IslandPath Analysis: Chlamydophila pneumoniae TW-183



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.62   STD DEV: 3.18
Chlamydophila pneumoniae TW-183, complete genome - 1..1225935
1113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
110	 39.30	0	136150..139281	+	1043	33241445	ileS	CpB0110	-	isoleucyl-tRNA synthetase
111	 40.61	0	139319..141229	-	636	33241446	-	CpB0111	-	signal peptidase I
112	 41.39	0	141426..142232	-	268	33241447	-	CpB0112	-	hypothetical protein
113	 35.15	-1	142262..142591	+	109	33241448	rpmE2	CpB0113	-	50S ribosomal protein L31 type B
114	 40.69	0	142830..143903	+	357	33241449	prfA	CpB0114	-	peptide chain release factor 1
115	 41.75	0	143869..144759	+	296	33241450	-	CpB0115	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
116	 38.75	0	144774..146120	+	448	33241451	ffh	CpB0116	-	signal recognition particle chain
117	 41.11	0	146111..146470	+	119	33241452	rpsP	CpB0117	-	30S ribosomal protein S16
118	 41.25	0	146484..147569	+	361	33241453	trmD	CpB0118	-	fused tRNA (guanine-N(1)-)-methyltransferase/uncharacterized domain-containing protein
119	 41.26	0	147597..147962	+	121	33241454	rplS	CpB0119	-	50S ribosomal protein L19
120	 40.31	0	148018..148662	+	214	33241455	rnhB	CpB0120	-	ribonuclease HII
121	 40.78	0	148659..149276	+	205	161484688	gmk	CpB0121	-	guanylate kinase
122	 36.73	-1	149273..149566	+	97	33241457	-	CpB0122	-	hypothetical protein
123	 39.92	0	149566..151221	+	551	33241458	-	CpB0123	-	methionyl-tRNA synthetase
124	 39.61	0	151266..153464	-	732	33241459	-	CpB0124	-	exodeoxyribonuclease V 67K chain
125	 38.93	0	154226..155566	+	446	33241460	-	CpB0125	-	hypothetical protein
126	 39.38	0	155591..156103	+	170	33241461	-	CpB0126	-	hypothetical protein
127	 34.64	-1	156164..156316	-	50	33241462	-	CpB0127	-	hypothetical protein
128	 39.82	0	156304..158583	+	759	33241463	-	CpB0128	-	hypothetical protein
129	 44.05	+1	158622..159638	-	338	33241464	-	CpB0129	-	putative cationic amino acid transporter
130	 45.51	+1	159772..160551	+	259	33241465	-	CpB0130	-	biotin--[acetyl-CoA-carboxylase] ligase
131	 37.38	-1	160556..161740	-	394	33241466	-	CpB0131	-	hypothetical protein
132	 38.03	0	162056..163078	+	340	33241467	-	CpB0132	-	hypothetical protein
133	 38.45	0	163082..164059	+	325	33241468	-	CpB0133	-	hypothetical protein
134	 43.15	0	164056..164829	-	257	33241469	-	CpB0134	-	hypothetical protein
135	 41.35	0	164959..166593	-	544	33241470	groEL	CpB0135	-	chaperonin GroEL
136	 42.07	0	166635..166943	-	102	33241471	groES	CpB0136	-	co-chaperonin GroES
137	 40.36	0	167061..168896	-	611	33241472	-	CpB0137	-	oligoendopeptidase F
138	 44.05	+1	168994..169749	-	251	33241473	ybgI	CpB0138	-	YbgI
139	 43.39	0	170192..171514	-	440	33241474	-	CpB0139	-	glutamate-1-semialdehyde aminotransferase
140	 40.74	0	171585..172151	-	188	33241475	-	CpB0140	-	hypothetical protein
141	 38.32	0	172165..172605	-	146	33241476	-	CpB0141	-	hypothetical protein
142	 40.66	0	172602..173297	-	231	33241477	-	CpB0142	-	ribose-5-phosphate isomerase A
143	 33.69	-2	173308..173586	-	92	33241478	-	CpB0143	-	hypothetical protein
144	 39.47	0	173706..174830	-	374	33241479	-	CpB0144	-	hypothetical protein
145	 40.31	0	175449..178058	+	869	33241480	-	CpB0145	-	ClpB
146	 39.71	0	178299..179867	+	522	33241481	-	CpB0146	-	hypothetical protein
147	 44.44	+1	180108..180593	+	161	33241482	-	CpB0147	-	hypothetical protein
148	 46.22	+1	180720..181169	+	149	33241483	-	CpB0148	-	hypothetical protein
149	 40.70	0	181341..183200	+	619	33241484	-	CpB0149	-	protein kinase
150	 41.48	0	183210..185198	+	662	33241485	ligA	CpB0150	-	NAD-dependent DNA ligase LigA
151	 40.75	0	185329..189942	+	1537	33241486	-	CpB0151	-	hypothetical protein
152	 39.18	0	190117..191637	-	506	33241487	-	CpB0152	-	pentachlorophenol 4-monooxygenase
153	 42.17	0	191810..192760	-	316	33241488	-	CpB0153	-	hypothetical protein
154	 42.63	0	192928..195390	+	820	33241489	leuS	CpB0154	-	leucyl-tRNA synthetase
155	 39.65	0	195387..196700	+	437	33241490	-	CpB0155	-	3-deoxy-D-manno-octulosonic-acid transferase
156	 30.92	-2	196980..197186	-	68	33241491	-	CpB0156	-	hypothetical protein
157	 37.20	-1	197262..197804	-	180	33241492	-	CpB0157	-	kdtA KDO-transferase
158	 38.69	0	197791..198219	-	142	33241493	-	CpB0158	-	hypothetical protein
159	 37.41	-1	198387..198926	-	179	33241494	-	CpB0159	-	KDO-transferase
160	 40.45	0	198960..199268	-	102	33241495	-	CpB0160	-	hypothetical protein
161	 39.51	0	199564..201198	-	544	33241496	-	CpB0161	-	diphosphate--fructose-6-phosphate 1-phosphotransferase
162	 40.34	0	201202..202029	-	275	33241497	cinI	CpB0162	-	cinnamoyl ester hydrolase
163	 37.03	-1	202207..203235	-	342	33241498	-	CpB0163	-	hypothetical protein
164	 42.74	0	203433..203804	+	123	33241499	-	CpB0164	-	hypothetical protein
165	 32.26	-2	203851..204408	+	185	33241500	-	CpB0165	-	hypothetical protein
166	 36.73	-1	204405..204992	+	195	33241501	-	CpB0166	-	hypothetical protein
167	 33.33	-2	205037..205372	+	111	33241502	-	CpB0167	-	hypothetical protein
168	 39.64	0	205381..205713	-	110	33241503	-	CpB0168	-	hypothetical protein
169	 39.91	0	205821..206048	-	75	33241504	-	CpB0169	-	hypothetical protein
170	 37.36	-1	206114..206908	-	264	33241505	-	CpB0170	-	hypothetical protein
171	 29.49	-2	207058..207213	+	51	33241506	-	CpB0171	-	hypothetical protein
172	 38.91	0	207429..208433	-	334	33241507	-	CpB0172	-	hypothetical protein
173	 41.16	0	208553..209842	-	429	33241508	-	CpB0173	-	GMP synthase
174	 42.11	0	209844..210584	-	246	33241509	-	CpB0174	-	guaB gene for inosine 5-monophosphase dehydrogenase subunit
175	 37.50	0	210645..210908	-	87	33241510	-	CpB0175	-	guaB gene for inosine 5-monophosphase dehydrogenase subunit
176	 37.68	0	211119..211394	-	91	33241511	-	CpB0176	-	hypothetical protein
177	 39.80	0	211640..212134	+	164	33241512	-	CpB0177	-	hypothetical protein
178	 39.90	0	212305..212685	+	126	33241513	-	CpB0178	-	hypothetical protein
179	 37.94	0	212693..213928	+	411	33241514	-	CpB0179	-	hypothetical protein
180	 40.47	0	214012..214866	-	284	33241515	-	CpB0180	-	hypothetical protein
181	 40.82	0	215193..215459	-	88	33241516	-	CpB0181	-	hypothetical protein
182	 38.75	0	215460..215810	-	116	33241517	-	CpB0182	-	hypothetical protein
183	 38.38	0	215759..216313	-	184	33241518	-	CpB0183	-	hypothetical protein
184	 36.32	-1	216181..216582	-	133	33241519	-	CpB0184	-	hypothetical protein
185	 39.56	0	216738..218102	-	454	33241520	-	CpB0185	-	acetyl-CoA carboxylase biotin carboxylase subunit
186	 39.09	0	218099..218602	-	167	33241521	-	CpB0186	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
187	 37.28	-1	218625..219182	-	185	33241522	-	CpB0187	-	elongation factor P
188	 38.41	0	219169..219858	-	229	33241523	-	CpB0188	-	ribulose-phosphate 3-epimerase
189	 40.92	0	220306..221478	+	390	33241524	-	CpB0189	-	inclusion membrane protein A
190	 39.20	0	221655..222455	+	266	33241525	-	CpB0190	-	hypothetical protein
191	 38.05	0	222518..223810	+	430	33241526	-	CpB0191	-	hypothetical protein
192	 39.87	0	223807..227235	+	1142	33241527	-	CpB0192	-	hypothetical protein
193	 40.25	0	227326..228684	+	452	33241528	-	CpB0193	-	hypothetical protein
194	 41.70	0	228718..229398	-	226	33241529	-	CpB0194	-	amino acid transport ATP-binding protein
195	 35.47	-1	229388..230041	-	217	33241530	-	CpB0195	-	ABC amino acid transporter permease
196	 42.34	0	230090..230533	-	147	33241531	-	CpB0196	-	arginine repressor protein
197	 41.55	0	230617..231651	+	344	33241532	-	CpB0197	-	O-sialoglycoprotein endopeptidase
198	 40.71	0	231597..233195	+	532	33241533	-	CpB0198	-	oligopeptide ABC transport system substrate-binding protein oppA precursor
199	 40.03	0	233346..234929	+	527	33241534	-	CpB0199	-	oligopeptide ABC transport system substrate-binding protein oppA precursor
200	 41.44	0	234985..236292	+	435	33241535	-	CpB0200	-	oligopeptide ABC transport system substrate-binding protein oppA precursor
201	 40.01	0	236570..238156	+	528	33241536	-	CpB0201	-	dipeptide ABC transporter
202	 39.15	0	238449..239393	+	314	33241537	oppB	CpB0202	-	oligopeptide transport system permease protein
203	 42.81	0	239424..240278	+	284	33241538	oppC	CpB0203	-	oligopeptide ABC transporter (permease)
204	 40.12	0	240271..241125	+	284	33241539	oppD	CpB0204	-	oligopeptide transport ATP-binding protein
205	 41.06	0	241122..241910	+	262	33241540	oppF	CpB0205	-	oligopeptide transport protein
206	 33.33	-2	242017..242199	+	60	33241541	-	CpB0206	-	hypothetical protein
207	 36.59	-1	242415..243212	+	265	33241542	-	CpB0207	-	hypothetical protein
208	 36.51	-1	243224..243412	+	62	33241543	-	CpB0208	-	hypothetical protein
209	 31.31	-2	243540..243737	+	65	33241544	-	CpB0209	-	hypothetical protein
40.62	MEAN

3.18	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.