IslandPath Analysis: Chlamydophila pneumoniae AR39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.53   STD DEV: 3.43
Chlamydophila pneumoniae AR39, complete genome - 1..1229853
1112 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
560	 41.44	0	602404..603711	-	435	16752843	-	CP0570	-	peptide ABC transporter, periplasmic peptide-binding protein, putative
561	 40.03	0	603767..605350	-	527	16752844	-	CP0571	-	peptide ABC transporter, periplasmic peptide-binding protein, putative
562	 40.71	0	605501..607099	-	532	16752845	-	CP0572	-	peptide ABC transporter, periplasmic peptide-binding protein, putative
563	 41.55	0	607045..608079	-	344	16752846	-	CP0573	-	O-sialoglycoprotein endopeptidase
564	 42.34	0	608163..608606	+	147	16752847	-	CP0574	-	arginine repressor
565	 35.63	-1	608655..609308	+	217	16752848	-	CP0575	-	amino acid ABC transporter, permease protein
566	 41.70	0	609298..609978	+	226	16752849	-	CP0576	-	amino acid ABC transporter, ATP-binding protein
567	 40.40	0	610012..611370	-	452	16752850	-	CP0577	-	hypothetical protein
568	 39.90	0	611461..614889	-	1142	16752851	-	CP0578	-	hypothetical protein
569	 38.05	0	614886..616178	-	430	16752852	-	CP0579	-	hypothetical protein
570	 39.20	0	616241..617041	-	266	16752853	-	CP0580	-	hypothetical protein
571	 40.92	0	617218..618390	-	390	16752854	-	CP0581	-	hypothetical protein
572	 27.78	-2	618445..618552	-	35	16752855	-	CP0582	-	hypothetical protein
573	 38.41	0	618838..619527	+	229	16752856	-	CP0583	-	ribulose-phosphate 3-epimerase
574	 37.28	0	619514..620071	+	185	16752857	-	CP0584	-	elongation factor P
575	 39.09	0	620094..620597	+	167	16752858	-	CP0585	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
576	 39.49	0	620594..621958	+	454	16752859	-	CP0586	-	acetyl-CoA carboxylase biotin carboxylase subunit
577	 36.32	-1	622114..622515	+	133	16752860	-	CP0587	-	hypothetical protein
578	 38.38	0	622383..622937	+	184	16752861	-	CP0588	-	hypothetical protein
579	 38.75	0	622886..623236	+	116	16752862	-	CP0589	-	hypothetical protein
580	 40.45	0	623237..623503	+	88	16752863	-	CP0590	-	hypothetical protein
581	 44.09	+1	623683..623775	+	30	16752864	-	CP0591	-	hypothetical protein
582	 40.47	0	623830..624684	+	284	16752865	-	CP0592	-	hypothetical protein
583	 37.94	0	624768..626003	-	411	16752866	-	CP0593	-	hypothetical protein
584	 39.90	0	626011..626391	-	126	16752867	-	CP0594	-	hypothetical protein
585	 39.80	0	626562..627056	-	164	16752868	-	CP0595	-	hypothetical protein
586	 32.56	-2	627010..627138	-	42	16752869	-	CP0596	-	hypothetical protein
587	 37.68	0	627302..627577	+	91	16752870	-	CP0597	-	hypothetical protein
588	 41.16	0	628854..630143	+	429	16752871	-	CP0599	-	GMP synthase
589	 38.91	0	630263..631267	+	334	16752872	-	CP0600	-	hypothetical protein
590	 40.62	0	631378..631473	+	31	16752873	-	CP0601	-	hypothetical protein
591	 37.48	0	631788..632582	+	264	16752874	-	CP0602	-	hypothetical protein
592	 39.91	0	632648..632875	+	75	16752875	-	CP0603	-	hypothetical protein
593	 39.04	0	632983..633315	+	110	16752876	-	CP0604	-	hypothetical protein
594	 33.33	-2	633324..633659	-	111	16752877	-	CP0605	-	hypothetical protein
595	 36.90	-1	633704..634291	-	195	16752878	-	CP0606	-	hypothetical protein
596	 32.26	-2	634288..634845	-	185	16752879	-	CP0607	-	hypothetical protein
597	 42.47	0	634892..635263	-	123	16752880	-	CP0608	-	hypothetical protein
598	 37.03	-1	635461..636489	+	342	16752881	-	CP0609	-	hypothetical protein
599	 40.22	0	636667..637494	+	275	16752882	-	CP0610	-	dienelactone hydrolase family protein
600	 39.51	0	637498..639132	+	544	16752883	-	CP0611	-	diphosphate--fructose-6-phosphate 1-phosphotransferase
601	 40.45	0	639428..639736	+	102	16752884	-	CP0612	-	hypothetical protein
602	 37.41	0	639770..640309	+	179	16752885	-	CP0613	-	KDO-transferase 2, putative
603	 38.69	0	640477..640905	+	142	16752886	-	CP0614	-	hypothetical protein
604	 37.20	0	640892..641434	+	180	16752887	-	CP0615	-	KDO-transferase 2
605	 30.92	-2	641510..641716	+	68	16752888	-	CP0616	-	hypothetical protein
606	 39.73	0	641996..643309	-	437	16752889	-	CP0617	-	3-deoxy-D-manno-octulosonic-acid transferase
607	 42.63	0	643306..645768	-	820	16752890	leuS	CP0618	-	leucyl-tRNA synthetase
608	 39.84	0	645808..645930	+	40	16752891	-	CP0619	-	hypothetical protein
609	 42.06	0	645936..646886	+	316	16752892	-	CP0620	-	hypothetical protein
610	 35.83	-1	646955..647074	+	39	16752893	-	CP0621	-	hypothetical protein
611	 39.20	0	647113..648579	+	488	16753082	-	CP0622	-	hypothetical protein
612	 40.75	0	648754..653367	-	1537	16752894	-	CP0623	-	hypothetical protein
613	 41.43	0	653498..655486	-	662	16752895	ligA	CP0624	-	NAD-dependent DNA ligase LigA
614	 40.70	0	655496..657355	-	619	16752896	-	CP0625	-	hypothetical protein
615	 46.22	+1	657527..657976	-	149	16752897	-	CP0626	-	hypothetical protein
616	 44.44	+1	658103..658588	-	161	16752898	-	CP0627	-	hypothetical protein
617	 39.71	0	658829..660397	-	522	16752899	-	CP0628	-	hypothetical protein
618	 40.40	0	660638..663256	-	872	16752900	-	CP0629	-	ATP-dependent Clp protease, subunit B
619	 39.47	0	663866..664990	+	374	16752901	-	CP0630	-	hypothetical protein
620	 40.80	0	665399..666094	+	231	16752902	-	CP0631	-	ribose-5-phosphate isomerase A
621	 38.32	0	666091..666531	+	146	16752903	-	CP0632	-	hypothetical protein
622	 40.74	0	666545..667111	+	188	16752904	-	CP0633	-	hypothetical protein
623	 43.31	0	667182..668504	+	440	16752905	-	CP0634	-	glutamate-1-semialdehyde aminotransferase
624	 44.05	+1	668947..669702	+	251	16752906	-	CP0635	-	hypothetical protein
625	 40.41	0	669800..671635	+	611	16752907	-	CP0636	-	oligoendopeptidase F
626	 42.07	0	671753..672061	+	102	16752908	groES	CP0637	-	co-chaperonin GroES
627	 41.35	0	672103..673737	+	544	16752909	groEL	CP0638	-	chaperonin GroEL
628	 43.15	0	673867..674640	+	257	16752910	-	CP0639	-	hypothetical protein
629	 38.45	0	674637..675614	-	325	16752911	-	CP0640	-	hypothetical protein
630	 37.94	0	675618..676658	-	346	16752912	-	CP0641	-	hypothetical protein
631	 37.38	0	676956..678140	+	394	16752913	-	CP0642	-	hypothetical protein
632	 45.51	+1	678145..678924	-	259	16752914	-	CP0643	-	biotin apo-protein ligase-related protein
633	 31.71	-2	678918..679040	-	40	16752915	-	CP0644	-	hypothetical protein
634	 44.15	+1	679058..680074	+	338	16752916	-	CP0645	-	hypothetical protein
635	 39.78	0	680113..682392	-	759	16752917	-	CP0646	-	hypothetical protein
636	 35.09	-1	682337..682507	-	56	16752918	-	CP0647	-	hypothetical protein
637	 39.38	0	682593..683105	-	170	16752919	-	CP0648	-	hypothetical protein
638	 39.37	0	683130..684587	-	485	16752920	-	CP0649	-	hypothetical protein
639	 39.65	0	685232..687430	+	732	16752921	-	CP0650	-	exodeoxyribonuclease V, alpha subunit
640	 39.86	0	687475..689130	-	551	16752922	-	CP0651	-	methionyl-tRNA synthetase
641	 36.73	-1	689130..689423	-	97	16752923	-	CP0652	-	hypothetical protein
642	 40.78	0	689420..690037	-	205	16752924	gmk	CP0653	-	guanylate kinase
643	 40.31	0	690034..690678	-	214	16752925	rnhB	CP0654	-	ribonuclease HII
644	 41.26	0	690734..691099	-	121	16752926	rplS	CP0655	-	50S ribosomal protein L19
645	 41.25	0	691127..692212	-	361	16752927	trmD	CP0656	-	fused tRNA (guanine-N(1)-)-methyltransferase/uncharacterized domain-containing protein
646	 41.11	0	692226..692585	-	119	16752928	rpsP	CP0657	-	30S ribosomal protein S16
647	 38.75	0	692576..693922	-	448	16752929	-	CP0658	-	signal recognition particle protein FFH
648	 41.64	0	693937..694803	-	288	16752930	-	CP0659	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
649	 40.69	0	694793..695866	-	357	16752931	prfA	CP0660	-	peptide chain release factor 1
650	 35.15	-1	696105..696434	-	109	16752932	rpmE2	CP0661	-	50S ribosomal protein L31 type B
651	 41.67	0	696515..697270	+	251	16752933	-	CP0662	-	hypothetical protein
652	 34.21	-1	697357..697470	+	37	16752934	-	CP0663	-	hypothetical protein
653	 40.55	0	697467..699377	+	636	16752935	-	CP0664	-	signal peptidase I, putative
654	 39.27	0	699415..702546	-	1043	16752936	ileS	CP0665	-	isoleucyl-tRNA synthetase
655	 39.78	0	703344..703901	+	185	16752937	-	CP0666	-	hypothetical protein
656	 44.32	+1	704039..704812	+	257	16752938	-	CP0667	-	hypothetical protein
657	 40.47	0	704824..706098	-	424	16752939	-	CP0668	-	phoH family protein
658	 39.54	0	706354..707175	+	273	16752940	-	CP0669	-	hypothetical protein
659	 40.65	0	707326..708528	+	400	16752941	-	CP0670	-	hypothetical protein
40.53	MEAN

3.43	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.