IslandPathversion 1.0

IslandPath Analysis: Chlamydophila pneumoniae AR39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.53 STD DEV: 3.43
Chlamydophila pneumoniae AR39, complete genome - 1..1229853
1112 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
38	 45.82	+1	46556..47884	+	442	16752333	-	CP0039	-	type III secretion system ATPase
39	 39.25	0	47902..48408	+	168	16752334	-	CP0040	-	hypothetical protein
40	 37.60	0	48412..49254	+	280	16752335	-	CP0041	-	hypothetical protein
41	 42.11	0	49264..50379	+	371	16752336	-	CP0042	-	type III secretion system protein
42	 40.23	0	50395..51903	+	502	16752337	-	CP0043	-	serine/threonine-protein kinase
43	 41.41	0	51900..54659	+	919	16752338	-	CP0044	-	type III secretion protein SctC
44	 37.70	0	54910..55986	-	358	16752339	-	CP0045	-	ATP:guanido phosphotransferase
45	 40.50	0	55973..56488	-	171	16752340	-	CP0046	-	hypothetical protein
46	 38.86	0	56861..57403	-	180	16752341	frr	CP0047	-	ribosome recycling factor
47	 39.89	0	57381..58127	-	248	16752342	pyrH	CP0048	-	uridylate kinase
48	 39.81	0	58135..58983	-	282	16752343	tsf	CP0049	-	elongation factor Ts
49	 38.13	0	58983..59816	-	277	16752344	rpsB	CP0050	-	30S ribosomal protein S2
50	 42.82	0	60200..61369	-	389	16752345	-	CP0051	-	major outer membrane protein, porin
51	 40.60	0	61985..65257	+	1090	16752346	-	CP0052	-	penicillin-binding protein, putative
52	 40.59	0	65328..66347	+	339	16752347	-	CP0053	-	type III secretion chaperone, putative
53	 41.92	0	66672..68126	+	484	16752348	-	CP0054	-	cysteine desulfurase activator complex subunit SufB
54	 40.86	0	68132..68902	+	256	16752349	-	CP0055	-	ABC transporter, ATP-binding protein
55	 41.27	0	68904..70151	+	415	16752350	-	CP0056	-	hypothetical protein
56	 42.51	0	70180..71400	+	406	16752351	-	CP0057	-	aminotransferase, class V
57	 40.58	0	71444..72202	-	252	16752352	-	CP0058	-	hypothetical protein
58	 40.37	0	72367..73020	-	217	16752353	-	CP0059	-	hypothetical protein
59	 40.74	0	73223..73411	+	62	16752354	-	CP0060	-	hypothetical protein
60	 31.58	-2	73364..73477	-	37	16752355	-	CP0061	-	hypothetical protein
61	 43.09	0	73546..74406	+	286	16752356	-	CP0062	-	ParB family chromosome partioning protein
62	 39.71	0	74387..74590	-	67	16752357	-	CP0063	-	hypothetical protein
63	 41.23	0	74662..75636	-	324	16752358	-	CP0064	-	peptide ABC transporter, ATP-binding protein
64	 43.90	0	75626..76600	-	324	16752359	-	CP0065	-	peptide ABC transporter, ATP-binding protein
65	 36.89	-1	76655..77329	+	224	16752360	-	CP0066	-	hypothetical protein
66	 42.86	0	77336..78616	+	426	16752361	-	CP0067	-	phosphate permease family protein
67	 44.33	+1	78654..79862	+	402	16752362	pgk	CP0068	-	phosphoglycerate kinase
68	 52.65	+2	80264..80905	+	213	16752363	-	CP0069	-	hypothetical protein
69	 45.69	+1	81183..82331	+	382	16752364	-	CP0070	-	hypothetical protein
70	 43.25	0	82367..83536	+	389	16752365	-	CP0071	-	hypothetical protein
71	 40.87	0	83665..84819	+	384	16752366	-	CP0072	-	hypothetical protein
72	 41.10	0	84916..86010	+	364	16752367	-	CP0073	-	Nol1/Nop2/Sun family protein
73	 37.78	0	86118..86297	-	59	16752368	-	CP0074	-	hypothetical protein
74	 44.09	+1	86533..87843	-	436	16752369	-	CP0075	-	D-alanyl-D-alanine carboxypeptidase
75	 40.09	0	87954..88382	+	142	16752370	-	CP0076	-	hypothetical protein
76	 40.62	0	88385..88837	-	150	16752371	-	CP0077	-	rsbW protein, putative
77	 38.83	0	88806..89405	-	199	16752372	-	CP0078	-	hypothetical protein
78	 39.92	0	89419..90375	-	318	16753067	-	CP0079	-	hypothetical protein
79	 43.39	0	90527..91411	+	294	16752373	-	CP0080	-	hypothetical protein
80	 40.26	0	91475..95197	-	1240	16752374	dnaE	CP0081	-	DNA polymerase III subunit alpha
81	 42.18	0	95217..96584	-	455	16752375	-	CP0082	-	GlpT/PgpT/UhpT family protein
82	 39.22	0	96828..97031	+	67	16752376	-	CP0083	-	hypothetical protein
83	 41.14	0	97395..98687	+	430	16752377	hisS	CP0084	-	histidyl-tRNA synthetase
84	 40.85	0	98662..100416	+	584	16752378	aspS	CP0085	-	aspartyl-tRNA synthetase
85	 38.61	0	100485..101261	+	258	16752379	-	CP0086	-	peptidyl-prolyl cis-trans isomerase Mip
86	 40.13	0	101258..101728	+	156	16752380	-	CP0087	-	spoU rRNA methylase family protein
87	 41.42	0	101744..102052	-	102	16752381	-	CP0088	-	thioredoxin
88	 39.75	0	102417..103133	+	238	16752382	-	CP0089	-	hypothetical protein
89	 39.91	0	103112..103537	+	141	16752383	-	CP0090	-	hypothetical protein
90	 41.44	0	103534..103644	-	36	16752384	-	CP0091	-	hypothetical protein
91	 37.20	0	103738..104487	+	249	16752385	-	CP0092	-	DNA polymerase III subunit epsilon
92	 41.45	0	104618..105085	+	155	16752386	-	CP0093	-	cytosolic acyl-CoA thioester hydrolase family protein
93	 42.44	0	105095..106720	+	541	16752387	lnt	CP0094	-	apolipoprotein N-acyltransferase
94	 39.35	0	106735..107598	+	287	16752388	lpxC	CP0095	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
95	 40.26	0	107610..108071	+	153	16752389	fabZ	CP0096	-	(3R)-hydroxymyristoyl-ACP dehydratase
96	 42.14	0	108084..108923	+	279	16752390	-	CP0097	-	UDP-N-acetylglucosamine acyltransferase
97	 44.82	+1	108913..109878	+	321	16752391	fmt	CP0098	-	methionyl-tRNA formyltransferase
98	 44.31	+1	109982..110983	+	333	16752392	-	CP0099	-	hypothetical protein
99	 41.36	0	111272..111931	+	219	16752393	rplC	CP0100	-	50S ribosomal protein L3
100	 36.89	-1	111964..112638	+	224	16752394	rplD	CP0101	-	50S ribosomal protein L4
101	 38.39	0	112655..112990	+	111	16752395	rplW	CP0102	-	50S ribosomal protein L23
102	 42.22	0	113012..113866	+	284	16752396	rplB	CP0103	-	50S ribosomal protein L2
103	 38.20	0	113872..114138	+	88	16752397	rpsS	CP0104	-	30S ribosomal protein S19
104	 41.67	0	114157..114492	+	111	16752398	rplV	CP0105	-	50S ribosomal protein L22
105	 41.82	0	114508..115179	+	223	16752399	rpsC	CP0106	-	30S ribosomal protein S3
106	 41.49	0	115208..115624	+	138	16752400	rplP	CP0107	-	50S ribosomal protein L16
107	 35.62	-1	115627..115845	+	72	16752401	rpmC	CP0108	-	50S ribosomal protein L29
108	 37.16	0	115838..116098	+	86	16752402	rpsQ	CP0109	-	30S ribosomal protein S17
109	 36.86	-1	116121..116489	+	122	16752403	rplN	CP0110	-	50S ribosomal protein L14
110	 39.58	0	116503..116838	+	111	16752404	rplX	CP0111	-	50S ribosomal protein L24
111	 37.75	0	116840..117382	+	180	16752405	rplE	CP0112	-	50S ribosomal protein L5
112	 41.54	0	117400..117801	+	133	16752406	rpsH	CP0113	-	30S ribosomal protein S8
113	 39.67	0	117828..118379	+	183	16752407	rplF	CP0114	-	50S ribosomal protein L6
114	 37.10	-1	118390..118761	+	123	16752408	rplR	CP0115	-	50S ribosomal protein L18
115	 39.16	0	118779..119276	+	165	16752409	rpsE	CP0116	-	30S ribosomal protein S5
116	 39.08	0	119269..119703	+	144	16752410	rplO	CP0117	-	50S ribosomal protein L15
117	 39.74	0	119728..121101	+	457	161353774	secY	CP0118	-	preprotein translocase subunit SecY
118	 37.40	0	121157..121525	+	122	16752412	rpsM	CP0119	-	30S ribosomal protein S13
119	 41.54	0	121547..121948	+	133	16752413	-	CP0120	-	30S ribosomal protein S11
120	 37.16	0	121918..123093	+	391	16752414	-	CP0121	-	DNA-directed RNA polymerase subunit alpha
121	 35.90	-1	123100..123528	+	142	16752415	rplQ	CP0122	-	50S ribosomal protein L17
122	 38.69	0	123570..124577	+	335	16752416	-	CP0123	-	glyceraldehyde-3-phosphate dehydrogenase
123	 40.89	0	124592..125425	+	277	16752417	-	CP0124	-	hypothetical protein
124	 38.32	0	125833..126795	+	320	16752418	-	CP0125	-	hypothetical protein
125	 42.41	0	126938..127444	+	168	16752419	ruvC	CP0126	-	Holliday junction resolvase
126	 41.35	0	127446..128069	+	207	16752420	ruvA	CP0127	-	Holliday junction DNA helicase motor protein
127	 40.69	0	128141..128575	+	144	16752421	ndk	CP0128	-	nucleoside diphosphate kinase
128	 39.97	0	128572..129279	-	235	16752422	-	CP0129	-	lipoate-protein ligase-related protein
129	 42.86	0	129266..131101	-	611	16752423	-	CP0130	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
130	 39.94	0	131445..132851	-	468	16752424	-	CP0131	-	replicative DNA helicase
131	 40.63	0	133448..133954	+	168	16752425	-	CP0132	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase protein, putative
132	 42.45	0	134183..135805	+	540	16752426	-	CP0133	-	ADP, ATP carrier protein
133	 41.62	0	135929..136930	+	333	16752427	-	CP0134	-	protease IV, putative
134	 38.08	0	136954..139566	+	870	16752428	-	CP0135	-	DNA polymerase I
135	 37.77	0	139560..140168	+	202	16752429	coaE	CP0136	-	dephospho-CoA kinase
136	 42.15	0	140165..141559	+	464	16752430	rho	CP0137	-	transcription termination factor Rho
137	 36.49	-1	141596..141880	-	94	16752431	-	CP0138	-	hypothetical protein
40.53	MEAN

3.43	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.