IslandPath Analysis: Chlamydophila pneumoniae TW-183



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.62   STD DEV: 3.18
Chlamydophila pneumoniae TW-183, complete genome - 1..1225935
1113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
965	 46.38	+1	1066304..1066441	-	45	33242300	rpmH	CpB0969	-	50S ribosomal protein L34
966	 39.86	0	1066686..1066823	+	45	33242301	rpmJ	CpB0970	-	50S ribosomal protein L36
967	 39.54	0	1066846..1067151	+	101	33242302	rpsN	CpB0971	-	30S ribosomal protein S14
968	 36.06	-1	1067196..1067672	-	158	33242303	-	CpB0972	-	hypothetical protein
969	 38.00	0	1068078..1068548	+	156	33242304	-	CpB0973	-	hypothetical protein
970	 41.50	0	1068551..1070362	-	603	33242305	uvrC	CpB0974	-	excinuclease ABC subunit C
971	 41.94	0	1070365..1072851	-	828	33242306	mutS	CpB0975	-	DNA mismatch repair protein
972	 41.36	0	1072944..1073105	-	53	33242307	-	CpB0976	-	hypothetical protein
973	 40.27	0	1073335..1075107	+	590	33242308	dnaG	CpB0977	-	DNA primase
974	 40.15	0	1075328..1075591	+	87	33242309	-	CpB0978	-	hypothetical protein
975	 43.35	0	1075862..1076350	+	162	33242310	-	CpB0979	-	hypothetical protein
976	 43.10	0	1076420..1077013	+	197	33242311	-	CpB0980	-	hypothetical protein
977	 41.21	0	1077092..1080124	-	1010	33242312	-	CpB0981	-	glycyl-tRNA synthetase
978	 36.92	-1	1080167..1080361	-	64	33242313	-	CpB0982	-	hypothetical protein
979	 39.45	0	1080792..1081412	+	206	33242314	-	CpB0984	-	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
980	 40.95	0	1081394..1082824	-	476	33242315	glgA	CpB0983	-	glycogen synthase
981	 35.94	-1	1083045..1083236	+	63	33242316	-	CpB0985	-	hypothetical protein
982	 38.71	0	1083279..1083836	+	185	33242317	-	CpB0986	-	50S ribosomal protein L25/general stress protein Ctc
983	 41.80	0	1083838..1084380	+	180	33242318	-	CpB0987	-	peptidyl-tRNA hydrolase
984	 37.46	0	1084472..1084810	+	112	33242319	rpsF	CpB0988	-	30S ribosomal protein S6
985	 36.14	-1	1084828..1085076	+	82	33242320	rpsR	CpB0989	-	30S ribosomal protein S18
986	 38.82	0	1085092..1085601	+	169	33242321	rplI	CpB0990	-	50S ribosomal protein L9
987	 39.91	0	1085636..1086061	+	141	33242322	-	CpB0991	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
988	 39.24	0	1086004..1086528	+	174	33242323	-	CpB0992	-	putative kinase
989	 40.95	0	1086910..1088262	+	450	33242324	-	CpB0993	-	hypothetical protein
990	 40.76	0	1088310..1091138	-	942	33242325	-	CpB0994	-	protein-degrading enzyme
991	 37.75	0	1091140..1092135	-	331	33242326	-	CpB0995	-	glycerol-3-phosphate acyltransferase
992	 38.31	0	1092146..1093693	-	515	33242327	-	CpB0996	-	cytosolic axial filament protein cafA and ribonuclease E
993	 41.13	0	1093994..1094455	+	153	33242328	-	CpB0997	-	hypothetical protein
994	 40.98	0	1094468..1094650	+	60	33242329	rpmF	CpB0998	-	50S ribosomal protein L32
995	 42.89	0	1094666..1095628	+	320	33242330	-	CpB0999	-	putative glycerol-3-phosphate acyltransferase PlsX
996	 39.71	0	1095814..1100577	+	1587	33242331	-	CpB1000	-	outer membrane protein 11
997	 40.76	0	1100648..1102102	-	484	33242332	-	CpB1001	-	hypothetical protein
998	 41.10	0	1102272..1104086	-	604	33242333	lpxB	CpB1002	-	lipid-A-disaccharide synthase
999	 37.41	-1	1104095..1105345	-	416	33242334	-	CpB1003	-	poly(A) polymerase
1000	 42.41	0	1105862..1107238	+	458	33242335	-	CpB1004	-	phosphohexosemutase
1001	 41.42	0	1107245..1109074	+	609	33242336	-	CpB1005	-	D-fructose-6-phosphate amidotransferase
1002	 40.13	0	1109162..1110352	+	396	33242337	-	CpB1006	-	tyrosine-specific transport protein
1003	 41.14	0	1110403..1111119	+	238	33242338	-	CpB1007	-	putative transport permease
1004	 41.26	0	1111128..1112060	-	310	33242339	-	CpB1008	-	ftsY cell division protein
1005	 43.93	+1	1112071..1113231	+	386	33242340	sucC	CpB1009	-	succinyl-CoA synthetase subunit beta
1006	 48.41	+2	1113245..1114126	+	293	33242341	-	CpB1010	-	succinyl-CoA synthetase subunit alpha
1007	 36.84	-1	1114378..1114548	+	56	33242342	-	CpB1011	-	hypothetical protein
1008	 42.96	0	1114937..1115341	+	134	33242343	-	CpB1012	-	hypothetical protein
1009	 40.29	0	1115783..1116889	+	368	33242344	-	CpB1013	-	hypothetical protein
1010	 39.90	0	1117072..1118106	+	344	33242345	-	CpB1014	-	hypothetical protein
1011	 39.15	0	1118366..1119397	+	343	33242346	-	CpB1015	-	hypothetical protein
1012	 42.36	0	1119696..1121147	+	483	33242347	htrA	CpB1016	-	serine protease DO
1013	 41.63	0	1121202..1122683	-	493	33242348	-	CpB1017	-	hypothetical protein
1014	 41.68	0	1122732..1125656	+	974	33242349	-	CpB1018	-	putative zinc metalloproteinase
1015	 40.13	0	1125660..1126895	-	411	33242350	-	CpB1019	-	hypothetical protein
1016	 40.98	0	1126904..1127701	-	265	33242351	-	CpB1020	-	CDP-diacylglycerol-serine O-phosphatidyltransferase
1017	 40.93	0	1128080..1131214	+	1044	33242352	-	CpB1021	-	ribonucleotide-diphosphate reductase subunit alpha
1018	 37.80	0	1131178..1132275	+	365	33242353	-	CpB1022	-	ribonucleotide-diphosphate reductase subunit beta
1019	 39.56	0	1132425..1133099	+	224	33242354	trmB	CpB1023	-	tRNA (guanine-N(7))-methyltransferase
1020	 42.45	0	1133217..1133819	+	200	33242355	-	CpB1025	-	putative rRNA methylase
1021	 44.26	+1	1133773..1134669	-	298	33242356	murB	CpB1024	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1022	 35.61	-1	1134714..1135109	-	131	33242357	nusB	CpB1026	-	transcription antitermination protein NusB
1023	 38.17	0	1135494..1135679	-	61	33242358	-	CpB1027	-	hypothetical protein
1024	 37.91	0	1135687..1136145	+	152	33242359	infC	CpB1028	-	translation initiation factor IF-3
1025	 38.46	0	1136123..1136317	+	64	33242360	rpmI	CpB1029	-	50S ribosomal protein L35
1026	 41.80	0	1136336..1136701	+	121	33242361	rplT	CpB1030	-	50S ribosomal protein L20
1027	 39.61	0	1136716..1137735	+	339	33242362	pheS	CpB1031	-	phenylalanyl-tRNA synthetase subunit alpha
1028	 37.88	0	1138100..1140145	+	681	33242363	-	CpB1033	-	hypothetical protein
1029	 39.69	0	1140114..1141214	-	366	33242364	-	CpB1032	-	hypothetical protein
1030	 38.55	0	1141218..1142291	-	357	33242365	-	CpB1034	-	hypothetical protein
1031	 38.54	0	1142410..1143369	+	319	33242366	-	CpB1035	-	putative p-loop ATPase
1032	 43.14	0	1143557..1146289	+	910	33242367	ftsH	CpB1036	-	hypothetical protein
1033	 40.43	0	1146465..1148549	-	694	33242368	-	CpB1037	-	polynucleotide phosphorylase/polyadenylase
1034	 35.93	-1	1148590..1148859	-	89	33242369	rpsO	CpB1038	-	30S ribosomal protein S15
1035	 44.52	+1	1149128..1149574	+	148	33242370	-	CpB1039	-	putative cytosine deaminase
1036	 42.42	0	1149564..1149794	+	76	33242371	-	CpB1040	-	hypothetical protein
1037	 41.38	0	1149791..1150498	-	235	33242372	-	CpB1041	-	hypothetical protein
1038	 40.80	0	1150578..1151099	-	173	33242373	-	CpB1042	-	hypothetical protein
1039	 40.04	0	1151114..1151635	-	173	33242374	-	CpB1043	-	hypothetical protein
1040	 35.90	-1	1151689..1152078	-	129	33242375	-	CpB1044	-	hypothetical protein
1041	 40.09	0	1152392..1152613	+	73	33242376	-	CpB1045	-	hypothetical protein
1042	 40.49	0	1152631..1153929	+	432	33242377	-	CpB1047	-	hypothetical protein
1043	 43.26	0	1153886..1154761	-	291	161484682	-	CpB1046	-	methionine aminopeptidase
1044	 40.89	0	1154767..1155375	-	202	33242379	-	CpB1048	-	hypothetical protein
1045	 43.63	0	1155602..1156009	-	135	33242380	-	CpB1049	-	hypothetical protein
1046	 42.29	0	1156121..1157896	-	591	33242381	-	CpB1050	-	ABC transporter
1047	 40.27	0	1157948..1159330	+	460	33242382	fumC	CpB1051	-	fumarate hydratase
1048	 43.76	0	1159432..1161129	-	565	33242383	-	CpB1052	-	sulfate transporter
1049	 40.62	0	1161337..1162599	+	420	33242384	-	CpB1053	-	hypothetical protein
1050	 41.45	0	1162745..1164604	+	619	33242385	-	CpB1054	-	hypothetical protein
1051	 41.48	0	1164709..1165641	+	310	33242386	ispH	CpB1055	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1052	 39.46	0	1165601..1166335	+	244	33242387	-	CpB1056	-	hypothetical protein
1053	 42.92	0	1166338..1167693	-	451	33242388	-	CpB1057	-	hypothetical protein
1054	 40.74	0	1167700..1167861	+	53	33242389	-	CpB1059	-	hypothetical protein
1055	 39.14	0	1167850..1169382	-	510	33242390	-	CpB1058	-	hypothetical protein
1056	 36.80	-1	1169398..1169916	-	172	33242391	-	CpB1060	-	chaperone SycD
1057	 41.75	0	1169916..1171376	-	486	33242392	-	CpB1061	-	hypothetical protein
1058	 39.33	0	1171738..1172037	+	99	33242393	-	CpB1062	-	hypothetical protein
1059	 46.22	+1	1172034..1172933	-	299	33242394	xerD	CpB1063	-	site-specific tyrosine recombinase XerD
1060	 44.09	+1	1173005..1174585	+	526	33242395	pgi	CpB1064	-	glucose-6-phosphate isomerase
1061	 45.83	+1	1174700..1174843	+	47	33242396	-	CpB1065	-	late stage protein
1062	 43.52	0	1174878..1176458	+	526	33242397	-	CpB1066	-	hypothetical protein
1063	 46.21	+1	1176701..1177702	+	333	33242398	-	CpB1067	-	malate dehydrogenase
1064	 38.21	0	1177708..1178547	+	279	33242399	-	CpB1069	-	hypothetical protein
40.62	MEAN

3.18	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.