IslandPath Analysis: Chlamydophila pneumoniae TW-183



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.62   STD DEV: 3.18
Chlamydophila pneumoniae TW-183, complete genome - 1..1225935
1113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
196	 42.34	0	230090..230533	-	147	33241531	-	CpB0196	-	arginine repressor protein
197	 41.55	0	230617..231651	+	344	33241532	-	CpB0197	-	O-sialoglycoprotein endopeptidase
198	 40.71	0	231597..233195	+	532	33241533	-	CpB0198	-	oligopeptide ABC transport system substrate-binding protein oppA precursor
199	 40.03	0	233346..234929	+	527	33241534	-	CpB0199	-	oligopeptide ABC transport system substrate-binding protein oppA precursor
200	 41.44	0	234985..236292	+	435	33241535	-	CpB0200	-	oligopeptide ABC transport system substrate-binding protein oppA precursor
201	 40.01	0	236570..238156	+	528	33241536	-	CpB0201	-	dipeptide ABC transporter
202	 39.15	0	238449..239393	+	314	33241537	oppB	CpB0202	-	oligopeptide transport system permease protein
203	 42.81	0	239424..240278	+	284	33241538	oppC	CpB0203	-	oligopeptide ABC transporter (permease)
204	 40.12	0	240271..241125	+	284	33241539	oppD	CpB0204	-	oligopeptide transport ATP-binding protein
205	 41.06	0	241122..241910	+	262	33241540	oppF	CpB0205	-	oligopeptide transport protein
206	 33.33	-2	242017..242199	+	60	33241541	-	CpB0206	-	hypothetical protein
207	 36.59	-1	242415..243212	+	265	33241542	-	CpB0207	-	hypothetical protein
208	 36.51	-1	243224..243412	+	62	33241543	-	CpB0208	-	hypothetical protein
209	 31.31	-2	243540..243737	+	65	33241544	-	CpB0209	-	hypothetical protein
210	 42.33	0	243816..244571	+	251	33241545	-	CpB0210	-	hypothetical protein
211	 45.51	+1	244615..246027	+	470	33241546	-	CpB0211	-	2-oxoglutarate/malate translocator precursor
212	 42.04	0	246360..248012	+	550	33241547	-	CpB0212	-	diphosphate--fructose-6-phosphate 1-phosphotransferase
213	 41.06	0	248437..248682	+	81	33241548	-	CpB0213	-	hypothetical protein
214	 38.82	0	248844..249791	-	315	33241549	-	CpB0214	-	hypothetical protein
215	 38.05	0	249867..250163	-	98	33241550	-	CpB0215	-	hypothetical protein
216	 39.11	0	250292..251485	-	397	33241551	-	CpB0216	-	hypothetical protein
217	 30.82	-2	251521..251679	-	52	33241552	-	CpB0217	-	hypothetical protein
218	 36.05	-1	251857..253071	-	404	33241553	-	CpB0218	-	hypothetical protein
219	 39.21	0	253170..254429	-	419	33241554	-	CpB0219	-	hypothetical protein
220	 38.36	0	254585..255022	-	145	33241555	-	CpB0220	-	hypothetical protein
221	 37.85	0	255310..255996	+	228	33241556	-	CpB0221	-	hypothetical protein
222	 34.21	-2	255993..256562	-	189	33241557	-	CpB0222	-	hypothetical protein
223	 44.15	+1	256771..257889	+	372	33241558	-	CpB0223	-	queuine tRNA-ribosyltransferase
224	 41.76	0	258110..258655	+	181	33241559	-	CpB0224	-	hypothetical protein
225	 37.23	-1	259071..259481	+	136	33241560	-	CpB0225	-	hypothetical protein
226	 45.83	+1	259646..259837	-	63	33241561	-	CpB0226	-	hypothetical protein
227	 34.50	-1	259918..260259	+	113	33241562	-	CpB0227	-	hypothetical protein
228	 37.53	0	260370..260750	+	126	33241563	-	CpB0228	-	hypothetical protein
229	 38.68	0	260849..261091	+	80	33241564	-	CpB0229	-	hypothetical protein
230	 40.35	0	261070..261240	+	56	33241565	-	CpB0230	-	hypothetical protein
231	 41.96	0	261287..261958	+	223	33241566	-	CpB0231	-	hypothetical protein
232	 40.25	0	261980..262384	+	134	33241567	-	CpB0232	-	hypothetical protein
233	 38.65	0	262420..262833	-	137	33241568	-	CpB0233	-	putative disulfide oxidoreductase
234	 39.17	0	262823..263524	-	233	33241569	-	CpB0234	-	putative disulfide bond chaperone
235	 40.80	0	263598..264977	+	459	33241570	-	CpB0235	-	hypothetical protein
236	 39.06	0	264987..265667	-	226	33241571	-	CpB0236	-	hypothetical protein
237	 40.96	0	265664..266371	-	235	33241572	-	CpB0237	-	ATP-binding cassette-transport protein
238	 38.48	0	266643..267536	-	297	33241573	-	CpB0238	-	pfs protein
239	 36.21	-1	267659..267832	-	57	33241574	-	CpB0239	-	hypothetical protein
240	 39.51	0	267959..268654	-	231	33241575	-	CpB0240	-	hypothetical protein
241	 40.26	0	268830..269594	+	254	33241576	-	CpB0241	-	3-deoxy-manno-octulosonate cytidylyltransferase
242	 41.64	0	269570..271183	+	537	33241577	-	CpB0242	-	CTP synthetase
243	 39.69	0	271176..271631	+	151	33241578	-	CpB0243	-	Holliday junction resolvase-like protein
244	 39.57	0	271717..273255	+	512	33241579	-	CpB0244	-	glucose-6-phosphate 1-dehydrogenase
245	 36.70	-1	273289..274089	+	266	33241580	-	CpB0245	-	6-phosphogluconolactonase
246	 43.70	0	274109..275275	-	388	33241581	-	CpB0246	-	hypothetical protein
247	 41.39	0	275614..276780	-	388	33241582	-	CpB0247	-	hypothetical protein
248	 38.62	0	276898..277332	-	144	33241583	-	CpB0248	-	hypothetical protein
249	 38.03	0	277544..277969	-	141	33241584	-	CpB0249	-	hypothetical protein
250	 36.67	-1	278100..278339	+	79	33241585	-	CpB0250	-	hypothetical protein
251	 40.97	0	278332..278973	+	213	33241586	adk	CpB0251	-	adenylate kinase
252	 40.68	0	279059..279916	+	285	33241587	-	CpB0252	-	p60 precursor
253	 37.04	-1	279962..280366	-	134	33241588	rpsI	CpB0253	-	30S ribosomal protein S9
254	 37.11	-1	280380..280829	-	149	33241589	rplM	CpB0254	-	50S ribosomal protein L13
255	 39.35	0	281061..281741	-	226	33241590	-	CpB0255	-	ABC transporter ATPase
256	 38.56	0	281744..283255	-	503	33241591	-	CpB0256	-	hypothetical protein
257	 33.96	-2	283313..283471	-	52	33241592	rpmG	CpB0257	-	50S ribosomal protein L33
258	 37.66	0	283474..284976	+	500	33241593	-	CpB0258	-	hypothetical protein
259	 39.96	0	284987..285499	-	170	33241594	-	CpB0259	-	hypothetical protein
260	 39.22	0	285361..285870	-	169	33241595	-	CpB0260	-	hypothetical protein
261	 39.90	0	285870..286676	-	268	33241596	-	CpB0261	-	hypothetical protein
262	 38.45	0	286740..287579	-	279	33241597	-	CpB0262	-	hypothetical protein
263	 37.24	-1	287809..288678	-	289	33241598	-	CpB0263	-	hypothetical protein
264	 38.43	0	288678..289541	-	287	33241599	-	CpB0264	-	hypothetical protein
265	 38.98	0	289852..290400	-	182	33241600	-	CpB0265	-	hypothetical protein
266	 28.48	-2	290547..290711	-	54	33241601	-	CpB0266	-	pEARLI 4
267	 35.47	-1	290959..291474	-	171	33241602	-	CpB0267	-	YecA
268	 41.90	0	291716..292450	+	244	33241603	-	CpB0268	-	YdaO
269	 40.90	0	292505..293350	+	281	33241604	surE	CpB0269	-	stationary phase survival protein SurE
270	 39.84	0	293663..294553	+	296	33241605	-	CpB0270	-	hypothetical protein
271	 39.72	0	294566..295144	-	192	33241606	-	CpB0271	-	aromatic acid decarboxylase
272	 34.45	-1	295141..296034	-	297	33241607	ubiA	CpB0272	-	prenyltransferase
273	 42.67	0	296598..297293	+	231	33241608	-	CpB0273	-	HB6 protein
274	 40.87	0	297545..298327	+	260	33241609	-	CpB0274	-	hypothetical protein
275	 43.77	0	298391..298735	+	114	33241610	-	CpB0275	-	hypothetical protein
276	 40.18	0	298887..299864	-	325	33241611	-	CpB0276	-	membrane dipeptidase precursor
277	 37.63	0	299879..300739	-	286	33241612	-	CpB0277	-	SUA5 protein
278	 40.71	0	301048..301779	+	243	33241613	-	CpB0279	-	esterase
279	 38.23	0	301751..302506	-	251	33241614	dnaX	CpB0278	-	DNA polymerase III subunit delta'
280	 42.83	0	302638..303258	-	206	33241615	tdk	CpB0280	-	thymidylate kinase
281	 41.00	0	303263..305767	-	834	33241616	-	CpB0281	-	DNA gyrase subunit A
282	 39.25	0	305783..308200	-	805	33241617	gyrB	CpB0282	-	DNA gyrase subunit B
283	 35.34	-1	308204..308551	-	115	33241618	-	CpB0283	-	hypothetical protein
284	 31.34	-2	308618..308818	+	66	33241619	-	CpB0284	-	hypothetical protein
285	 39.02	0	308815..309324	-	169	33241620	-	CpB0285	-	hypothetical protein
286	 36.26	-1	309471..310289	-	272	33241621	-	CpB0286	-	gene encoding a 29 kDa immunogenic protein
287	 39.64	0	310286..310951	-	221	33241622	-	CpB0287	-	ABC transporter
288	 36.16	-1	310961..311986	-	341	33241623	-	CpB0288	-	amino-acid ABC transporter protein
289	 39.90	0	312471..313520	+	349	33241624	-	CpB0289	-	fructose-bisphosphate aldolase
290	 39.30	0	313540..314946	+	468	33241625	-	CpB0290	-	extreme acid resistance protein xasA
291	 37.46	0	314943..315911	-	322	33241626	-	CpB0291	-	hypothetical protein
292	 38.06	0	315962..316384	-	140	33241627	-	CpB0292	-	hypothetical protein
293	 39.15	0	316462..318009	-	515	33241628	-	CpB0293	-	hypothetical protein
294	 41.54	0	318061..319473	-	470	33241629	mgtE	CpB0294	-	MgtE
295	 38.81	0	319500..321635	-	711	33241630	-	CpB0295	-	hypothetical protein
40.62	MEAN

3.18	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.