IslandPath Analysis: Chlamydophila pneumoniae AR39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.53   STD DEV: 3.43
Chlamydophila pneumoniae AR39, complete genome - 1..1229853
1112 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
516	 40.00	0	567066..567530	-	154	16752801	-	CP0525	-	Holliday junction resolvase-like protein
517	 41.70	0	567514..569127	-	537	16752802	-	CP0526	-	CTP synthetase
518	 40.26	0	569103..569867	-	254	16752803	-	CP0527	-	3-deoxy-manno-octulosonate cytidylyltransferase
519	 21.95	-2	569893..570015	+	40	16752804	-	CP0528	-	hypothetical protein
520	 39.51	0	570043..570738	+	231	16753081	-	CP0529	-	hypothetical protein
521	 34.17	-1	570773..570892	+	39	16752805	-	CP0530	-	hypothetical protein
522	 35.56	-1	570859..571038	+	59	16752806	-	CP0531	-	hypothetical protein
523	 38.37	0	571161..572054	+	297	16752807	-	CP0532	-	hypothetical protein
524	 40.96	0	572326..573033	+	235	16752808	-	CP0533	-	ABC transporter, ATP-binding protein
525	 37.64	0	573177..573710	+	177	16752809	-	CP0534	-	hypothetical protein
526	 41.91	0	573720..574955	-	411	16752810	-	CP0535	-	hypothetical protein
527	 39.17	0	575173..575874	+	233	16752811	-	CP0536	-	hypothetical protein
528	 38.44	0	575867..576277	+	136	16752812	-	CP0537	-	putative disulfide oxidoreductase
529	 40.25	0	576313..576717	-	134	16752813	-	CP0538	-	hypothetical protein
530	 41.96	0	576739..577410	-	223	16752814	-	CP0539	-	hypothetical protein
531	 40.35	0	577457..577627	-	56	16752815	-	CP0540	-	hypothetical protein
532	 38.68	0	577606..577848	-	80	16752816	-	CP0541	-	hypothetical protein
533	 37.53	0	577947..578327	-	126	16752817	-	CP0542	-	hypothetical protein
534	 34.50	-1	578438..578779	-	113	16752818	-	CP0543	-	hypothetical protein
535	 37.23	0	579216..579626	-	136	16752819	-	CP0544	-	hypothetical protein
536	 41.76	0	580042..580587	-	181	16752820	-	CP0545	-	hypothetical protein
537	 44.15	+1	580808..581926	-	372	16752821	-	CP0546	-	queuine tRNA-ribosyltransferase
538	 34.21	-1	582135..582704	+	189	16752822	-	CP0547	-	hypothetical protein
539	 38.27	0	582701..583369	-	222	16752823	-	CP0548	-	hypothetical protein
540	 38.36	0	583674..584111	+	145	16752824	-	CP0549	-	hypothetical protein
541	 39.13	0	584267..585526	+	419	16752825	-	CP0550	-	hypothetical protein
542	 36.05	-1	585625..586839	+	404	16752826	-	CP0551	-	hypothetical protein
543	 35.61	-1	586940..587071	+	43	16752827	-	CP0552	-	hypothetical protein
544	 39.00	0	587223..588404	+	393	16752828	-	CP0553	-	hypothetical protein
545	 38.05	0	588533..588829	+	98	16752829	-	CP0554	-	hypothetical protein
546	 38.82	0	588905..589852	+	315	16752830	-	CP0555	-	hypothetical protein
547	 41.06	0	590014..590259	-	81	16752831	-	CP0557	-	hypothetical protein
548	 34.13	-1	590350..590475	-	41	16752832	-	CP0558	-	hypothetical protein
549	 42.04	0	590684..592336	-	550	16752833	-	CP0559	-	diphosphate--fructose-6-phosphate 1-phosphotransferase
550	 45.51	+1	592669..594081	-	470	16752834	-	CP0560	-	sodium:sulfate symporter family protein
551	 42.33	0	594125..594880	-	251	16752835	-	CP0561	-	hypothetical protein
552	 31.31	-2	594959..595156	-	65	16752836	-	CP0562	-	hypothetical protein
553	 36.51	-1	595284..595472	-	62	16752837	-	CP0563	-	hypothetical protein
554	 36.59	-1	595484..596281	-	265	16753074	-	CP0564	-	hypothetical protein
555	 41.06	0	596786..597574	-	262	16752838	-	CP0565	-	peptide ABC transporter, ATP-binding protein
556	 40.12	0	597571..598425	-	284	16752839	-	CP0566	-	peptide ABC transporter, ATP-binding protein
557	 42.69	0	598418..599272	-	284	16752840	-	CP0567	-	peptide ABC transporter, permease protein
558	 39.15	0	599303..600247	-	314	16752841	-	CP0568	-	peptide ABC transporter, permease protein
559	 40.01	0	600540..602126	-	528	16752842	-	CP0569	-	peptide ABC transporter, periplasmic peptide-binding protein
560	 41.44	0	602404..603711	-	435	16752843	-	CP0570	-	peptide ABC transporter, periplasmic peptide-binding protein, putative
561	 40.03	0	603767..605350	-	527	16752844	-	CP0571	-	peptide ABC transporter, periplasmic peptide-binding protein, putative
562	 40.71	0	605501..607099	-	532	16752845	-	CP0572	-	peptide ABC transporter, periplasmic peptide-binding protein, putative
563	 41.55	0	607045..608079	-	344	16752846	-	CP0573	-	O-sialoglycoprotein endopeptidase
564	 42.34	0	608163..608606	+	147	16752847	-	CP0574	-	arginine repressor
565	 35.63	-1	608655..609308	+	217	16752848	-	CP0575	-	amino acid ABC transporter, permease protein
566	 41.70	0	609298..609978	+	226	16752849	-	CP0576	-	amino acid ABC transporter, ATP-binding protein
567	 40.40	0	610012..611370	-	452	16752850	-	CP0577	-	hypothetical protein
568	 39.90	0	611461..614889	-	1142	16752851	-	CP0578	-	hypothetical protein
569	 38.05	0	614886..616178	-	430	16752852	-	CP0579	-	hypothetical protein
570	 39.20	0	616241..617041	-	266	16752853	-	CP0580	-	hypothetical protein
571	 40.92	0	617218..618390	-	390	16752854	-	CP0581	-	hypothetical protein
572	 27.78	-2	618445..618552	-	35	16752855	-	CP0582	-	hypothetical protein
573	 38.41	0	618838..619527	+	229	16752856	-	CP0583	-	ribulose-phosphate 3-epimerase
574	 37.28	0	619514..620071	+	185	16752857	-	CP0584	-	elongation factor P
575	 39.09	0	620094..620597	+	167	16752858	-	CP0585	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
576	 39.49	0	620594..621958	+	454	16752859	-	CP0586	-	acetyl-CoA carboxylase biotin carboxylase subunit
577	 36.32	-1	622114..622515	+	133	16752860	-	CP0587	-	hypothetical protein
578	 38.38	0	622383..622937	+	184	16752861	-	CP0588	-	hypothetical protein
579	 38.75	0	622886..623236	+	116	16752862	-	CP0589	-	hypothetical protein
580	 40.45	0	623237..623503	+	88	16752863	-	CP0590	-	hypothetical protein
581	 44.09	+1	623683..623775	+	30	16752864	-	CP0591	-	hypothetical protein
582	 40.47	0	623830..624684	+	284	16752865	-	CP0592	-	hypothetical protein
583	 37.94	0	624768..626003	-	411	16752866	-	CP0593	-	hypothetical protein
584	 39.90	0	626011..626391	-	126	16752867	-	CP0594	-	hypothetical protein
585	 39.80	0	626562..627056	-	164	16752868	-	CP0595	-	hypothetical protein
586	 32.56	-2	627010..627138	-	42	16752869	-	CP0596	-	hypothetical protein
587	 37.68	0	627302..627577	+	91	16752870	-	CP0597	-	hypothetical protein
588	 41.16	0	628854..630143	+	429	16752871	-	CP0599	-	GMP synthase
589	 38.91	0	630263..631267	+	334	16752872	-	CP0600	-	hypothetical protein
590	 40.62	0	631378..631473	+	31	16752873	-	CP0601	-	hypothetical protein
591	 37.48	0	631788..632582	+	264	16752874	-	CP0602	-	hypothetical protein
592	 39.91	0	632648..632875	+	75	16752875	-	CP0603	-	hypothetical protein
593	 39.04	0	632983..633315	+	110	16752876	-	CP0604	-	hypothetical protein
594	 33.33	-2	633324..633659	-	111	16752877	-	CP0605	-	hypothetical protein
595	 36.90	-1	633704..634291	-	195	16752878	-	CP0606	-	hypothetical protein
596	 32.26	-2	634288..634845	-	185	16752879	-	CP0607	-	hypothetical protein
597	 42.47	0	634892..635263	-	123	16752880	-	CP0608	-	hypothetical protein
598	 37.03	-1	635461..636489	+	342	16752881	-	CP0609	-	hypothetical protein
599	 40.22	0	636667..637494	+	275	16752882	-	CP0610	-	dienelactone hydrolase family protein
600	 39.51	0	637498..639132	+	544	16752883	-	CP0611	-	diphosphate--fructose-6-phosphate 1-phosphotransferase
601	 40.45	0	639428..639736	+	102	16752884	-	CP0612	-	hypothetical protein
602	 37.41	0	639770..640309	+	179	16752885	-	CP0613	-	KDO-transferase 2, putative
603	 38.69	0	640477..640905	+	142	16752886	-	CP0614	-	hypothetical protein
604	 37.20	0	640892..641434	+	180	16752887	-	CP0615	-	KDO-transferase 2
605	 30.92	-2	641510..641716	+	68	16752888	-	CP0616	-	hypothetical protein
606	 39.73	0	641996..643309	-	437	16752889	-	CP0617	-	3-deoxy-D-manno-octulosonic-acid transferase
607	 42.63	0	643306..645768	-	820	16752890	leuS	CP0618	-	leucyl-tRNA synthetase
608	 39.84	0	645808..645930	+	40	16752891	-	CP0619	-	hypothetical protein
609	 42.06	0	645936..646886	+	316	16752892	-	CP0620	-	hypothetical protein
610	 35.83	-1	646955..647074	+	39	16752893	-	CP0621	-	hypothetical protein
611	 39.20	0	647113..648579	+	488	16753082	-	CP0622	-	hypothetical protein
612	 40.75	0	648754..653367	-	1537	16752894	-	CP0623	-	hypothetical protein
613	 41.43	0	653498..655486	-	662	16752895	ligA	CP0624	-	NAD-dependent DNA ligase LigA
614	 40.70	0	655496..657355	-	619	16752896	-	CP0625	-	hypothetical protein
615	 46.22	+1	657527..657976	-	149	16752897	-	CP0626	-	hypothetical protein
40.53	MEAN

3.43	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.