IslandPathversion 1.0

IslandPath Analysis: Chlamydophila pneumoniae AR39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.53 STD DEV: 3.43
Chlamydophila pneumoniae AR39, complete genome - 1..1229853
1112 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
902	 36.19	-1	993497..993601	-	34	16752089	-	CP0918	-	hypothetical protein
903	 40.39	0	993658..995442	-	594	16752090	dnaG	CP0919	-	DNA primase
904	 41.94	0	995914..998400	+	828	16752091	-	CP0920	-	DNA mismatch repair protein
905	 41.50	0	998403..1000214	+	603	16752092	uvrC	CP0921	-	excinuclease ABC subunit C
906	 38.00	0	1000217..1000687	-	156	16752093	-	CP0922	-	hypothetical protein
907	 35.85	-1	1001093..1001569	+	158	16752094	-	CP0923	-	hypothetical protein
908	 39.54	0	1001614..1001919	-	101	16752095	rpsN	CP0924	-	30S ribosomal protein S14
909	 39.86	0	1001942..1002079	-	45	16752096	rpmJ	CP0925	-	50S ribosomal protein L36
910	 46.38	+1	1002324..1002461	+	45	16753063	rpmH	CP0926	-	50S ribosomal protein L34
911	 44.29	+1	1002473..1002892	+	139	16752097	rnpA	CP0927	-	ribonuclease P
912	 42.02	0	1002834..1003880	-	348	16752098	-	CP0928	-	hypothetical protein
913	 30.16	-2	1003942..1004067	+	41	16752099	-	CP0929	-	hypothetical protein
914	 22.46	-2	1004064..1004201	+	45	16752100	-	CP0930	-	hypothetical protein
915	 42.25	0	1004273..1005697	+	474	16752101	cysS	CP0931	-	cysteinyl-tRNA synthetase
916	 41.04	0	1005694..1007277	-	527	16752102	lysS	CP0932	-	lysyl-tRNA synthetase
917	 35.46	-1	1007419..1007559	-	46	16752103	-	CP0933	-	hypothetical protein
918	 34.15	-1	1007684..1007806	-	40	16752104	-	CP0934	-	hypothetical protein
919	 45.07	+1	1008082..1008558	-	158	16752105	-	CP0935	-	hypothetical protein
920	 43.48	0	1008956..1009093	+	45	16752106	-	CP0936	-	hypothetical protein
921	 41.35	0	1009123..1010232	+	369	16752107	-	CP0937	-	hypothetical protein
922	 41.69	0	1010434..1011534	+	366	16752108	-	CP0938	-	hypothetical protein
923	 42.17	0	1011606..1012748	+	380	16752109	-	CP0939	-	hypothetical protein
924	 41.92	0	1012855..1013355	-	166	16752110	-	CP0940	-	hypothetical protein
925	 38.35	0	1013515..1014192	+	225	16752111	-	CP0941	-	hypothetical protein
926	 42.89	0	1014141..1016390	+	749	16752112	-	CP0942	-	primosome assembly protein PriA
927	 40.79	0	1016319..1017431	-	370	16752113	-	CP0943	-	8-amino-7-oxononanoate synthase
928	 41.25	0	1017485..1019101	-	538	16752114	-	CP0944	-	long chain fatty acid--[acyl-carrier-protein] ligase
929	 39.90	0	1019119..1019880	-	253	16752115	-	CP0945	-	hypothetical protein
930	 41.72	0	1020010..1020987	+	325	16752116	-	CP0946	-	3'(2'),5'-bisphosphate nucleotidase
931	 42.71	0	1020982..1022037	-	351	16752117	-	CP0947	-	Glu/Leu/Phe/Val dehydrogenase family protein
932	 39.20	0	1022192..1022839	+	215	16752118	-	CP0948	-	inorganic pyrophosphatase
933	 36.87	-1	1022873..1023325	-	150	16752119	-	CP0949	-	MutT/Nudix family protein
934	 44.36	+1	1023328..1024578	-	416	16752120	-	CP0950	-	3-oxoacyl-(acyl carrier protein) synthase II
935	 35.56	-1	1024595..1024954	-	119	16752121	-	CP0951	-	iojap-related protein
936	 39.55	0	1025015..1025416	-	133	16752122	-	CP0952	-	hypothetical protein
937	 35.98	-1	1025467..1025655	-	62	16752123	-	CP0953	-	hypothetical protein
938	 38.15	0	1025652..1027313	-	553	16752124	-	CP0954	-	hypothetical protein
939	 42.00	0	1027399..1028460	+	353	16752125	-	CP0955	-	hypothetical protein
940	 38.78	0	1028435..1029463	-	342	16752126	miaA	CP0956	-	tRNA delta(2)-isopentenylpyrophosphate transferase
941	 37.54	0	1029473..1029805	-	110	16752127	-	CP0957	-	anti-anti-sigma factor
942	 37.53	0	1029880..1030665	+	261	16752128	-	CP0958	-	hypothetical protein
943	 42.18	0	1030662..1031000	+	112	16752129	-	CP0959	-	periplasmic divalent cation tolerance protein CutA1
944	 37.06	-1	1031102..1031530	+	142	16752130	-	CP0960	-	hypothetical protein
945	 40.95	0	1031604..1034033	-	809	16752131	-	CP0961	-	UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
946	 42.74	0	1034043..1035116	-	357	16752132	murG	CP0962	-	N-acetylglucosaminyl transferase
947	 43.26	0	1035022..1036179	-	385	16752133	-	CP0963	-	cell division protein FtsW
948	 43.87	0	1036198..1036899	-	233	16752134	-	CP0964	-	hypothetical protein
949	 42.03	0	1036902..1038155	-	417	16752135	murD	CP0965	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
950	 42.38	0	1038158..1039207	-	349	16752136	mraY	CP0966	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
951	 41.74	0	1039224..1040567	-	447	16752137	-	CP0967	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
952	 40.32	0	1040982..1042541	+	519	16752138	-	CP0968	-	60 kDa chaperonin, putative
953	 41.89	0	1042705..1043592	+	295	16752139	-	CP0969	-	hypothetical protein
954	 38.29	0	1043617..1043838	-	73	16752140	-	CP0970	-	hypothetical protein
955	 42.58	0	1043882..1044454	-	190	16752141	-	CP0971	-	elongation factor P
956	 41.61	0	1044676..1045557	+	293	16752142	-	CP0972	-	AMP nucleosidase
957	 42.64	0	1045551..1047548	-	665	16752143	-	CP0973	-	transketolase
958	 42.42	0	1047781..1050399	+	872	16752144	alaS	CP0974	-	alanyl-tRNA synthetase
959	 41.31	0	1050369..1053626	+	1085	16752145	-	CP0975	-	transcription-repair coupling factor
960	 40.30	0	1053637..1054626	+	329	16752146	hemE	CP0976	-	uroporphyrinogen decarboxylase
961	 40.38	0	1054607..1055983	+	458	16752147	-	CP0977	-	coproporphyrinogen III oxidase
962	 43.88	0	1056019..1057326	+	435	16752148	-	CP0978	-	protoporphyrinogen oxidase
963	 42.04	0	1057282..1059750	-	822	16752149	-	CP0979	-	hypothetical protein
964	 38.17	0	1060166..1060537	+	123	16752150	-	CP0980	-	histone H1-like protein HC1
965	 40.71	0	1060807..1062012	+	401	16752151	-	CP0981	-	RNA methyltransferase
966	 38.42	0	1062083..1062436	+	117	16752152	yajC	CP0982	-	preprotein translocase subunit YajC
967	 40.43	0	1062577..1063872	+	431	16752153	-	CP0983	-	Na(+)-translocating NADH-quinone reductase subunit F
968	 41.47	0	1064035..1064931	-	298	16752154	-	CP0984	-	hypothetical protein
969	 44.25	+1	1065045..1065392	+	115	16752155	-	CP0985	-	hypothetical protein
970	 42.67	0	1065230..1065775	-	181	16752156	-	CP0986	-	hypothetical protein
971	 47.47	+2	1066555..1067205	+	216	16752157	-	CP0987	-	hypothetical protein
972	 48.43	+2	1069264..1069422	+	52	16752158	-	CP0988	-	hypothetical protein
973	 39.07	0	1071581..1074001	+	806	16752159	-	CP0989	-	cell division protein FtsK, putative
974	 39.47	0	1074003..1074800	+	265	16752160	-	CP0990	-	hypothetical protein
975	 41.74	0	1074788..1075453	+	221	16752161	-	CP0991	-	hypothetical protein
976	 44.59	+1	1075457..1075909	-	150	16752162	-	CP0992	-	hypothetical protein
977	 43.86	0	1075922..1077298	-	458	16752163	-	CP0993	-	sodium/alanine symporter family protein
978	 42.20	0	1077417..1078070	-	217	16752164	-	CP0994	-	hypothetical protein
979	 42.22	0	1078335..1079696	+	453	16752165	-	CP0995	-	hypothetical protein
980	 41.94	0	1079745..1080209	-	154	16752166	ribH	CP0996	-	riboflavin synthase subunit beta
981	 42.80	0	1080223..1081479	-	418	16752167	-	CP0997	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
982	 45.62	+1	1081540..1082670	-	376	16752168	-	CP0998	-	riboflavin-specific deaminase
983	 42.37	0	1082714..1083997	+	427	16752169	-	CP0999	-	seryl-tRNA synthetase
984	 39.22	0	1084041..1084787	+	248	16752170	-	CP1000	-	hypothetical protein
985	 41.91	0	1084724..1086775	+	683	16752171	-	CP1001	-	cation transporter E1-E2 family ATPase
986	 42.37	0	1086772..1087911	-	379	16752172	-	CP1002	-	cell shape-determining protein MrdB
987	 41.62	0	1087951..1088529	+	192	16752173	-	CP1003	-	biotin--protein ligase
988	 42.42	0	1088497..1089024	-	175	16752174	-	CP1004	-	hypothetical protein
989	 42.66	0	1089065..1089772	-	235	16752175	-	CP1005	-	ribosomal large subunit pseudouridine synthase B
990	 39.45	0	1089928..1090614	+	228	16752176	-	CP1006	-	phosphoglyceromutase
991	 43.98	+1	1090569..1091723	+	384	16752177	-	CP1007	-	nifS protein, putative
992	 42.95	0	1091720..1092520	+	266	16752178	-	CP1008	-	nifU protein, putative
993	 38.79	0	1092812..1093837	+	341	16752179	-	CP1009	-	type III secretion system protein
994	 43.39	0	1093854..1094390	+	178	16752180	-	CP1010	-	hypothetical protein
995	 44.62	+1	1094387..1095688	+	433	16752181	-	CP1011	-	type III secretion system ATPase
996	 31.98	-2	1095685..1096053	+	122	16752182	-	CP1012	-	hypothetical protein
997	 42.06	0	1096065..1097450	+	461	16752183	-	CP1013	-	UDP-N-acetylglucosamine pyrophosphorylase, putative
998	 45.27	+1	1097447..1098451	+	334	16752184	gpsA	CP1014	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
999	 43.19	0	1098605..1099639	+	344	16752185	-	CP1015	-	major outer membrane protein, putative
1000	 40.77	0	1099636..1100805	-	389	16752186	-	CP1016	-	hypothetical protein
1001	 40.42	0	1100826..1103126	-	766	16752187	-	CP1017	-	hypothetical protein
40.53	MEAN

3.43	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.