IslandPath Analysis: Chlamydophila pneumoniae AR39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.53   STD DEV: 3.43
Chlamydophila pneumoniae AR39, complete genome - 1..1229853
1112 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
730	 43.92	0	790172..791635	+	487	16753010	-	CP0741	-	hypothetical protein
731	 41.47	0	791717..792994	+	425	16753011	-	CP0742	-	hypothetical protein
732	 45.16	+1	793027..795063	-	678	16753012	-	CP0743	-	2-oxoisovalerate dehydrogenase, E1 component, alpha and beta subunit
733	 43.85	0	795100..796278	-	392	16753013	-	CP0744	-	dnaJ protein
734	 40.68	0	796314..796490	-	58	16753014	rpsU	CP0745	-	30S ribosomal protein S21
735	 41.43	0	796669..797310	-	213	16753015	-	CP0746	-	hypothetical protein
736	 37.40	0	797446..797814	+	122	16753016	-	CP0747	-	hypothetical protein
737	 36.39	-1	797876..798661	+	261	16753017	-	CP0748	-	hypothetical protein
738	 40.81	0	798967..801426	+	819	16753018	-	CP0749	-	Lon family protease
739	 41.98	0	801576..802442	+	288	16753019	-	CP0750	-	hypothetical protein
740	 43.18	0	802597..803520	+	307	16753020	-	CP0751	-	ribonuclease Z
741	 42.07	0	803605..804543	+	312	16753021	xerC	CP0752	-	site-specific tyrosine recombinase XerC
742	 41.12	0	804598..806190	+	530	16753022	-	CP0753	-	ABC transporter, ATP-binding protein
743	 40.27	0	806219..806809	+	196	16753023	maf	CP0754	-	Maf-like protein
744	 44.23	+1	806791..808497	+	568	16753024	-	CP0755	-	hypothetical protein
745	 43.07	0	808487..810601	+	704	16753025	-	CP0756	-	hypothetical protein
746	 40.21	0	813695..813883	-	62	16753026	-	CP0758	-	hypothetical protein
747	 43.31	0	820085..822610	-	841	16753027	-	CP0761	-	polymorphic membrane protein G family protein
748	 38.42	0	822979..824550	-	523	16753028	-	CP0762	-	hypothetical protein
749	 38.29	0	824577..825302	-	241	16753029	-	CP0763	-	hypothetical protein
750	 44.69	+1	825445..827769	-	774	16753030	-	CP0764	-	hypothetical protein
751	 41.21	0	828079..829386	-	435	16753031	-	CP0765	-	hypothetical protein
752	 44.28	+1	829513..830316	-	267	16753032	-	CP0766	-	hypothetical protein
753	 29.03	-2	830422..830514	-	30	16753033	-	CP0767	-	hypothetical protein
754	 48.06	+2	830626..830754	-	42	16753034	-	CP0768	-	hypothetical protein
755	 40.98	0	830702..833668	-	988	16753035	-	CP0769	-	hypothetical protein
756	 41.03	0	834306..837074	-	922	16753036	-	CP0770	-	polymorphic membrane protein G family protein
757	 43.01	0	837365..838831	-	488	16753037	gatB	CP0771	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
758	 44.08	+1	838828..840306	-	492	16753038	gatA	CP0772	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
759	 38.56	0	840323..840628	-	101	16753039	gatC	CP0773	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
760	 26.80	-2	840632..840784	-	50	16753040	-	CP0774	-	hypothetical protein
761	 40.07	0	840919..841200	+	93	16753041	-	CP0775	-	hypothetical protein
762	 42.30	0	841596..842420	-	274	16753042	-	CP0776	-	hypothetical protein
763	 42.76	0	842593..843462	-	289	16753043	-	CP0777	-	hypothetical protein
764	 27.50	-2	843715..843834	-	39	16753044	-	CP0778	-	hypothetical protein
765	 41.09	0	844107..845549	+	480	16753045	-	CP0779	-	hypothetical protein
766	 45.66	+1	845921..847291	+	456	16753046	-	CP0780	-	hypothetical protein
767	 38.66	0	847488..847919	-	143	16753047	-	CP0781	-	hypothetical protein
768	 39.58	0	848174..849070	+	298	161353772	-	CP0782	-	ribonuclease HIII
769	 40.11	0	849137..849697	-	186	16753049	def	CP0783	-	peptide deformylase
770	 39.78	0	849941..850297	-	118	16753050	secG	CP0784	-	preprotein translocase subunit SecG
771	 41.11	0	850534..850713	-	59	16753051	-	CP0785	-	hypothetical protein
772	 43.01	0	850717..851481	-	254	16753052	tpiA	CP0786	-	triosephosphate isomerase
773	 43.66	0	851612..853276	+	554	16753053	xseA	CP0787	-	exodeoxyribonuclease VII large subunit
774	 42.98	0	853280..853507	+	75	16753054	xseB	CP0788	-	exodeoxyribonuclease VII small subunit
775	 34.11	-1	853512..853769	+	85	16753055	-	CP0789	-	hypothetical protein
776	 43.15	0	853774..855708	+	644	16753056	-	CP0790	-	1-deoxy-D-xylulose-5-phosphate synthase
777	 41.73	0	855751..856584	-	277	16753057	ksgA	CP0791	-	dimethyladenosine transferase
778	 41.85	0	856593..857684	-	363	16753058	-	CP0792	-	hypothetical protein
779	 41.42	0	857833..859935	-	700	16753059	-	CP0793	-	hypothetical protein
780	 40.98	0	860201..860932	-	243	16753060	-	CP0794	-	hypothetical protein
781	 43.08	0	860908..861738	-	276	16753061	-	CP0795	-	hypothetical protein
782	 46.01	+1	861966..862691	-	241	16753062	-	CP0796	-	hypothetical protein
783	 43.79	0	862706..864274	-	522	16753080	-	CP0797	-	hypothetical protein
784	 29.52	-2	864591..864695	-	34	16751971	-	CP0798	-	hypothetical protein
785	 36.59	-1	864713..865264	-	183	16751972	-	CP0799	-	hypothetical protein
786	 36.24	-1	865245..866000	-	251	16751973	-	CP0800	-	hypothetical protein
787	 32.37	-2	866144..866455	-	103	16751974	-	CP0801	-	hypothetical protein
788	 42.12	0	866616..867491	-	291	16751975	dapA	CP0802	-	dihydrodipicolinate synthase
789	 40.97	0	867500..868822	-	440	16751976	-	CP0803	-	aspartate kinase
790	 42.51	0	868810..869811	-	333	16751977	-	CP0804	-	aspartate-semialdehyde dehydrogenase
791	 42.39	0	870071..870865	-	264	16751978	-	CP0805	-	dihydrodipicolinate reductase
792	 38.57	0	870742..871830	+	362	16751979	phhA	CP0806	-	phenylalanine 4-monooxygenase
793	 38.20	0	871821..872519	+	232	16751980	-	CP0807	-	hypothetical protein
794	 43.78	0	872726..873721	+	331	16751981	-	CP0808	-	biotin synthase
795	 41.95	0	873700..874848	+	382	16751982	-	CP0809	-	8-amino-7-oxononanoate synthase
796	 42.42	0	874827..875486	+	219	16751983	-	CP0810	-	dethiobiotin synthase BioD, putative
797	 44.65	+1	875423..876694	+	423	16751984	-	CP0811	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
798	 40.33	0	876676..877347	+	223	16751985	-	CP0812	-	hypothetical protein
799	 43.50	0	877418..878755	+	445	16751986	-	CP0813	-	3-phosphoshikimate 1-carboxyvinyltransferase
800	 40.87	0	878691..879221	+	176	16751987	-	CP0814	-	shikimate kinase
801	 46.39	+1	879218..880297	+	359	16751988	-	CP0815	-	chorismate synthase
802	 40.09	0	880282..881436	+	384	16751989	aroB	CP0816	-	3-dehydroquinate synthase
803	 43.58	0	881417..882850	+	477	16751990	aroDE	CP0817	-	bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein
804	 42.46	0	882900..883688	+	262	16751991	-	CP0818	-	hypothetical protein
805	 42.75	0	883917..885233	+	438	16751992	-	CP0819	-	hypothetical protein
806	 42.01	0	885267..885854	+	195	16751993	-	CP0820	-	hypothetical protein
807	 43.48	0	885865..887322	+	485	16751994	-	CP0821	-	amino acid permease
808	 45.37	+1	887531..888577	+	348	16751995	-	CP0822	-	DadA family oxidoreductase
809	 38.08	0	888570..889391	-	273	16751996	-	CP0823	-	hypothetical protein
810	 46.00	+1	889415..890401	-	328	16751997	-	CP0824	-	malate dehydrogenase
811	 43.52	0	890659..892239	-	526	16751998	-	CP0825	-	hypothetical protein
812	 45.83	+1	892274..892417	-	47	16751999	-	CP0826	-	hypothetical protein
813	 44.09	+1	892532..894112	-	526	16752000	pgi	CP0827	-	glucose-6-phosphate isomerase
814	 46.14	+1	894178..895083	+	301	16752001	xerD	CP0828	-	site-specific tyrosine recombinase XerD
815	 39.33	0	895080..895379	-	99	16752002	-	CP0829	-	hypothetical protein
816	 29.91	-2	895628..895744	+	38	16752003	-	CP0830	-	hypothetical protein
817	 41.82	0	895741..897201	+	486	16752004	-	CP0831	-	hypothetical protein
818	 36.80	-1	897201..897719	+	172	16752005	-	CP0832	-	type III secretion chaperone
819	 39.14	0	897735..899267	+	510	16752006	-	CP0833	-	hypothetical protein
820	 43.04	0	899286..900779	+	497	16752007	-	CP0834	-	hypothetical protein
821	 39.55	0	900782..901441	-	219	16752008	-	CP0835	-	hypothetical protein
822	 41.48	0	901476..902408	-	310	16752009	ispH	CP0836	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
823	 41.40	0	902513..904372	-	619	16752010	-	CP0837	-	hypothetical protein
824	 40.74	0	904518..905786	-	422	16752011	-	CP0838	-	hypothetical protein
825	 43.82	0	905988..907685	+	565	16752012	-	CP0839	-	sulfate transporter family protein
826	 40.27	0	907787..909169	-	460	16752013	fumC	CP0840	-	fumarate hydratase
827	 42.34	0	909221..910996	+	591	16752014	-	CP0841	-	ABC transporter, permease protein, putative
828	 41.05	0	911742..912350	+	202	16752015	-	CP0843	-	hypothetical protein
829	 43.26	0	912356..913231	+	291	161353775	-	CP0844	-	methionine aminopeptidase
40.53	MEAN

3.43	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.