IslandPath Analysis: Chlamydophila pneumoniae AR39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.53   STD DEV: 3.43
Chlamydophila pneumoniae AR39, complete genome - 1..1229853
1112 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
815	 39.33	0	895080..895379	-	99	16752002	-	CP0829	-	hypothetical protein
816	 29.91	-2	895628..895744	+	38	16752003	-	CP0830	-	hypothetical protein
817	 41.82	0	895741..897201	+	486	16752004	-	CP0831	-	hypothetical protein
818	 36.80	-1	897201..897719	+	172	16752005	-	CP0832	-	type III secretion chaperone
819	 39.14	0	897735..899267	+	510	16752006	-	CP0833	-	hypothetical protein
820	 43.04	0	899286..900779	+	497	16752007	-	CP0834	-	hypothetical protein
821	 39.55	0	900782..901441	-	219	16752008	-	CP0835	-	hypothetical protein
822	 41.48	0	901476..902408	-	310	16752009	ispH	CP0836	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
823	 41.40	0	902513..904372	-	619	16752010	-	CP0837	-	hypothetical protein
824	 40.74	0	904518..905786	-	422	16752011	-	CP0838	-	hypothetical protein
825	 43.82	0	905988..907685	+	565	16752012	-	CP0839	-	sulfate transporter family protein
826	 40.27	0	907787..909169	-	460	16752013	fumC	CP0840	-	fumarate hydratase
827	 42.34	0	909221..910996	+	591	16752014	-	CP0841	-	ABC transporter, permease protein, putative
828	 41.05	0	911742..912350	+	202	16752015	-	CP0843	-	hypothetical protein
829	 43.26	0	912356..913231	+	291	161353775	-	CP0844	-	methionine aminopeptidase
830	 40.48	0	913188..914474	-	428	16752017	-	CP0845	-	hypothetical protein
831	 39.78	0	914504..914689	-	61	16752018	-	CP0846	-	hypothetical protein
832	 37.04	-1	914942..915427	+	161	16752019	-	CP0847	-	hypothetical protein
833	 40.04	0	915481..916002	+	173	16752020	-	CP0848	-	hypothetical protein
834	 40.80	0	916017..916538	+	173	16752021	-	CP0849	-	hypothetical protein
835	 41.53	0	916618..917325	+	235	16752022	-	CP0850	-	hypothetical protein
836	 42.42	0	917322..917552	-	76	16752023	-	CP0851	-	hypothetical protein
837	 43.16	0	917542..918009	-	155	16752024	-	CP0852	-	cytidine/deoxycytidylate deaminase family protein
838	 33.33	-2	918114..918245	+	43	16752025	-	CP0853	-	hypothetical protein
839	 35.93	-1	918257..918526	+	89	16752026	rpsO	CP0854	-	30S ribosomal protein S15
840	 40.48	0	918567..920651	+	694	16752027	-	CP0855	-	polynucleotide phosphorylase/polyadenylase
841	 34.41	-1	920723..920815	+	30	16752028	-	CP0856	-	hypothetical protein
842	 43.14	0	920827..923559	-	910	16752029	-	CP0857	-	cell division protein FtsH, putative
843	 38.54	0	923747..924706	-	319	16752030	-	CP0858	-	MesJ/Ycf62 family protein
844	 38.45	0	924825..925898	+	357	16752031	-	CP0859	-	hypothetical protein
845	 39.69	0	925902..927002	+	366	16752032	-	CP0860	-	hypothetical protein
846	 37.83	0	926971..929016	-	681	16752033	-	CP0861	-	hypothetical protein
847	 39.61	0	929381..930400	-	339	16752034	pheS	CP0862	-	phenylalanyl-tRNA synthetase subunit alpha
848	 41.80	0	930415..930780	-	121	16752035	rplT	CP0863	-	50S ribosomal protein L20
849	 38.46	0	930799..930993	-	64	16752036	rpmI	CP0864	-	50S ribosomal protein L35
850	 37.97	0	930971..931531	-	186	16752037	infC	CP0865	-	translation initiation factor IF-3
851	 37.40	0	931911..932402	+	163	16752038	nusB	CP0866	-	transcription antitermination protein NusB
852	 44.48	+1	932429..933343	+	304	16752039	murB	CP0867	-	UDP-N-acetylenolpyruvoylglucosamine reductase
853	 42.45	0	933297..933899	-	200	16752040	-	CP0868	-	hypothetical protein
854	 39.56	0	934017..934691	-	224	16752041	trmB	CP0869	-	tRNA (guanine-N(7))-methyltransferase
855	 36.43	-1	934688..934816	-	42	16752042	-	CP0870	-	hypothetical protein
856	 37.85	0	934841..935881	-	346	16752043	-	CP0871	-	ribonucleotide-diphosphate reductase subunit beta
857	 40.89	0	935902..939036	-	1044	16752044	-	CP0872	-	ribonucleotide-diphosphate reductase subunit alpha
858	 40.98	0	939415..940212	+	265	16752045	-	CP0873	-	CDP-diacylglycerol--serine O-phosphatidyltransferase, putative
859	 40.13	0	940221..941456	+	411	16752046	-	CP0874	-	hypothetical protein
860	 41.68	0	941460..944384	-	974	16752047	-	CP0875	-	insulinase family metalloprotease
861	 41.63	0	944433..945914	+	493	16752048	-	CP0876	-	M20/M25/M40 family peptidase
862	 42.13	0	945969..947435	-	488	16752049	-	CP0877	-	serine protease
863	 39.15	0	947719..948750	-	343	16752050	-	CP0878	-	hypothetical protein
864	 39.92	0	949010..950041	-	343	16752051	-	CP0879	-	hypothetical protein
865	 40.31	0	950227..951330	-	367	16752052	-	CP0880	-	hypothetical protein
866	 23.19	-2	951408..951545	-	45	16752053	-	CP0881	-	hypothetical protein
867	 42.63	0	951775..952269	-	164	16752054	-	CP0882	-	hypothetical protein
868	 38.52	0	952378..952512	-	44	16752055	-	CP0883	-	hypothetical protein
869	 40.74	0	952807..952941	-	44	16752056	-	CP0884	-	hypothetical protein
870	 48.41	+2	952990..953871	-	293	16752057	-	CP0885	-	succinyl-CoA synthetase subunit alpha
871	 43.93	0	953885..955045	-	386	16752058	sucC	CP0886	-	succinyl-CoA synthetase subunit beta
872	 42.27	0	955116..955988	+	290	16752059	-	CP0887	-	signal recognition particle protein FtsY
873	 41.14	0	955997..956713	-	238	16752060	-	CP0888	-	hypothetical protein
874	 40.30	0	956764..957954	-	396	16752061	-	CP0889	-	Mtr/TnaB/TyrO permease family protein
875	 41.12	0	958042..958362	-	106	16752062	-	CP0890	-	hypothetical protein
876	 40.22	0	958413..959603	-	396	16752063	-	CP0891	-	Mtr/TnaB/TyrO permease family protein
877	 41.42	0	959691..961520	-	609	16752064	-	CP0892	-	D-fructose-6-phosphate amidotransferase
878	 42.41	0	961527..962903	-	458	16752065	-	CP0893	-	phosphoglucomutase/phosphomannomutase family protein
879	 37.74	0	963378..964670	+	430	16752066	-	CP0894	-	poly(A) polymerase family protein
880	 41.10	0	964679..966493	+	604	16752067	lpxB	CP0895	-	lipid-A-disaccharide synthase
881	 40.73	0	966657..968117	+	486	16752068	-	CP0896	-	hypothetical protein
882	 39.61	0	968188..973017	-	1609	16752069	-	CP0897	-	polymorphic membrane protein D family protein
883	 42.89	0	973137..974099	-	320	16752070	-	CP0898	-	putative glycerol-3-phosphate acyltransferase PlsX
884	 40.98	0	974115..974297	-	60	16752071	rpmF	CP0899	-	50S ribosomal protein L32
885	 42.40	0	974310..974651	-	113	16752072	-	CP0900	-	hypothetical protein
886	 38.31	0	975072..976619	+	515	16752073	-	CP0901	-	ribonuclease G
887	 37.75	0	976630..977625	+	331	16752074	-	CP0902	-	glycerol-3-phosphate acyltransferase, putative
888	 40.76	0	977627..980455	+	942	16752075	-	CP0903	-	insulinase family metalloprotease
889	 40.95	0	980503..981855	-	450	16752076	-	CP0904	-	hypothetical protein
890	 39.02	0	983164..983673	-	169	16752077	rplI	CP0906	-	50S ribosomal protein L9
891	 36.14	-1	983689..983937	-	82	16752078	rpsR	CP0907	-	30S ribosomal protein S18
892	 37.46	0	983955..984293	-	112	16752079	rpsF	CP0908	-	30S ribosomal protein S6
893	 41.80	0	984385..984927	-	180	16752080	-	CP0909	-	peptidyl-tRNA hydrolase
894	 38.71	0	984929..985486	-	185	16752081	-	CP0910	-	50S ribosomal protein L25/general stress protein Ctc
895	 40.95	0	985941..987371	+	476	16752082	glgA	CP0911	-	glycogen synthase
896	 39.45	0	987353..987973	-	206	16752083	-	CP0912	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
897	 41.21	0	988641..991673	+	1010	16752084	-	CP0913	-	glycyl-tRNA synthetase, tetrameric type, alpha/beta subunits
898	 43.10	0	991752..992345	-	197	16752085	-	CP0914	-	hypothetical protein
899	 43.35	0	992415..992903	-	162	16752086	-	CP0915	-	hypothetical protein
900	 35.77	-1	993049..993171	-	40	16752087	-	CP0916	-	hypothetical protein
901	 40.15	0	993174..993437	-	87	16752088	-	CP0917	-	hypothetical protein
902	 36.19	-1	993497..993601	-	34	16752089	-	CP0918	-	hypothetical protein
903	 40.39	0	993658..995442	-	594	16752090	dnaG	CP0919	-	DNA primase
904	 41.94	0	995914..998400	+	828	16752091	-	CP0920	-	DNA mismatch repair protein
905	 41.50	0	998403..1000214	+	603	16752092	uvrC	CP0921	-	excinuclease ABC subunit C
906	 38.00	0	1000217..1000687	-	156	16752093	-	CP0922	-	hypothetical protein
907	 35.85	-1	1001093..1001569	+	158	16752094	-	CP0923	-	hypothetical protein
908	 39.54	0	1001614..1001919	-	101	16752095	rpsN	CP0924	-	30S ribosomal protein S14
909	 39.86	0	1001942..1002079	-	45	16752096	rpmJ	CP0925	-	50S ribosomal protein L36
910	 46.38	+1	1002324..1002461	+	45	16753063	rpmH	CP0926	-	50S ribosomal protein L34
911	 44.29	+1	1002473..1002892	+	139	16752097	rnpA	CP0927	-	ribonuclease P
912	 42.02	0	1002834..1003880	-	348	16752098	-	CP0928	-	hypothetical protein
913	 30.16	-2	1003942..1004067	+	41	16752099	-	CP0929	-	hypothetical protein
914	 22.46	-2	1004064..1004201	+	45	16752100	-	CP0930	-	hypothetical protein
40.53	MEAN

3.43	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.