IslandPath Analysis: Chlamydophila pneumoniae AR39



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.53   STD DEV: 3.43
Chlamydophila pneumoniae AR39, complete genome - 1..1229853
1112 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
436	 37.16	0	481159..482463	-	434	16752722	nusA	CP0441	-	transcription elongation factor NusA
437	 36.95	-1	482564..484306	-	580	16752723	rpsA	CP0442	-	30S ribosomal protein S1
438	 29.86	-2	484750..484893	-	47	16752724	-	CP0443	-	hypothetical protein
439	 41.56	0	484998..485933	+	311	16752725	-	CP0444	-	thioredoxin reductase
440	 42.28	0	485925..486293	-	122	16752726	acpS	CP0445	-	4'-phosphopantetheinyl transferase
441	 37.94	0	486304..486759	-	151	16752727	-	CP0446	-	hypothetical protein
442	 38.57	0	486833..487711	+	292	16752728	-	CP0447	-	prolipoprotein diacylglyceryl transferase
443	 37.31	0	487850..490237	+	795	16752729	-	CP0448	-	putative inner membrane protein translocase component YidC
444	 37.31	0	490309..491691	+	460	16752730	dnaA	CP0449	-	chromosomal replication initiation protein
445	 41.80	0	491684..492049	-	121	16752731	-	CP0450	-	hypothetical protein
446	 38.87	0	492297..494771	+	824	16752732	-	CP0451	-	glycogen phosphorylase
447	 42.48	0	494849..496138	-	429	16752733	-	CP0452	-	branched-chain alpha-keto acid dehydrogenase subunit E2
448	 39.92	0	496143..497129	-	328	16752734	-	CP0453	-	pyruvate dehydrogenase, E1 component, beta subunit
449	 42.37	0	497122..498150	-	342	16752735	-	CP0454	-	pyruvate dehydrogenase, E1 component, alpha subunit
450	 34.68	-1	498325..499365	+	346	16752736	-	CP0455	-	hypothetical protein
451	 40.54	0	499414..500496	-	360	16752737	lpxD	CP0456	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
452	 33.91	-1	500518..501033	-	171	16752738	-	CP0457	-	cationic outer membrane protein OmpH, putative
453	 38.17	0	501128..503506	-	792	16752739	-	CP0458	-	outer membrane protein, putative
454	 36.32	-1	503865..504467	-	200	16752740	recR	CP0459	-	recombination protein RecR
455	 42.16	0	504562..505569	+	335	16752741	-	CP0460	-	3-oxoacyl-(acyl carrier protein) synthase III
456	 39.59	0	505586..506512	+	308	16752742	-	CP0461	-	acyl-carrier-protein S-malonyltransferase
457	 42.30	0	506518..507264	+	248	16752743	fabG	CP0462	-	3-ketoacyl-(acyl-carrier-protein) reductase
458	 31.25	-2	507420..507659	+	79	16752744	acpP	CP0463	-	acyl carrier protein
459	 34.78	-1	507778..508191	-	137	16752745	-	CP0464	-	cyclic nucleotide-binding protein
460	 38.84	0	508557..511334	-	925	16753073	-	CP0465	-	hypothetical protein
461	 44.61	+1	511444..512055	-	203	16752746	-	CP0466	-	hypothetical protein
462	 41.43	0	512086..512616	-	176	16752747	-	CP0467	-	inclusion membrane protein B
463	 40.40	0	512757..514241	-	494	16752748	-	CP0468	-	sodium-dependent transporter, putative
464	 38.30	0	514284..515471	-	395	16752749	-	CP0469	-	sodium:dicarboxylate symporter family protein
465	 41.08	0	515567..516715	+	382	16752750	-	CP0470	-	hypothetical protein
466	 38.81	0	517062..519197	+	711	16752751	-	CP0471	-	hypothetical protein
467	 41.54	0	519224..520636	+	470	16752752	-	CP0472	-	magnesium transporter
468	 39.15	0	520688..522235	+	515	16752753	-	CP0473	-	hypothetical protein
469	 39.16	0	522238..522735	+	165	16752754	-	CP0474	-	hypothetical protein
470	 39.30	0	523751..525157	-	468	16752755	-	CP0476	-	amino acid antiporter
471	 39.90	0	525177..526226	-	349	16752756	-	CP0477	-	fructose-bisphosphate aldolase
472	 36.06	-1	526711..527736	+	341	16752757	-	CP0478	-	ABC transporter, ATP-binding protein
473	 39.64	0	527746..528411	+	221	16752758	-	CP0479	-	ABC transporter, permease protein
474	 36.39	-1	528408..529226	+	272	16752759	-	CP0480	-	putative lipoprotein
475	 39.02	0	529373..529882	+	169	16752760	-	CP0481	-	hypothetical protein
476	 30.67	-2	529898..530047	+	49	16752761	-	CP0482	-	hypothetical protein
477	 35.34	-1	530146..530493	+	115	16752762	-	CP0483	-	hypothetical protein
478	 39.25	0	530497..532914	+	805	16752763	gyrB	CP0484	-	DNA gyrase subunit B
479	 40.96	0	532930..535434	+	834	16752764	-	CP0485	-	DNA gyrase subunit A
480	 42.83	0	535439..536059	+	206	16752765	tdk	CP0486	-	thymidylate kinase
481	 38.91	0	536050..536946	+	298	16752766	-	CP0487	-	DNA polymerase III subunit delta'
482	 40.71	0	536918..537649	-	243	16752767	-	CP0488	-	serine esterase, putative
483	 37.51	0	537958..538818	+	286	16752768	-	CP0489	-	Sua5/YciO/YrdC family protein
484	 40.18	0	538833..539810	+	325	16752769	-	CP0490	-	dipeptidase, putative
485	 39.01	0	539816..539956	-	46	16752770	-	CP0491	-	hypothetical protein
486	 43.93	0	539962..540348	-	128	16752771	-	CP0492	-	hypothetical protein
487	 40.78	0	540370..541161	-	263	16752772	-	CP0493	-	hypothetical protein
488	 26.26	-2	541264..541362	-	32	16752773	-	CP0494	-	hypothetical protein
489	 42.67	0	541404..542099	-	231	16752774	-	CP0495	-	hypothetical protein
490	 34.45	-1	542663..543556	+	297	16752775	ubiA	CP0496	-	prenyltransferase
491	 39.55	0	543553..544131	+	192	16752776	-	CP0497	-	aromatic acid decarboxylase
492	 39.84	0	544144..545034	-	296	16752777	-	CP0498	-	hypothetical protein
493	 40.90	0	545347..546192	-	281	16752778	surE	CP0499	-	stationary phase survival protein SurE
494	 41.90	0	546247..546981	-	244	16752779	-	CP0500	-	hypothetical protein
495	 35.47	-1	547223..547738	+	171	16752780	-	CP0501	-	hypothetical protein
496	 34.26	-1	547932..548039	-	35	16752781	-	CP0502	-	hypothetical protein
497	 38.43	0	549156..550019	+	287	16752782	-	CP0504	-	hypothetical protein
498	 37.24	0	550019..550888	+	289	16752783	-	CP0505	-	hypothetical protein
499	 38.45	0	551118..551957	+	279	16752784	-	CP0506	-	hypothetical protein
500	 39.90	0	552021..552827	+	268	16752785	-	CP0507	-	hypothetical protein
501	 37.76	0	553721..555232	-	503	16752786	-	CP0510	-	hypothetical protein
502	 33.96	-1	555226..555384	+	52	16752787	rpmG	CP0511	-	50S ribosomal protein L33
503	 38.49	0	555442..556953	+	503	16752788	-	CP0512	-	hypothetical protein
504	 39.35	0	556956..557636	+	226	16752789	-	CP0513	-	ABC transporter, ATP-binding protein
505	 30.00	-2	557675..557824	+	49	16752790	-	CP0514	-	hypothetical protein
506	 37.11	0	557868..558317	+	149	16752791	rplM	CP0515	-	50S ribosomal protein L13
507	 37.04	-1	558331..558735	+	134	16752792	rpsI	CP0516	-	30S ribosomal protein S9
508	 40.68	0	558781..559638	-	285	16752793	-	CP0517	-	NLP/P60 family protein
509	 40.97	0	559724..560365	-	213	16752794	adk	CP0518	-	adenylate kinase
510	 38.03	0	560728..561153	+	141	16752795	-	CP0519	-	hypothetical protein
511	 38.62	0	561365..561799	+	144	16752796	-	CP0520	-	hypothetical protein
512	 41.56	0	561929..563083	+	384	16752797	-	CP0521	-	hypothetical protein
513	 43.70	0	563422..564588	+	388	16752798	-	CP0522	-	hypothetical protein
514	 36.70	-1	564608..565408	-	266	16752799	-	CP0523	-	6-phosphogluconolactonase
515	 39.64	0	565442..566980	-	512	16752800	-	CP0524	-	glucose-6-phosphate 1-dehydrogenase
516	 40.00	0	567066..567530	-	154	16752801	-	CP0525	-	Holliday junction resolvase-like protein
517	 41.70	0	567514..569127	-	537	16752802	-	CP0526	-	CTP synthetase
518	 40.26	0	569103..569867	-	254	16752803	-	CP0527	-	3-deoxy-manno-octulosonate cytidylyltransferase
519	 21.95	-2	569893..570015	+	40	16752804	-	CP0528	-	hypothetical protein
520	 39.51	0	570043..570738	+	231	16753081	-	CP0529	-	hypothetical protein
521	 34.17	-1	570773..570892	+	39	16752805	-	CP0530	-	hypothetical protein
522	 35.56	-1	570859..571038	+	59	16752806	-	CP0531	-	hypothetical protein
523	 38.37	0	571161..572054	+	297	16752807	-	CP0532	-	hypothetical protein
524	 40.96	0	572326..573033	+	235	16752808	-	CP0533	-	ABC transporter, ATP-binding protein
525	 37.64	0	573177..573710	+	177	16752809	-	CP0534	-	hypothetical protein
526	 41.91	0	573720..574955	-	411	16752810	-	CP0535	-	hypothetical protein
527	 39.17	0	575173..575874	+	233	16752811	-	CP0536	-	hypothetical protein
528	 38.44	0	575867..576277	+	136	16752812	-	CP0537	-	putative disulfide oxidoreductase
529	 40.25	0	576313..576717	-	134	16752813	-	CP0538	-	hypothetical protein
530	 41.96	0	576739..577410	-	223	16752814	-	CP0539	-	hypothetical protein
531	 40.35	0	577457..577627	-	56	16752815	-	CP0540	-	hypothetical protein
532	 38.68	0	577606..577848	-	80	16752816	-	CP0541	-	hypothetical protein
533	 37.53	0	577947..578327	-	126	16752817	-	CP0542	-	hypothetical protein
534	 34.50	-1	578438..578779	-	113	16752818	-	CP0543	-	hypothetical protein
535	 37.23	0	579216..579626	-	136	16752819	-	CP0544	-	hypothetical protein
40.53	MEAN

3.43	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.