IslandPath Analysis: Chlamydophila pneumoniae TW-183



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.62   STD DEV: 3.18
Chlamydophila pneumoniae TW-183, complete genome - 1..1225935
1113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1015	 40.13	0	1125660..1126895	-	411	33242350	-	CpB1019	-	hypothetical protein
1016	 40.98	0	1126904..1127701	-	265	33242351	-	CpB1020	-	CDP-diacylglycerol-serine O-phosphatidyltransferase
1017	 40.93	0	1128080..1131214	+	1044	33242352	-	CpB1021	-	ribonucleotide-diphosphate reductase subunit alpha
1018	 37.80	0	1131178..1132275	+	365	33242353	-	CpB1022	-	ribonucleotide-diphosphate reductase subunit beta
1019	 39.56	0	1132425..1133099	+	224	33242354	trmB	CpB1023	-	tRNA (guanine-N(7))-methyltransferase
1020	 42.45	0	1133217..1133819	+	200	33242355	-	CpB1025	-	putative rRNA methylase
1021	 44.26	+1	1133773..1134669	-	298	33242356	murB	CpB1024	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1022	 35.61	-1	1134714..1135109	-	131	33242357	nusB	CpB1026	-	transcription antitermination protein NusB
1023	 38.17	0	1135494..1135679	-	61	33242358	-	CpB1027	-	hypothetical protein
1024	 37.91	0	1135687..1136145	+	152	33242359	infC	CpB1028	-	translation initiation factor IF-3
1025	 38.46	0	1136123..1136317	+	64	33242360	rpmI	CpB1029	-	50S ribosomal protein L35
1026	 41.80	0	1136336..1136701	+	121	33242361	rplT	CpB1030	-	50S ribosomal protein L20
1027	 39.61	0	1136716..1137735	+	339	33242362	pheS	CpB1031	-	phenylalanyl-tRNA synthetase subunit alpha
1028	 37.88	0	1138100..1140145	+	681	33242363	-	CpB1033	-	hypothetical protein
1029	 39.69	0	1140114..1141214	-	366	33242364	-	CpB1032	-	hypothetical protein
1030	 38.55	0	1141218..1142291	-	357	33242365	-	CpB1034	-	hypothetical protein
1031	 38.54	0	1142410..1143369	+	319	33242366	-	CpB1035	-	putative p-loop ATPase
1032	 43.14	0	1143557..1146289	+	910	33242367	ftsH	CpB1036	-	hypothetical protein
1033	 40.43	0	1146465..1148549	-	694	33242368	-	CpB1037	-	polynucleotide phosphorylase/polyadenylase
1034	 35.93	-1	1148590..1148859	-	89	33242369	rpsO	CpB1038	-	30S ribosomal protein S15
1035	 44.52	+1	1149128..1149574	+	148	33242370	-	CpB1039	-	putative cytosine deaminase
1036	 42.42	0	1149564..1149794	+	76	33242371	-	CpB1040	-	hypothetical protein
1037	 41.38	0	1149791..1150498	-	235	33242372	-	CpB1041	-	hypothetical protein
1038	 40.80	0	1150578..1151099	-	173	33242373	-	CpB1042	-	hypothetical protein
1039	 40.04	0	1151114..1151635	-	173	33242374	-	CpB1043	-	hypothetical protein
1040	 35.90	-1	1151689..1152078	-	129	33242375	-	CpB1044	-	hypothetical protein
1041	 40.09	0	1152392..1152613	+	73	33242376	-	CpB1045	-	hypothetical protein
1042	 40.49	0	1152631..1153929	+	432	33242377	-	CpB1047	-	hypothetical protein
1043	 43.26	0	1153886..1154761	-	291	161484682	-	CpB1046	-	methionine aminopeptidase
1044	 40.89	0	1154767..1155375	-	202	33242379	-	CpB1048	-	hypothetical protein
1045	 43.63	0	1155602..1156009	-	135	33242380	-	CpB1049	-	hypothetical protein
1046	 42.29	0	1156121..1157896	-	591	33242381	-	CpB1050	-	ABC transporter
1047	 40.27	0	1157948..1159330	+	460	33242382	fumC	CpB1051	-	fumarate hydratase
1048	 43.76	0	1159432..1161129	-	565	33242383	-	CpB1052	-	sulfate transporter
1049	 40.62	0	1161337..1162599	+	420	33242384	-	CpB1053	-	hypothetical protein
1050	 41.45	0	1162745..1164604	+	619	33242385	-	CpB1054	-	hypothetical protein
1051	 41.48	0	1164709..1165641	+	310	33242386	ispH	CpB1055	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1052	 39.46	0	1165601..1166335	+	244	33242387	-	CpB1056	-	hypothetical protein
1053	 42.92	0	1166338..1167693	-	451	33242388	-	CpB1057	-	hypothetical protein
1054	 40.74	0	1167700..1167861	+	53	33242389	-	CpB1059	-	hypothetical protein
1055	 39.14	0	1167850..1169382	-	510	33242390	-	CpB1058	-	hypothetical protein
1056	 36.80	-1	1169398..1169916	-	172	33242391	-	CpB1060	-	chaperone SycD
1057	 41.75	0	1169916..1171376	-	486	33242392	-	CpB1061	-	hypothetical protein
1058	 39.33	0	1171738..1172037	+	99	33242393	-	CpB1062	-	hypothetical protein
1059	 46.22	+1	1172034..1172933	-	299	33242394	xerD	CpB1063	-	site-specific tyrosine recombinase XerD
1060	 44.09	+1	1173005..1174585	+	526	33242395	pgi	CpB1064	-	glucose-6-phosphate isomerase
1061	 45.83	+1	1174700..1174843	+	47	33242396	-	CpB1065	-	late stage protein
1062	 43.52	0	1174878..1176458	+	526	33242397	-	CpB1066	-	hypothetical protein
1063	 46.21	+1	1176701..1177702	+	333	33242398	-	CpB1067	-	malate dehydrogenase
1064	 38.21	0	1177708..1178547	+	279	33242399	-	CpB1069	-	hypothetical protein
1065	 45.37	+1	1178540..1179586	-	348	33242400	-	CpB1068	-	putative D-amino acid dehydrogenase
1066	 36.56	-1	1179577..1179762	-	61	33242401	-	CpB1070	-	hypothetical protein
1067	 43.55	0	1179795..1181252	-	485	33242402	-	CpB1071	-	arginine/ornithine antiporter protein
1068	 42.01	0	1181263..1181850	-	195	33242403	-	CpB1072	-	hypothetical protein
1069	 42.18	0	1181884..1183308	-	474	33242404	-	CpB1073	-	hypothetical protein
1070	 42.46	0	1183429..1184217	-	262	33242405	-	CpB1074	-	putative outer membrane protein
1071	 43.58	0	1184267..1185700	-	477	161484681	aroDE	CpB1075	-	bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein
1072	 40.07	0	1185681..1186823	-	380	33242407	aroB	CpB1076	-	3-dehydroquinate synthase
1073	 46.39	+1	1186820..1187899	-	359	33242408	-	CpB1077	-	chorismate synthase
1074	 40.87	0	1187896..1188426	-	176	33242409	-	CpB1078	-	shikimate kinase
1075	 43.50	0	1188362..1189699	-	445	33242410	-	CpB1079	-	3-phosphoshikimate 1-carboxyvinyltransferase
1076	 40.33	0	1189770..1190441	-	223	33242411	-	CpB1080	-	hypothetical protein
1077	 44.65	+1	1190423..1191694	-	423	33242412	-	CpB1081	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
1078	 42.42	0	1191631..1192290	-	219	33242413	-	CpB1082	-	dethiobiotin synthase
1079	 41.95	0	1192269..1193417	-	382	33242414	-	CpB1083	-	8-amino-7-oxononanoate synthase
1080	 43.78	0	1193396..1194391	-	331	33242415	-	CpB1084	-	biotin synthetase
1081	 38.20	0	1194598..1195296	-	232	33242416	-	CpB1085	-	hypothetical protein
1082	 38.66	0	1195287..1196375	-	362	33242417	phhA	CpB1086	-	phenylalanine 4-monooxygenase
1083	 42.15	0	1196264..1197046	+	260	33242418	-	CpB1088	-	dihydrodipicolinate reductase
1084	 35.42	-1	1197024..1197215	-	63	33242419	-	CpB1087	-	hypothetical protein
1085	 42.42	0	1197306..1198307	+	333	33242420	-	CpB1089	-	aspartate-semialdehyde dehydrogenase
1086	 41.04	0	1198295..1199617	+	440	33242421	-	CpB1090	-	aspartate kinase
1087	 42.12	0	1199626..1200501	+	291	33242422	dapA	CpB1091	-	dihydrodipicolinate synthase
1088	 32.37	-2	1200662..1200973	+	103	33242423	-	CpB1092	-	hypothetical protein
1089	 36.24	-1	1201117..1201872	+	251	33242424	-	CpB1093	-	hypothetical protein
1090	 36.59	-1	1201853..1202404	+	183	33242425	-	CpB1095	-	hypothetical protein
1091	 32.35	-2	1202388..1202489	-	33	33242426	-	CpB1094	-	hypothetical protein
1092	 43.08	0	1205398..1206228	+	276	33242427	-	CpB1097	-	Hb4
1093	 40.99	0	1206231..1206935	+	234	33242428	-	CpB1098	-	hypothetical protein
1094	 41.42	0	1207201..1209303	+	700	33242429	-	CpB1099	-	hypothetical protein
1095	 41.85	0	1209452..1210543	+	363	33242430	-	CpB1100	-	hypothetical protein
1096	 41.73	0	1210552..1211385	+	277	33242431	ksgA	CpB1101	-	dimethyladenosine transferase
1097	 43.20	0	1211428..1213362	-	644	33242432	-	CpB1102	-	1-deoxy-D-xylulose-5-phosphate synthase
1098	 34.11	-2	1213367..1213624	-	85	33242433	-	CpB1103	-	hypothetical protein
1099	 42.98	0	1213629..1213856	-	75	33242434	xseB	CpB1104	-	exodeoxyribonuclease VII small subunit
1100	 43.66	0	1213860..1215524	-	554	33242435	xseA	CpB1105	-	exodeoxyribonuclease VII large subunit
1101	 43.01	0	1215655..1216419	+	254	33242436	tpiA	CpB1106	-	triosephosphate isomerase
1102	 40.94	0	1216432..1216602	+	56	33242437	-	CpB1107	-	hypothetical protein
1103	 36.84	-1	1216629..1216799	-	56	33242438	-	CpB1108	-	hypothetical protein
1104	 39.78	0	1216839..1217195	+	118	33242439	secG	CpB1109	-	preprotein translocase subunit SecG
1105	 33.99	-2	1217209..1217361	-	50	33242440	-	CpB1110	-	hypothetical protein
1106	 40.98	0	1217385..1217999	+	204	33242441	def	CpB1111	-	peptide deformylase
1107	 39.58	0	1218066..1218962	-	298	33242442	-	CpB1112	-	ribonuclease HIII
1108	 31.15	-2	1219052..1219234	-	60	33242443	-	CpB1113	-	hypothetical protein
1109	 38.66	0	1219217..1219648	+	143	33242444	-	CpB1114	-	putative HTH transcription regulator
1110	 45.66	+1	1219845..1221215	-	456	33242445	-	CpB1115	-	hypothetical protein
1111	 41.09	0	1221587..1223029	-	480	33242446	-	CpB1116	-	hypothetical protein
1112	 42.76	0	1223674..1224543	+	289	33242447	-	CpB1117	-	hypothetical protein
1113	 42.30	0	1224716..1225540	+	274	33242448	-	CpB1118	-	putative outer membrane protein
40.62	MEAN

3.18	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.