CpB0291	-	hypothetical protein
292	 38.06	0	315962..316384	-	140	33241627	-	CpB0292	-	hypothetical protein
293	 39.15	0	316462..318009	-	515	33241628	-	CpB0293	-	hypothetical protein
294	 41.54	0	318061..319473	-	470	33241629	mgtE	CpB0294	-	MgtE
295	 38.81	0	319500..321635	-	711	33241630	-	CpB0295	-	hypothetical protein
296	 41.08	0	321982..323130	-	382	33241631	-	CpB0296	-	hypothetical protein
297	 38.22	0	323226..324413	+	395	33241632	-	CpB0297	-	amino acid (glutamate) transporter
298	 40.47	0	324456..325940	+	494	33241633	-	CpB0299	-	sodium-dependent amino acid transporter
299	 28.21	-2	325925..326080	-	51	33241634	-	CpB0298	-	hypothetical protein
300	 41.43	0	326081..326611	+	176	33241635	-	CpB0300	-	inclusion membrane protein B
301	 44.61	+1	326642..327253	+	203	33241636	-	CpB0301	-	inclusion membrane protein C
302	 38.84	0	327363..330140	+	925	33241637	-	CpB0302	-	hypothetical protein
303	 34.78	-1	330506..330919	+	137	33241638	-	CpB0303	-	cAMP-dependent protein kinase type I regulatory subunit
304	 31.25	-2	331038..331277	-	79	33241639	acpP	CpB0304	-	acyl carrier protein
305	 42.30	0	331433..332179	-	248	33241640	fabG	CpB0305	-	3-ketoacyl-(acyl-carrier-protein) reductase
306	 39.48	0	332185..333111	-	308	33241641	fabD	CpB0306	-	acyl-carrier-protein S-malonyltransferase
307	 42.16	0	333128..334135	-	335	33241642	yjaX	CpB0307	-	3-oxoacyl-(acyl carrier protein) synthase III
308	 36.32	-1	334230..334832	+	200	33241643	recR	CpB0308	-	recombination protein RecR
309	 38.08	0	335191..337569	+	792	33241644	-	CpB0309	-	putative omp85 analog
310	 33.91	-2	337664..338179	+	171	33241645	-	CpB0310	-	OmpH-like outer membrane protein
311	 40.54	0	338201..339283	+	360	33241646	lpxD	CpB0311	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
312	 34.58	-1	339332..340372	-	346	33241647	-	CpB0312	-	hypothetical protein
313	 42.37	0	340547..341575	+	342	33241648	-	CpB0313	-	pyruvate dehydrogenase complex E1 alpha subunit
314	 39.92	0	341568..342554	+	328	33241649	-	CpB0314	-	pyruvate dehydrogenase E1 beta subunit
315	 42.48	0	342559..343848	+	429	33241650	-	CpB0315	-	branched-chain alpha-keto acid dehydrogenase subunit E2
316	 38.83	0	343926..346400	-	824	33241651	-	CpB0316	-	glycogen phosphorylase
317	 41.80	0	346648..347013	+	121	33241652	-	CpB0318	-	hypothetical protein
318	 37.31	-1	347006..348388	-	460	33241653	dnaA	CpB0317	-	chromosomal replication initiation protein
319	 37.29	-1	348460..350832	-	790	33241654	-	CpB0319	-	putative inner membrane protein translocase component YidC
320	 38.29	0	350986..351852	-	288	33241655	-	CpB0320	-	prolipoprotein diacylglyceryl transferase
321	 37.94	0	351938..352393	+	151	33241656	-	CpB0321	-	hypothetical protein
322	 42.28	0	352404..352772	+	122	33241657	acpS	CpB0323	-	4'-phosphopantetheinyl transferase
323	 41.56	0	352764..353699	-	311	33241658	-	CpB0322	-	thioredoxin reductase
324	 31.58	-2	354164..354334	+	56	33241659	-	CpB0324	-	hypothetical protein
325	 36.95	-1	354391..356133	+	580	33241660	rpsA	CpB0325	-	30S ribosomal protein S1
326	 37.16	-1	356234..357538	+	434	33241661	nusA	CpB0326	-	transcription elongation factor NusA
327	 40.88	0	357477..360167	+	896	33241662	infB	CpB0327	-	translation initiation factor IF-2
328	 34.99	-1	360181..360543	+	120	33241663	rbfA	CpB0328	-	ribosome-binding factor A
329	 41.10	0	360589..361296	+	235	33241664	truB	CpB0329	-	tRNA pseudouridine synthase B
330	 38.98	0	361280..362200	+	306	33241665	ribC	CpB0331	-	bifunctional riboflavin kinase/FMN adenylyltransferase
331	 40.00	0	362178..363272	-	364	33241666	-	CpB0330	-	translation-associated GTPase
332	 37.21	-1	363663..364745	+	360	33241667	-	CpB0332	-	type III secretion system protein
333	 42.80	0	364745..366877	+	710	33241668	lcrD	CpB0333	-	low calcium response D
334	 43.58	0	366906..368105	+	399	33241669	copN	CpB0334	-	CopN
335	 41.44	0	368122..368565	+	147	33241670	scc1	CpB0335	-	Scc1
336	 40.42	0	368562..370142	+	526	33241671	-	CpB0336	-	4-alpha-glucanotransferase
337	 37.04	-1	370359..370628	+	89	33241672	rpmB	CpB0337	-	50S ribosomal protein L28
338	 44.05	+1	370655..372409	+	584	33241673	-	CpB0338	-	hypothetical protein
339	 35.40	-1	372502..373563	+	353	33241674	-	CpB0339	-	putative phopholipase D
340	 39.83	0	373613..374089	-	158	33241675	-	CpB0340	-	hypothetical protein
341	 45.80	+1	374112..375851	-	579	33241676	-	CpB0341	-	hypothetical protein
342	 39.12	0	376211..376504	-	97	33241677	ltuB	CpB0342	-	LtuB
343	 39.34	0	376725..377240	+	171	33241678	-	CpB0343	-	hypothetical protein
344	 46.46	+1	377231..378091	+	286	33241679	-	CpB0344	-	methenyltetrahydrofolate cyclohydrolase
345	 40.63	0	378064..379008	+	314	33241680	apbE	CpB0346	-	thiamine biosynthesis lipoprotein precursor
40.62	MEAN

3.18	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.