IslandPath Analysis: Chlamydophila pneumoniae AR39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.53   STD DEV: 3.43
Chlamydophila pneumoniae AR39, complete genome - 1..1229853
1112 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
608	 39.84	0	645808..645930	+	40	16752891	-	CP0619	-	hypothetical protein
609	 42.06	0	645936..646886	+	316	16752892	-	CP0620	-	hypothetical protein
610	 35.83	-1	646955..647074	+	39	16752893	-	CP0621	-	hypothetical protein
611	 39.20	0	647113..648579	+	488	16753082	-	CP0622	-	hypothetical protein
612	 40.75	0	648754..653367	-	1537	16752894	-	CP0623	-	hypothetical protein
613	 41.43	0	653498..655486	-	662	16752895	ligA	CP0624	-	NAD-dependent DNA ligase LigA
614	 40.70	0	655496..657355	-	619	16752896	-	CP0625	-	hypothetical protein
615	 46.22	+1	657527..657976	-	149	16752897	-	CP0626	-	hypothetical protein
616	 44.44	+1	658103..658588	-	161	16752898	-	CP0627	-	hypothetical protein
617	 39.71	0	658829..660397	-	522	16752899	-	CP0628	-	hypothetical protein
618	 40.40	0	660638..663256	-	872	16752900	-	CP0629	-	ATP-dependent Clp protease, subunit B
619	 39.47	0	663866..664990	+	374	16752901	-	CP0630	-	hypothetical protein
620	 40.80	0	665399..666094	+	231	16752902	-	CP0631	-	ribose-5-phosphate isomerase A
621	 38.32	0	666091..666531	+	146	16752903	-	CP0632	-	hypothetical protein
622	 40.74	0	666545..667111	+	188	16752904	-	CP0633	-	hypothetical protein
623	 43.31	0	667182..668504	+	440	16752905	-	CP0634	-	glutamate-1-semialdehyde aminotransferase
624	 44.05	+1	668947..669702	+	251	16752906	-	CP0635	-	hypothetical protein
625	 40.41	0	669800..671635	+	611	16752907	-	CP0636	-	oligoendopeptidase F
626	 42.07	0	671753..672061	+	102	16752908	groES	CP0637	-	co-chaperonin GroES
627	 41.35	0	672103..673737	+	544	16752909	groEL	CP0638	-	chaperonin GroEL
628	 43.15	0	673867..674640	+	257	16752910	-	CP0639	-	hypothetical protein
629	 38.45	0	674637..675614	-	325	16752911	-	CP0640	-	hypothetical protein
630	 37.94	0	675618..676658	-	346	16752912	-	CP0641	-	hypothetical protein
631	 37.38	0	676956..678140	+	394	16752913	-	CP0642	-	hypothetical protein
632	 45.51	+1	678145..678924	-	259	16752914	-	CP0643	-	biotin apo-protein ligase-related protein
633	 31.71	-2	678918..679040	-	40	16752915	-	CP0644	-	hypothetical protein
634	 44.15	+1	679058..680074	+	338	16752916	-	CP0645	-	hypothetical protein
635	 39.78	0	680113..682392	-	759	16752917	-	CP0646	-	hypothetical protein
636	 35.09	-1	682337..682507	-	56	16752918	-	CP0647	-	hypothetical protein
637	 39.38	0	682593..683105	-	170	16752919	-	CP0648	-	hypothetical protein
638	 39.37	0	683130..684587	-	485	16752920	-	CP0649	-	hypothetical protein
639	 39.65	0	685232..687430	+	732	16752921	-	CP0650	-	exodeoxyribonuclease V, alpha subunit
640	 39.86	0	687475..689130	-	551	16752922	-	CP0651	-	methionyl-tRNA synthetase
641	 36.73	-1	689130..689423	-	97	16752923	-	CP0652	-	hypothetical protein
642	 40.78	0	689420..690037	-	205	16752924	gmk	CP0653	-	guanylate kinase
643	 40.31	0	690034..690678	-	214	16752925	rnhB	CP0654	-	ribonuclease HII
644	 41.26	0	690734..691099	-	121	16752926	rplS	CP0655	-	50S ribosomal protein L19
645	 41.25	0	691127..692212	-	361	16752927	trmD	CP0656	-	fused tRNA (guanine-N(1)-)-methyltransferase/uncharacterized domain-containing protein
646	 41.11	0	692226..692585	-	119	16752928	rpsP	CP0657	-	30S ribosomal protein S16
647	 38.75	0	692576..693922	-	448	16752929	-	CP0658	-	signal recognition particle protein FFH
648	 41.64	0	693937..694803	-	288	16752930	-	CP0659	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
649	 40.69	0	694793..695866	-	357	16752931	prfA	CP0660	-	peptide chain release factor 1
650	 35.15	-1	696105..696434	-	109	16752932	rpmE2	CP0661	-	50S ribosomal protein L31 type B
651	 41.67	0	696515..697270	+	251	16752933	-	CP0662	-	hypothetical protein
652	 34.21	-1	697357..697470	+	37	16752934	-	CP0663	-	hypothetical protein
653	 40.55	0	697467..699377	+	636	16752935	-	CP0664	-	signal peptidase I, putative
654	 39.27	0	699415..702546	-	1043	16752936	ileS	CP0665	-	isoleucyl-tRNA synthetase
655	 39.78	0	703344..703901	+	185	16752937	-	CP0666	-	hypothetical protein
656	 44.32	+1	704039..704812	+	257	16752938	-	CP0667	-	hypothetical protein
657	 40.47	0	704824..706098	-	424	16752939	-	CP0668	-	phoH family protein
658	 39.54	0	706354..707175	+	273	16752940	-	CP0669	-	hypothetical protein
659	 40.65	0	707326..708528	+	400	16752941	-	CP0670	-	hypothetical protein
660	 39.61	0	708687..709721	-	344	16752942	-	CP0671	-	cytochrome D ubiquinol oxidase, subunit II
661	 38.08	0	709732..711078	-	448	16753075	-	CP0672	-	cytochrome D ubiquinol oxidase, subunit I
662	 41.26	0	711269..712063	+	264	16752943	-	CP0673	-	hypothetical protein
663	 36.38	-1	712045..713322	+	425	16752944	-	CP0674	-	hypothetical protein
664	 41.67	0	713358..713657	+	99	16752945	-	CP0675	-	hypothetical protein
665	 38.88	0	713710..715098	+	462	16752946	-	CP0676	-	lipid A biosynthesis lauroyl acyltransferase
666	 42.61	0	715192..716646	-	484	16752947	-	CP0677	-	pyruvate kinase
667	 42.22	0	716887..722367	+	1826	16752948	-	CP0678	-	excinuclease ABC subunit A
668	 40.62	0	722408..725206	-	932	16752949	pknD	CP0679	-	serine/threonine-protein kinase
669	 42.47	0	725227..728049	-	940	16752950	valS	CP0680	-	valyl-tRNA synthetase
670	 43.49	0	728183..728704	-	173	16752951	-	CP0681	-	hypothetical protein
671	 43.66	0	728625..729050	-	141	16752952	-	CP0682	-	V-type ATP synthase subunit K
672	 39.69	0	729145..731127	-	660	16752953	-	CP0683	-	V-type ATP synthase subunit I
673	 39.68	0	731118..731747	-	209	16752954	-	CP0684	-	V-type ATP synthase subunit D
674	 40.09	0	731732..733048	-	438	16752955	-	CP0685	-	V-type ATP synthase subunit B
675	 42.00	0	733053..734828	-	591	16752956	-	CP0686	-	V-type ATP synthase subunit A
676	 36.83	-1	734822..735622	-	266	16752957	-	CP0687	-	hypothetical protein
677	 40.83	0	735671..736297	-	208	16752958	-	CP0688	-	V-type ATP synthase subunit E
678	 31.85	-2	736476..736610	+	44	16752959	-	CP0689	-	hypothetical protein
679	 38.98	0	736695..737438	+	247	16752960	-	CP0690	-	hypothetical protein
680	 33.33	-2	737447..737839	-	130	16752961	-	CP0691	-	hypothetical protein
681	 38.99	0	737886..738875	-	329	16752962	-	CP0692	-	transaldolase B
682	 40.39	0	738978..743171	-	1397	16752963	-	CP0693	-	DNA-directed RNA polymerase subunit beta'
683	 40.27	0	743183..746971	-	1262	16753076	rpoB	CP0694	-	DNA-directed RNA polymerase subunit beta
684	 38.72	0	747078..747467	-	129	16752964	rplL	CP0695	-	50S ribosomal protein L7/L12
685	 40.35	0	747511..748023	-	170	16752965	rplJ	CP0696	-	50S ribosomal protein L10
686	 38.63	0	748039..748737	-	232	16752966	rplA	CP0697	-	50S ribosomal protein L1
687	 38.26	0	748764..749189	-	141	16752967	rplK	CP0698	-	50S ribosomal protein L11
688	 38.25	0	749296..749844	-	182	16752968	nusG	CP0699	-	transcription antitermination protein NusG
689	 32.54	-2	749849..750100	-	83	16752969	secE	CP0700	-	preprotein translocase subunit SecE
690	 43.12	0	750244..751428	-	394	16752970	tuf	CP0701	-	elongation factor Tu
691	 42.79	0	751625..751846	-	73	16752971	infA	CP0702	-	translation initiation factor IF-1
692	 37.40	0	752117..753148	+	343	16752972	-	CP0703	-	hypothetical protein
693	 35.93	-1	753145..753606	+	153	16752973	-	CP0704	-	hypothetical protein
694	 43.38	0	754112..755674	-	520	16752974	-	CP0705	-	hypothetical protein
695	 36.11	-1	756293..756868	+	191	16752975	-	CP0706	-	hypothetical protein
696	 39.31	0	757140..758243	-	367	16752976	-	CP0707	-	hypothetical protein
697	 42.85	0	758538..760271	-	577	16752977	-	CP0708	-	hypothetical protein
698	 41.38	0	760542..762293	-	583	16752978	-	CP0709	-	hypothetical protein
699	 46.15	+1	762617..762850	-	77	16752979	-	CP0710	-	hypothetical protein
700	 36.48	-1	762926..763084	-	52	16752980	-	CP0711	-	hypothetical protein
701	 35.04	-1	763327..763443	-	38	16752981	-	CP0712	-	hypothetical protein
702	 40.98	0	763503..764888	-	461	16752982	-	CP0713	-	hypothetical protein
703	 39.09	0	764985..765662	-	225	16752983	-	CP0714	-	PTS system, IIA component
704	 41.51	0	765665..766141	-	158	16752984	-	CP0715	-	PTS system, IIA component
705	 45.66	+1	766143..766580	-	145	16752985	dut	CP0716	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
706	 42.93	0	766631..767557	-	308	16752986	-	CP0717	-	acetyl-CoA carboxylase subunit beta
707	 39.90	0	767639..768262	-	207	16752987	-	CP0718	-	superoxide dismutase
40.53	MEAN

3.43	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.