IslandPath Analysis: Chlamydophila pneumoniae AR39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.53   STD DEV: 3.43
Chlamydophila pneumoniae AR39, complete genome - 1..1229853
1112 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
681	 38.99	0	737886..738875	-	329	16752962	-	CP0692	-	transaldolase B
682	 40.39	0	738978..743171	-	1397	16752963	-	CP0693	-	DNA-directed RNA polymerase subunit beta'
683	 40.27	0	743183..746971	-	1262	16753076	rpoB	CP0694	-	DNA-directed RNA polymerase subunit beta
684	 38.72	0	747078..747467	-	129	16752964	rplL	CP0695	-	50S ribosomal protein L7/L12
685	 40.35	0	747511..748023	-	170	16752965	rplJ	CP0696	-	50S ribosomal protein L10
686	 38.63	0	748039..748737	-	232	16752966	rplA	CP0697	-	50S ribosomal protein L1
687	 38.26	0	748764..749189	-	141	16752967	rplK	CP0698	-	50S ribosomal protein L11
688	 38.25	0	749296..749844	-	182	16752968	nusG	CP0699	-	transcription antitermination protein NusG
689	 32.54	-2	749849..750100	-	83	16752969	secE	CP0700	-	preprotein translocase subunit SecE
690	 43.12	0	750244..751428	-	394	16752970	tuf	CP0701	-	elongation factor Tu
691	 42.79	0	751625..751846	-	73	16752971	infA	CP0702	-	translation initiation factor IF-1
692	 37.40	0	752117..753148	+	343	16752972	-	CP0703	-	hypothetical protein
693	 35.93	-1	753145..753606	+	153	16752973	-	CP0704	-	hypothetical protein
694	 43.38	0	754112..755674	-	520	16752974	-	CP0705	-	hypothetical protein
695	 36.11	-1	756293..756868	+	191	16752975	-	CP0706	-	hypothetical protein
696	 39.31	0	757140..758243	-	367	16752976	-	CP0707	-	hypothetical protein
697	 42.85	0	758538..760271	-	577	16752977	-	CP0708	-	hypothetical protein
698	 41.38	0	760542..762293	-	583	16752978	-	CP0709	-	hypothetical protein
699	 46.15	+1	762617..762850	-	77	16752979	-	CP0710	-	hypothetical protein
700	 36.48	-1	762926..763084	-	52	16752980	-	CP0711	-	hypothetical protein
701	 35.04	-1	763327..763443	-	38	16752981	-	CP0712	-	hypothetical protein
702	 40.98	0	763503..764888	-	461	16752982	-	CP0713	-	hypothetical protein
703	 39.09	0	764985..765662	-	225	16752983	-	CP0714	-	PTS system, IIA component
704	 41.51	0	765665..766141	-	158	16752984	-	CP0715	-	PTS system, IIA component
705	 45.66	+1	766143..766580	-	145	16752985	dut	CP0716	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
706	 42.93	0	766631..767557	-	308	16752986	-	CP0717	-	acetyl-CoA carboxylase subunit beta
707	 39.90	0	767639..768262	-	207	16752987	-	CP0718	-	superoxide dismutase
708	 43.13	0	768447..770243	-	598	16752988	-	CP0719	-	phosphoglucomutase/phosphomannomutase, putative
709	 41.08	0	770603..771067	-	154	16752989	-	CP0720	-	hypothetical protein
710	 43.00	0	771173..771886	+	237	16752990	rnc	CP0721	-	ribonuclease III
711	 43.83	0	771852..773213	+	453	16752991	-	CP0722	-	DNA repair protein RadA
712	 45.39	+1	773191..773895	+	234	16752992	-	CP0723	-	porphobilinogen deaminase
713	 33.33	-2	773982..774137	-	51	16752993	-	CP0724	-	hypothetical protein
714	 39.75	0	774895..775377	+	160	16752994	-	CP0725	-	hypothetical protein
715	 41.88	0	775387..777504	-	705	16752995	-	CP0726	-	hypothetical protein
716	 33.99	-1	777536..777688	-	50	16752996	-	CP0727	-	hypothetical protein
717	 42.48	0	777925..780132	-	735	16752997	-	CP0728	-	hypothetical protein
718	 38.57	0	780420..780782	-	120	16752998	-	CP0729	-	hypothetical protein
719	 43.23	0	780826..782754	-	642	16752999	-	CP0730	-	hypothetical protein
720	 46.94	+1	782873..783019	-	48	16753000	-	CP0731	-	hypothetical protein
721	 40.74	0	783016..783798	-	260	16753001	-	CP0732	-	hypothetical protein
722	 43.26	0	783856..785205	-	449	16753002	-	CP0733	-	hypothetical protein
723	 29.17	-2	785447..785542	-	31	16753003	-	CP0734	-	hypothetical protein
724	 40.71	0	785558..786886	+	442	16753004	-	CP0735	-	DNA polymerase III subunits gamma and tau
725	 41.92	0	786951..787241	+	96	16753005	-	CP0736	-	hypothetical protein
726	 42.95	0	787367..789082	-	571	16753006	-	CP0737	-	phosphoenolpyruvate-protein phosphotransferase
727	 40.98	0	789083..789409	-	108	16753007	-	CP0738	-	phosphocarrier protein HPr
728	 40.33	0	789402..789887	-	161	16753008	-	CP0739	-	hypothetical protein
729	 42.28	0	789934..790257	+	107	16753009	-	CP0740	-	hypothetical protein
730	 43.92	0	790172..791635	+	487	16753010	-	CP0741	-	hypothetical protein
731	 41.47	0	791717..792994	+	425	16753011	-	CP0742	-	hypothetical protein
732	 45.16	+1	793027..795063	-	678	16753012	-	CP0743	-	2-oxoisovalerate dehydrogenase, E1 component, alpha and beta subunit
733	 43.85	0	795100..796278	-	392	16753013	-	CP0744	-	dnaJ protein
734	 40.68	0	796314..796490	-	58	16753014	rpsU	CP0745	-	30S ribosomal protein S21
735	 41.43	0	796669..797310	-	213	16753015	-	CP0746	-	hypothetical protein
736	 37.40	0	797446..797814	+	122	16753016	-	CP0747	-	hypothetical protein
737	 36.39	-1	797876..798661	+	261	16753017	-	CP0748	-	hypothetical protein
738	 40.81	0	798967..801426	+	819	16753018	-	CP0749	-	Lon family protease
739	 41.98	0	801576..802442	+	288	16753019	-	CP0750	-	hypothetical protein
740	 43.18	0	802597..803520	+	307	16753020	-	CP0751	-	ribonuclease Z
741	 42.07	0	803605..804543	+	312	16753021	xerC	CP0752	-	site-specific tyrosine recombinase XerC
742	 41.12	0	804598..806190	+	530	16753022	-	CP0753	-	ABC transporter, ATP-binding protein
743	 40.27	0	806219..806809	+	196	16753023	maf	CP0754	-	Maf-like protein
744	 44.23	+1	806791..808497	+	568	16753024	-	CP0755	-	hypothetical protein
745	 43.07	0	808487..810601	+	704	16753025	-	CP0756	-	hypothetical protein
746	 40.21	0	813695..813883	-	62	16753026	-	CP0758	-	hypothetical protein
747	 43.31	0	820085..822610	-	841	16753027	-	CP0761	-	polymorphic membrane protein G family protein
748	 38.42	0	822979..824550	-	523	16753028	-	CP0762	-	hypothetical protein
749	 38.29	0	824577..825302	-	241	16753029	-	CP0763	-	hypothetical protein
750	 44.69	+1	825445..827769	-	774	16753030	-	CP0764	-	hypothetical protein
751	 41.21	0	828079..829386	-	435	16753031	-	CP0765	-	hypothetical protein
752	 44.28	+1	829513..830316	-	267	16753032	-	CP0766	-	hypothetical protein
753	 29.03	-2	830422..830514	-	30	16753033	-	CP0767	-	hypothetical protein
754	 48.06	+2	830626..830754	-	42	16753034	-	CP0768	-	hypothetical protein
755	 40.98	0	830702..833668	-	988	16753035	-	CP0769	-	hypothetical protein
756	 41.03	0	834306..837074	-	922	16753036	-	CP0770	-	polymorphic membrane protein G family protein
757	 43.01	0	837365..838831	-	488	16753037	gatB	CP0771	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
758	 44.08	+1	838828..840306	-	492	16753038	gatA	CP0772	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
759	 38.56	0	840323..840628	-	101	16753039	gatC	CP0773	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
760	 26.80	-2	840632..840784	-	50	16753040	-	CP0774	-	hypothetical protein
761	 40.07	0	840919..841200	+	93	16753041	-	CP0775	-	hypothetical protein
762	 42.30	0	841596..842420	-	274	16753042	-	CP0776	-	hypothetical protein
763	 42.76	0	842593..843462	-	289	16753043	-	CP0777	-	hypothetical protein
764	 27.50	-2	843715..843834	-	39	16753044	-	CP0778	-	hypothetical protein
765	 41.09	0	844107..845549	+	480	16753045	-	CP0779	-	hypothetical protein
766	 45.66	+1	845921..847291	+	456	16753046	-	CP0780	-	hypothetical protein
767	 38.66	0	847488..847919	-	143	16753047	-	CP0781	-	hypothetical protein
768	 39.58	0	848174..849070	+	298	161353772	-	CP0782	-	ribonuclease HIII
769	 40.11	0	849137..849697	-	186	16753049	def	CP0783	-	peptide deformylase
770	 39.78	0	849941..850297	-	118	16753050	secG	CP0784	-	preprotein translocase subunit SecG
771	 41.11	0	850534..850713	-	59	16753051	-	CP0785	-	hypothetical protein
772	 43.01	0	850717..851481	-	254	16753052	tpiA	CP0786	-	triosephosphate isomerase
773	 43.66	0	851612..853276	+	554	16753053	xseA	CP0787	-	exodeoxyribonuclease VII large subunit
774	 42.98	0	853280..853507	+	75	16753054	xseB	CP0788	-	exodeoxyribonuclease VII small subunit
775	 34.11	-1	853512..853769	+	85	16753055	-	CP0789	-	hypothetical protein
776	 43.15	0	853774..855708	+	644	16753056	-	CP0790	-	1-deoxy-D-xylulose-5-phosphate synthase
777	 41.73	0	855751..856584	-	277	16753057	ksgA	CP0791	-	dimethyladenosine transferase
778	 41.85	0	856593..857684	-	363	16753058	-	CP0792	-	hypothetical protein
779	 41.42	0	857833..859935	-	700	16753059	-	CP0793	-	hypothetical protein
780	 40.98	0	860201..860932	-	243	16753060	-	CP0794	-	hypothetical protein
40.53	MEAN

3.43	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.